| | Glucose derivatives |
| (Glc) |
glucose |
| (GlcN) |
2-amino-2-deoxyglucose |
| (Glc1N) |
1-amino-1-deoxyglucose (used for N-glycans) |
| (Glc1NA) |
1-amino-1-deoxyglucuronic acid (used for N-glycans) |
| (GlcN1N) |
1,2-diamino-1,2-dideoxyglucose (used for N-glycans) |
| (Glc3N) |
3-amino-3-deoxy-glucose (kanosamine when D) |
| (Glc6N) |
6-amino-6-deoxyglucose |
| (1dGlc) |
1-deoxy-glucose (the same as linear form of 1,5-anhGlc-ol, which still has 1-5 cycle) |
| (Glc1S) |
1-thioglucose (with C-SH bond) |
| (Myc) |
3-dimethylamino-3,6-dideoxy-D-glucose (mycaminose) |
| (GlcA) |
glucuronic acid |
| (GlcNA) |
2-amino-2-deoxyglucuronic acid |
| (Glc3NA) |
3-amino-3-deoxyglucuronic acid |
| (GlcN3N) |
2,3-diamino-2,3-dideoxyglucose |
| (GlcN3NA) |
2,3-diamino-2,3-dideoxyglucuronic acid |
| (GlcN4NA) |
2,4-diamino-2,4-dideoxyglucuronic acid |
| (GlcN6N) |
2,6-diamino-2,6-dideoxyglucose |
| (Glc3N6N) |
3,6-diamino-3,6-dideoxyglucose |
| (Mur) |
2-amino-3-[(R)-1-carboxyethyl]-2-deoxy-D-glucose (muramic acid) |
| (Mur-lactam) |
2-amino-3-[(R)-1-carboxyethyl]-2-deoxy-D-glucose d-lactam (muramic acid lactam) |
| (1,6anhMur) |
1,6-anhydro-2-amino-3-[(R)-1-carboxyethyl]-2-deoxy-D-glucose (1,6-anhydromuramic acid) |
| (iMur) |
2-amino-3-[(S)-1-carboxyethyl]-2-deoxy-D-glucose (isomuramic acid) |
| (Qui) |
6-deoxyglucose (quinovose) (3-O-methyl derivative = thevetose) |
| (QuiN) |
2-amino-2,6-dideoxyglucose |
| (Qui3N) |
3-amino-3,6-dideoxyglucose |
| (Qui4N) |
4-amino-4,6-dideoxyglucose (viosamine if D) |
| (QuiN3N) |
2,3-diamino-2,3,6-trideoxyglucose |
| (S6Qui) |
6-sulphoquinovose (with C-S bond) |
| (QuiN4N) |
2,4-diamino-2,4,6-trideoxyglucose (bacillosamine) |
| (Qui1N4N) |
1,4-diamino-1,4,6-trideoxyglucopyranose |
| (QuiN1N4N) |
1,2,4-triamino-1,2,4,6-tetradeoxyglucopyranose (used for N-glycans) |
| (6dglcHep) |
6-deoxy-gluco-heptose |
| (DDglcHep) |
D-glycero-D-gluco-heptose |
| (DLglcHep) |
D-glycero-L-gluco-heptose |
| (LDglcHep) |
L-glycero-D-gluco-heptose |
| (GlcN-onic) |
2-amino-2-deoxygluconic acid |
| (Glc-ol) |
glucitol |
| (GlcN-ol) |
2-amino-2-deoxyglucitol |
| (Glc1N-ol) |
1-amino-1-deoxyglucitol |
| (GlcN1N-ol) |
1,2-diamino-1,2-dideoxyglucitol |
| (Mur-ol) |
2-amino-3-[(R)-1-carboxyethyl]-2-deoxy-D-glucitol (muramic alditol) |
| (Qui-ol) |
6-deoxy-glucitol (quinovitol) = 1-deoxy-gulitol |
| (QuiN-ol) |
2-amino-2,6-dideoxyglucitol |
| (Qui3N-ol) |
3-amino-3,6-dideoxyglucitol |
| (Qui4N-ol) |
4-amino-4,6-dideoxyglucitol |
| (QuiN4N-ol) |
2,4-diamino-2,4,6-trideoxyglucitol |
| (1,5anhGlc-ol) |
1,5-anhydroglucitol (= 1dGlcp in pyranose form) |
| (1,6anhGlcN) |
2-amino-1,6-anhydro-2-deoxyglucose |
| (1,6anhGlc) |
1,6-anhydroglucose |
| | Mannose derivatives |
| (Man) |
mannose |
| (ManN) |
2-amino-2-deoxymannose |
| (Man1N) |
1-amino-1-deoxymannose |
| (Man3N) |
3-amino-3-deoxymannose |
| (Man4N) |
4-amino-4-deoxymannose |
| (ManN3N) |
2,3-diamino-2,3-dideoxymannose |
| (ManA) |
mannuronic acid |
| (ManNA) |
2-amino-2-deoxymannuronic acid |
| (ManN3NA) |
2,3-diamino-2,3-dideoxymannuronic acid |
| (Rha) |
6-deoxymannose (rhamnose) |
| (RhaN) |
2-amino-2,6-dideoxymannose |
| (Rha3N) |
3-amino-3,6-dideoxymannose (mycosamine if D) |
| (Rha4N) |
4-amino-4,6-dideoxymannose (perosamine if D) |
| (RhaN3N) |
2,3-diamino-2,3,6-trideoxymannose |
| (RhaN4N) |
2,4-diamino-2,4,6-trideoxymannose |
| (1dRha) |
1,6-dideoxymannose (1-deoxyrhamnose) |
| (Man3CMe) |
3-C-methylmannose |
| (Rha3CMe) |
3-C-methylrhamnose (evalose) |
| (Rha3CMe4N) |
3-C-methyl-4-deoxy-4-amino-rhamnose (kansosamine when 2-O-methylated) |
| (6dmanHep) |
6-deoxy-manno-heptose |
| (DDmanHep) |
D-glycero-D-manno-heptose |
| (LDmanHep) |
L-glycero-D-manno-heptose |
| (DLmanHep) |
D-glycero-L-manno-heptose |
| (LLmanHep) |
L-glycero-L-manno-heptose |
| (Man-onic) |
mannonic acid |
| (Man-ol) |
mannitol |
| (Rha-ol) |
6-deoxy-D-mannitol (D-rhamnitol?), 1-deoxy-D-mannitol (L-rhamnitol?) |
| (Rha1N-ol) |
1-amino-1,6-deoxy-D-mannitol |
| (2,5anhMan) |
2,5-anhydromannose |
| (2,5anhMan-ol) |
2,5-anhydromannitol |
| (DDmanHep-ol) |
D-glycero-D-manno-heptitol |
| (LDmanHep-ol) |
L-glycero-D-manno-heptitol |
| | Galactose derivatives |
| (Gal) |
galactose |
| (GalN) |
2-amino-2-deoxygalactose |
| (Gal1N) |
1-amino-1-deoxygalactose (used for N-glycans) |
| (GalN1N) |
1,2-diamino-1,2-dideoxygalactose (used for N-glycans) |
| (Gal3N) |
3-amino-3-deoxygalactose |
| (GalN3N) |
2,3-diamino-2,3-dideoxygalactose |
| (GalNA) |
2-amino-2-deoxygalacturonic acid |
| (GalA) |
galacturonic acid |
| (GalN3NA) |
2,3-diamino-2,3-dideoxygalacturonic acid |
| (GalN3N4NA) |
2,3,4-triamino-2,3,4-trideoxygalacturonic acid |
| (1dGal) |
1-deoxy-galactose (the same as linear form of 1,5-anhGal-ol, which still has 1-5 cycle) |
| (3,6anhGal) |
3,6-anhydro-galactose |
| (Gal1S) |
1-thiogalactose (with C-SH bond) |
| (Fuc) |
6-deoxygalactose (fucose) |
| (FucN) |
2-amino-2,6-dideoxygalactose |
| (Fuc3N) |
3-amino-3,6-dideoxygalactose |
| (Fuc4N) |
4-amino-4,6-dideoxygalactose (thomosamine if D) |
| (FucN4N) |
2,4-diamino-2,4,6-trideoxygalactose |
| (S6Fuc) |
6-sulphofucose (with C-S bond) |
| (Gal3F) |
3-deoxy-3-fluorogalactose |
| (Fucl) |
6-deoxy-tagatose (fucolose when L) |
| (6dgalHep) |
6-deoxy-galacto-heptose |
| (DDgalHep) |
D-glycero-D-galacto-heptose |
| (Gal4N5N-onic) |
4,5-diamino-4,5-dideoxygalactonic acid |
| (Gal-ol) |
galactitol |
| (GalN-ol) |
2-amino-2-deoxygalactitol |
| (GalA-ol) |
galactitol uronic acid (same as galactonic acid with inverted D |
| (Fuc-ol) |
6-deoxy-D-galactitol (D-fucitol), 1-deoxy-D-galactitol (L-fucitol) |
| (FucN-ol) |
2-amino-2,6-dideoxy-D-galactitol / 5-amino-1,5-dideoxy-D-galactitol (D/L, respectively) |
| (Fuc1N-ol) |
1-amino-1,6-dideoxy-D-galactitol |
| (Gallic) |
3,4,5-trihydroxybenzoic acid (gallic acid); carboxyl is C7 |
| | Allose derivatives |
| (All) |
allose |
| (AllN) |
2-amino-2-deoxyallose |
| (AllN3N) |
2,3-diamino-2,3-dideoxyallose |
| (6dAll) |
6-deoxyallose |
| (6dAll1N) |
1-amino-6-deoxyallose |
| (All1N5NA) |
1,5-diamino-1,5-deoxy-alluronic acid |
| (All5NA) |
5-amino-5-deoxy-alluronic acid |
| (1dAll) |
1-deoxy-allose |
| (1dAll5NA) |
5-amino-1,5-dideoxy-alluronic acid |
| (6dallHep) |
6-deoxy-allo-heptose |
| (All-ol) |
allitol |
| | Altrose derivatives |
| (Alt) |
altrose |
| (AltN) |
2-amino-2-deoxyaltrose |
| (AltN3N) |
2,3-diamino-2,3-dideoxyaltrose |
| (AltA) |
altruronic acid |
| (AltNA) |
2-amino-2-deoxyaltruronic acid |
| (6dAlt) |
6-deoxyaltrose |
| (6dAltN) |
2-amino-2,6-dideoxyaltrose |
| (6dAltN4N) |
2,4-diamino-2,4,6-trideoxyaltrose |
| (6daltHep) |
6-deoxy-altro-heptose |
| (DDaltHep) |
D-glycero-D-altro-heptose |
| (Sed) |
altro-hept-2-ulose (sedoheptulose) |
| (2,7anhSed) |
2,7-anhydro-altro-hept-2-ulopyranose (sedoheptulosan if D) |
| (Alt-ol) |
altritol |
| (1dAlt-ol) |
1-deoxyaltritol |
| | Talose derivatives |
| (Tal) |
talose |
| (TalN) |
2-amino-2-deoxytalose |
| (TalN3N) |
2,3-diamino-2,3-dideoxytalose |
| (TalA) |
taluronic acid |
| (TalNA) |
2-amino-2-deoxytaluronic acid |
| (6dTal) |
6-deoxytalose |
| (6dTalN) |
2-amino-2,6-dideoxytalose (pneumosamine if D) |
| (6dTal3N) |
3-amino-3,6-dideoxytalose |
| (6dtalHep) |
6-deoxy-talo-heptose |
| (Tal-ol) |
talitol |
| (6dTal-ol) |
6-deoxytalitol |
| (2,5anhTal) |
2,5-anhydrotalose |
| (2,5anhTal-ol) |
2,5-anhydrotalitol |
| | Gulose derivatives |
| (Gul) |
gulose |
| (GulN) |
2-amino-2-deoxygulose |
| (GulN3N) |
2,3-diamino-2,3-dideoxygulose |
| (GulA) |
guluronic acid |
| (GulNA) |
2-amino-2-deoxyguluronic acid |
| (GulN3NA) |
2,3-diamino-2,3-dideoxyguluronic acid |
| (6dGul) |
6-deoxygulose |
| (1,6dGul) |
1,6-dideoxygulose |
| (6dGul3CMe) |
6-deoxy-3-C-methylgulose (virenose) |
| (6dgulHep) |
6-deoxy-gulo-heptose |
| (Gul4N5N-onic) |
4,5-diamino-4,5-dideoxygulonic acid |
| (Gul4N5NA-onic) |
4,5-diamino-4,5-dideoxygularic acid |
| (Gul-ol) |
gulitol |
| | Idose derivatives |
| (Ido) |
idose |
| (IdoN) |
2-amino-2-deoxyidose |
| (IdoN3N) |
2,3-diamino-2,3-dideoxyidose |
| (IdoN6N) |
2,6-diamino-2,6-dideoxyidose |
| (IdoA) |
iduronic acid |
| (6dIdo) |
6-deoxyidose |
| (6didoHep) |
6-deoxy-ido-heptose |
| (LDidoHep) |
L-glycero-D-ido-heptose |
| (Ido-ol) |
iditol |
| (DDidoHep-ol) |
D-glycero-D-ido-heptitol |
| | Xylose derivatives |
| (Xyl) |
xylose |
| (XylN) |
2-amino-2-deoxyxylose |
| (Xyl5S) |
5-thio-5-deoxyxylose |
| (1dXyl) |
1-deoxy-xylose |
| (3dxylHex) |
3-deoxy-xylo-hexose |
| (4dxylHex) |
4-deoxy-xylo-hexose |
| (1,4dxylHex) |
1,4-dideoxy-xylo-hexose |
| (Abe) |
3,6-dideoxy-D-xylo-hexose (abequose), 3dFuc=3,6dGul |
| (Col) |
3,6-dideoxy-L-xylo-hexose (colitose), 3dFuc=3,6dGul |
| (4,6dxylHex) |
4,6-dideoxy-xylo-hexose (3-O-methyl derivative = halcose) |
| (4,6dxylHex3N) |
3-amino-3,4,6-trideoxy-xylo-hexose |
| (Des) |
3-dimethylamino-3,4,6-trideoxy-D-xylo-hexose (desosamine) |
| (Sor) |
sorbose (xylo-hex-2-ulose) |
| (6dxylHex-3-ulo) |
6-deoxy-xylo-hexos-3-ulose |
| (xylHex-4-ulo) |
xylo-hexos-4-ulose |
| (6dxylHex-4-ulo) |
6-deoxy-xylo-hexos-4-ulose |
| (6dxylHexN-4-ulo) |
2-amino-2,6-dideoxy-xylo-hexos-4-ulose |
| (AceA) |
3C-carboxy-5-deoxy-L-xylofuranose (aceric acid) |
| (Xyl-ol) |
xylitol |
| (Xyl1N-ol) |
1-amino-1-deoxy-xylitol |
| (XylN-onic) |
2-amino-2-deoxy-xylonic acid |
| | Ribose derivatives |
| (Rib) |
ribose |
| (RibA) |
riburonic acid |
| (1dRib) |
1-deoxy-ribose |
| (2dRib) |
2-deoxy-erytro-pentose (2d-Rib = 2d-Ara); alias for 2deryPen |
| (Dig) |
2,6-dideoxy-ribo-hexose (digitoxose, 2d6d-All = 2d6d-Alt), 3OMe-derivative = cymarose |
| (Par) |
3,6-dideoxy-D-ribo-hexose (paratose), 3dQui=3,6dAll |
| (Psi) |
psicose (ribo-hex-2-ulose) |
| (ribHex-3-ulo) |
ribo-hexos-3-ulose |
| (6dribHex-3-ulo) |
6-deoxy-ribo-hexos-3-ulose |
| (ribHexNA-3-ulo) |
2-amino-2-deoxy-ribo-hexos-3-ulose-uronic acid |
| (Dig3CMe) |
2,6-dideoxy-3-C-methyl-ribohexose (3-C-methyl-digitoxose) (3-O-methyl derivative = cladinose) |
| (Rib-ol) |
ribitol |
| | Arabinose derivatives |
| (Ara) |
arabinose |
| (Ara4N) |
4-amino-4-deoxyarabinose |
| (Ara1N) |
1-amino-1-deoxyarabinose |
| (1dAra) |
1-deoxy-arabinose |
| (2daraHex) |
2-deoxy-arabino-hexose (2d-Glc, 2d-Man) |
| (2daraHexA) |
2-deoxy-arabino-hexuronic acid (2-deoxyglucuronic acid) |
| (4daraHex) |
4-deoxy-arabino-hexose |
| (Tyv) |
3,6-dideoxy-D-arabino-hexose (tyvelose), 3dRha=3,6dAlt |
| (Asc) |
3,6-dideoxy-L-arabino-hexose (ascarilose), 3dRha=3,6dAlt |
| (4,6daraHexN) |
2-amino-2,4,6-trideoxy-arabino-hexose |
| (Tyv4N) |
4-amino-3,4,6-trideoxy-D-arabino-hexose |
| (Gar3N) |
4C-methyl-3-methylamino-3-deoxy-L-arabinose (garosamine) |
| (Fru) |
fructose (arabino-hex-2-ulose) |
| (6dFru) |
6-deoxy-fructose (6-deoxy-arabino-hex-2-ulose) |
| (1,6dFru) |
1,6-dideoxy-fructose (1,6-dideoxy-arabino-hex-2-ulose) |
| (6daraHex-4-ulo) |
6-deoxy-arabino-hexos-4-ulose |
| (6daraHexN-4-ulo) |
2-amino-2,6-dideoxy-arabino-hexos-4-ulose |
| (3daraHep-ulosonic) |
3-deoxy-arabino-hept-2-ulosonic acid |
| (Ara-ol) |
arabinitol |
| (1,5daraHex-ol) |
1,5-dideoxy-arabinohexitol |
| | Lyxose derivatives |
| (Lyx) |
lyxose |
| (3dlyxHex) |
3-deoxy-lyxo-hexose |
| (4dlyxHex) |
4-deoxy-lyxo-hexose |
| (2,6dlyxHex) |
2,6-dideoxy-lyxo-hexose (2d-Fuc = 2d6d-Tal), D-form: oliose, 3OMe-derivative = diginose |
| (4,6dlyxHex) |
4,6-dideoxy-lyxo-hexose |
| (Dau3N) |
3-amino-2,3,6-trideoxy-L-lyxo-hexose (daunosamine) |
| (Tag) |
tagatose (lyxo-hex-2-ulose) |
| (Tag-onic) |
lyxo-hex-2-ulosonic acid |
| (6dlyxHex-4-ulo) |
6-deoxy-lyxo-hexos-4-ulose |
| (6dlyxHexN-4-ulo) |
2-amino-2,6-dideoxy-lyxo-hexos-4-ulose |
| (Lyx3CHm) |
3-C-(hydroxymethyl)lyxose (dihydrohydroxystreptose) |
| (Van3N3CMe) |
3-amino-2,3,6-trideoxy-3-C-methyl-L-lyxo-hexose (vancosamine) |
| (3dlyxHep-ulosaric) |
3-deoxy-lyxo-hept-2-ulosaric acid (Dha_A when D) |
| (6dlyxHep-4-ulo) |
6-deoxy-lyxo-heptos-4-ulose |
| (Lyx-ol) |
lyxitol |
| (LyxN2CMe-onic) |
2-amino-2-deoxy-2-C-methyllyxonic acid |
| | Threose derivatives |
| (3dthrPen) |
3-deoxy-threo-pentose |
| (thrPen-4-ulo) |
threo-pentos-4-ulose (ald function at C1, keto at C4) |
| (2dthrPen4N) |
4-amino-2,4-dideoxy-threo-pentose |
| (Xul) |
threo-pent-2-ulose (xylulose) |
| (4dthrHex4en) |
4-deoxy-threo-hex-4-enose |
| (4dthrHex4enA) |
4-deoxy-threo-hex-4-enuronic acid |
| (4dthrHex4enNA) |
2-amino-2,4-dideoxy-threo-hex-4-enuronic acid |
| (Rho) |
2,3,6-trideoxy-L-threo-hexose (rhodinose) |
| (Rhon) |
3-dimethylamino-2,3,6-trideoxy-lyxo-hexose (rhodosamine) |
| (3,6dthrHex-4-ulo) |
3,6-dideoxy-threo-hexos-4-ulose |
| (3dthrHex-ulosonic) |
3-deoxy-threo-hex-2-ulosonic acid |
| (Thre) |
threose |
| (Thre-ol) |
threitol |
| (1dThre-ol) |
1-deoxythreitol |
| (4dThre-ol) |
4-deoxythreitol (alias for 1-deoxytreitol ?) |
| (1dThre3N-ol) |
3-amino-1,3-dideoxythreitol |
| (Thre-onic) |
threonic acid |
| (ThreN) |
2-amino-2-deoxythreose |
| | Erythrose derivatives |
| (3deryPen) |
3-deoxy-erytro-pentose (3d-Rib = 3d-Xyl) |
| (eryPen-4-ulo) |
erythro-pentos-4-ulose (ald function at C1, keto at C4) |
| (Rul) |
erythro-pent-2-ulose (ribulose) |
| (4deryHex4en) |
4-deoxy-erythro-hex-4-enose |
| (4deryHex4enA) |
4-deoxy-erythro-hex-4-enuronic acid |
| (4deryHex4enNA) |
2-amino-2,4-dideoxy-erythro-hex-4-enuronic acid |
| (Ami) |
2,3,6-trideoxy-erythro-hexose (amicetose, default: D) |
| (PurC) |
2,6-diamino-2,3,4,6-tetradeoxy-D-erythro-hexose (purpurosamine C) |
| (For) |
4-dimethylamino-2,3,4,6-tetradeoxy-D-erythro-hexose (forosamine) |
| (Ery) |
erythrose |
| (Ery-ol) |
erythritol |
| (1dEry-ol) |
1-deoxyerythritol |
| (4dEry-ol) |
4-deoxyerythritol (alias for 1-deoxyerythritol ?) |
| (1dEry3N-ol) |
3-amino-1,3-dideoxyerythritol |
| (Ery-onic) |
erythronic acid |
| (EryN) |
2-amino-2-deoxyerythrose |
| | Glycerol derivatives |
| (3dgroPen-ulosonic) |
3-deoxy-glycero-pent-2-ulosonic acid |
| (Gro-al) |
glyceraldehyde |
| (Gro) |
glycerol ; always change -3)LGro to -1)DGro. L-Gro = sn-Gro |
| (GroN) |
2-amino-2-deoxyglycerol (2-aminopropane-1,3-diol). Always D. |
| (3dgroTet) |
3-deoxy-glycero-tetrose |
| (3dgroTet-ol) |
3-deoxy-glycero-tetritol |
| (1,3dgroTet-ol) |
1,3-dideoxy-glycero-tetritol |
| (Api) |
apiose (3-C-(hydroxymethyl)-D/L-glycero-tetrose) |
| (Api-ol) |
apiol (3-C-(hydroxymethyl)-erythro-tetrol) |
| (Apigenin) |
5,7,4'-trihydroxyflavone (atom 1 is O) |
| | Higher sugars |
| (Yer) |
3,6-dideoxy-4-C-[(S)-1-hydroxyethyl]-D-xylo-hexose (yersiniose or yersiniose A) |
| (iYer) |
3,6-dideoxy-4-C-[(R)-1-hydroxyethyl]-D-xylo-hexose (isoyersiniose or yersiniose B) |
| (Ko) |
ketooctonic acid (D-glycero-D-talo-oct-2-ulosonic acid) |
| (Kdo) |
ketodeoxyoctonic acid (3-deoxy-D-manno-oct-2-ulosonic acid) |
| (Kdo-ol) |
3-deoxy-D-glycero-D-galacto/talo-octonic acid (Kdo alditol, any of the two isomers) |
| (Kdo8N) |
8-amino-3,8-dideoxy-D-manno-oct-2-ulosonic acid |
| (3,7dlyxOct-ulosonic) |
3,7-dideoxy-lyxo-oct-2-ulosonic acid |
| (2,7anhKdo) |
2,7-anhydro-3-deoxy-D-manno-oct-2-ulosonic acid |
| (4,7anhKdo) |
4,7-anhydro-3-deoxy-D-manno-oct-2-ulosonic acid |
| (4,8anhKdo) |
4,8-anhydro-3-deoxy-D-manno-oct-2-ulosonic acid |
| (2,7anhKdo-ol) |
2,7-anhydro-3-deoxy-D-glycero-D-galacto/talo-octonic acid; any of the two isomers |
| (2,7anhmanOct-onic) |
2,7-anhydro-manno-octonic acid; any of the four isomers |
| (LDglcOct-3-ulo) |
L-glycero-D-gluco-3-octulose (3-8 pyranose cycle) |
| (Kdn) |
ketodeoxynononic acid (3-deoxy-D-glycero-D-galacto-non-2-ulosonic) |
| (Neu) |
neuraminic acid (5-amino-3,5-dideoxy-D-glycero-D-galacto-non-2-ulosonic) |
| (Pse) |
pseudaminic acid (5,7-diamino-3,5,7,9-tetradeoxy-L-glycero-L-manno-non-2-ulosonic) |
| (Pse8N) |
8N-pseudaminic acid (5,7,8-triamino-3,5,7,8,9-pentadeoxy-L-glycero-L-manno-non-2-ulosonic) |
| (8ePse) |
8-epipseudaminic acid (5,7-diamino-3,5,7,9-tetradeoxy-D-glycero-L-manno-non-2-ulosonic) |
| (Leg) |
legionaminic acid (5,7-diamino-3,5,7,9-tetradeoxy-D-glycero-D-galacto-non-2-ulosonic) |
| (Leg8N) |
8N-legionaminic acid (5,7,8-triamino-3,5,7,8,9-pentadeoxy-D-glycero-D-galacto-non-2-ulosonic) |
| (4eLeg) |
4-epilegionaminic acid (5,7-diamino-3,5,7,9-tetradeoxy-D-glycero-D-talo-non-2-ulosonic) |
| (8eLeg) |
8-epilegionaminic (5,7-diamino-3,5,7,9-tetradeoxy-L-glycero-D-galacto-non-2-ulosonic) |
| (LD3,9dtalNon5N7N-ulosonic) |
4,8-epilegionaminic acid (5,7-diamino-3,5,7,9-tetradeoxy-L-glycero-D-talo-non-2-ulosonic |
| (Aci) |
acinetaminic acid (5,7-diamino-3,5,7,9-tetradeoxy-L-glycero-L-altro-non-2-ulosonic) |
| (8eAci) |
8-epiacinetaminic acid (5,7-diamino-3,5,7,9-tetradeoxy-D-glycero-L-altro-non-2-ulosonic) |
| (DL3,9dglcNon5N7N-ulosonic) |
5,7-diamino-3,5,7,9-tetradeoxy-D-glycero-L-gluco-nonulosonic acid |
| (LL3,9dglcNon5N7N-ulosonic) |
5,7-diamino-3,5,7,9-tetradeoxy-L-glycero-L-gluco-nonulosonic acid |
| (DD3,9dmanNon5N7N-ulosonic) |
5,7-diamino-3,5,7,9-tetradeoxy-D-glycero-D-manno-non-2-ulosonic acid |
| (DL3,9dgalNon5N7N-ulosonic) |
5,7-diamino-3,5,7,9-tetradeoxy-D-glycero-L-galacto-non-2-ulosonic acid |
| (DD3,9dgulNon5N7N-ulosonic) |
5,7-diamino-3,5,7,9-tetradeoxy-D-glycero-D-gulo-non-2-ulosonic acid |
| (DD3,9dthraltNon-onic) |
3,9-dideoxy-D-threo-D-altro-nononic acid |
| (Caryose) |
4,8-cyclo-3,9-dideoxy-L-erythro-D-ido-nonose |
| (Caryophyllose) |
3,6,10-trideoxy-4-C-[(R)-1-hydroxyethyl]-D-erythro-D-gulo-decose ; atom numbering: 1-2-3-4-5-6-7-8-9-4`-4``, pyranose cycle is 1-2-3-4-4`] |
| (Shewanellose) |
2-acetamido-4-C-(3'-carboxamide-2',2'-dihydroxypropyl)-2,6-dideoxy-D-galactose |
| (Erwiniose) |
3,6,8-trideoxy-4-C-[(R)-1-hydroxyethyl]-D-gulo-octose ; can form 1,1'-pyranose |
| | Amino acids |
| (Tau) |
taurine (2-aminoethanesulfonic acid) |
| (Gly) |
glycine |
| (Ala) |
alanine |
| (Abu) |
aminobutyric acid |
| (Aib) |
aminoisobutyric acid |
| (Ser) |
serine |
| (HSer) |
homoserine |
| (Thr) |
threonine (2S,3R) |
| (aThr) |
allothreonine (2S,3S) |
| (Arg) |
arginine |
| (Asp) |
aspartic acid |
| (Asn) |
asparagine |
| (Glu) |
glutamic acid |
| (Gln) |
glutamine |
| (iGln) |
isoglutamine |
| (His) |
histidine |
| (Pro) |
proline |
| (Hyp) |
hydroxyproline (two isomers) |
| (Orn) |
ornithine |
| (Lys) |
lysine |
| (Leu) |
leucine |
| (Ile) |
isoleucine |
| (Nle) |
norleucine |
| (Cys) |
cysteine |
| (Hcy) |
homocysteine |
| (Sec) |
selenocysteine |
| (Val) |
valine |
| (Iva) |
isovaline (a-methyl-aminobutyric acid) |
| (Nva) |
norvaline |
| (Tyr) |
tyrosine |
| (Phe) |
phenylalanine |
| (Met) |
methionine |
| (Trp) |
tryptophan |
| (Ply) |
pyrrolysine (N6-{[(2R,3R)-3-methyl-3,4-dihydro-2H-pyrrol-2-yl]carbonyl}-lysine) |
| (PmN2) |
diaminopimelic acid (HOOC-(R)CH(NH2)-CH2-CH2-CH2-(R)CH(NH2)-COOH) |
| (mPmN2) |
meso-diaminopimelic acid (HOOC-(S)CH(NH2)-CH2-CH2-CH2-(R)CH(NH2)-COOH) |
| (SRCetLys) |
(2S,8R)-N(epsilon)-(1-carboxyethyl)lysine (derived from L-Lys) |
| (SSCetLys) |
(2S,8S)-N(epsilon)-(1-carboxyethyl)lysine (derived from L-Lys) |
| (RSCetLys) |
(2R,8S)-N(epsilon)-(1-carboxyethyl)lysine (derived from D-Lys) |
| (RRCetLys) |
(2R,8R)-N(epsilon)-(1-carboxyethyl)lysine (derived from D-Lys) |
| | Aliphatic acids |
| (Fo) |
formic acid; C1:0 |
| (Ac) |
acetic acid; C2:0 |
| (Pp) |
propanoic acid; C3:0 |
| (But) |
butyric acid; C4:0 (former Br_) |
| (iBut) |
isobutyric acid; C4:0 |
| (Tig) |
tiglic acid ((E)-2-methylbut-2-enoic acid); C5:1 |
| (Ang) |
angelic acid ((Z)-2-methylbut-2-enoic acid); C5:1 |
| (Vl) |
valeric acid; C5:0 |
| (SRDhpa) |
2S,4R-dihydroxy-valeric acid (dihydroxypentanoic acid); C5:0 |
| (RRDhpa) |
2R,4R-dihydroxy-valeric acid (dihydroxypentanoic acid); C5:0 |
| (iVl) |
isovaleric acid; C5:0 |
| (3HOiVl) |
3-hydroxy-isovaleric acid; C5:0 |
| (aiVl) |
anteisovaleric acid (2-methyl-butyric acid); C5:0 |
| (3HOaiVl) |
3S-hydroxy-anteisovaleric acid (2-methyl-butyric acid); C5:0 |
| (Hxo) |
hexanoic acid; C6:0 |
| (3HOHxo) |
3-hydroxy-hexanoic acid; C6:0 |
| (5HOiHxo) |
5-hydroxy-isohexanoic acid; C6:0 |
| (2HOaiHxo) |
2-hydroxy-3-methyl-pentanoic acid; C6:0, R/S-configuration at C3 is unknown |
| (4HOaiHxo) |
4-hydroxy-3-methyl-pentanoic acid; C6:0, R/S-configuration at C3 is unknown |
| (Hpo) |
heptanoic acid; C7:0 |
| (Oco) |
octanoic acid; C8:0 |
| (3HOOco) |
3-hydroxy-octanoic acid; C8:0 |
| (Nno) |
pelargonic acid (nonanoic acid); C9:0 |
| (8HONno) |
8-hydroxy-nonanoic acid; C9:0 |
| (9HONno) |
9-hydroxy-nonanoic acid; C9:0 |
| (Dco) |
capric acid (decanoic acid); C10:0 |
| (3HODco) |
3-hydroxy-decanoic acid; C10:0 |
| (9HObDco) |
branched 9-hydroxy-decanoic acid; C10:0, branching position unknown. WURCS is for ?-methyl-8-hydroxy-nonanoic acid |
| (Dce) |
dec-9-enoic acid; C10:1{9} |
| (C10={2}) |
dec-2-enoic acid; C10:1{2} |
| (Udo) |
undecanoic acid; C11:0 |
| (Lau) |
lauric acid (dodecanoic acid); C12:0 |
| (2HOLau) |
2-hydroxy-dodecanoic acid; C12:0 |
| (3HOLau) |
3-hydroxy-dodecanoic acid; C12:0 |
| (11HOLau) |
11-hydroxy-dodecanoic acid; C12:0 |
| (C12={5}) |
dodec-5-enoic acid; C12:1 |
| (C12={6}) |
dodec-6-enoic acid; C12:1 |
| (C12={t6}) |
dodec-6E-enoic acid; C12:1 |
| (C13) |
tridecanoic acid; C13:0 |
| (iC13) |
iso-tridecanoic acid; C13:0 |
| (2HOC13) |
2-hydroxy-tridecanoic acid; C13:0 |
| (3HOC13) |
3-hydroxy-tridecanoic acid; C13:0 |
| (3HOiC13) |
3-hydroxy-iso-tridecanoic acid; C13:0 |
| (C13={6}) |
tridec-6-enoic acid; C13:1 |
| (Myr) |
myristic acid (tetradecanoic acid); C14:0 |
| (2HOMyr) |
2-hydroxy-tetradecanoic acid; C14:0 |
| (3HOMyr) |
3-hydroxy-tetradecanoic acid; C14:0 |
| (3oxoMyr) |
3-oxo-tetradecanoic acid; C14:0 |
| (2,3HOiMyr) |
2,3-dihydroxy-iso-tetradecanoic acid; C14:0, R/S-configuration at C3 is unknown |
| (3HOiMyr) |
3-hydroxy-iso-tetradecanoic acid; C14:0 |
| (3HOC14={c4}) |
3-hydroxy-tetradec-4Z-enoic acid; C14:1 |
| (C14={5}) |
tetradec-5-enoic acid; C14:1 |
| (C14={6}) |
tetradec-6-enoic acid; C14:1 |
| (C14={7}) |
tetradec-7-enoic acid; C14:1 |
| (C14={8}) |
tetradec-8-enoic acid; C14:1 |
| (C15) |
pentadecanoic acid; C15:0 |
| (iC15) |
iso-pentadecanoic acid; C15:0 |
| (aiC15) |
anteiso-pentadecanoic acid; C15:0 |
| (2HOC15) |
2-hydroxy-pentadecanoic acid; C15:0 |
| (3HOC15) |
3-hydroxy-pentadecanoic acid; C15:0 |
| (3HOiC15) |
3-hydroxy-iso-pentadecanoic acid; C15:0 |
| (3,4HOiC15) |
3,4-dihydroxy-iso-pentadecanoic acid; C15:0; R/S-configuration at C4 is unknown |
| (C15={5}) |
pentadec-5-enoic acid; C15:1{5} |
| (C15={6}) |
pentadec-6-enoic acid; C15:1{6} |
| (Pam) |
palmitic acid (hexadecanoic acid); C16:0 |
| (aiPam) |
anteisopalmitic acid; C16:0 |
| (iPam) |
isopalmitic acid; C16:0 |
| (dPam) |
palmitoleic acid (hexadecenoic acid); C16:1{9}, E,Z-configuration unknown |
| (cdPam) |
cis-palmitoleic (hexadecenoic) acid; C16:1{9Z} |
| (2HOPam) |
2-hydroxy-hexadecanoic acid; C16:0 |
| (3HOPam) |
3-hydroxy-hexadecanoic acid; C16:0 |
| (15HOPam) |
15-hydroxy-hexadecanoic acid; C16:0 |
| (16HOPam) |
16-hydroxy-hexadecanoic acid; C16:0 |
| (15,16HOPam) |
15,16-dihydroxy-hexadecanoic acid; C16:0 |
| (2,15,16HOPam) |
2,15,16-trihydroxy-hexadecanoic acid; C16:0; R/S-configuration at C15 is unknown |
| (Jal) |
jalapinolic acid (11S-hydroxy-hexadecanoic acid); C16:0 |
| (2b14b1Pam) |
2,4-dimethyl-tetradecanoic acid; C16:0, R,S-configurations unknown |
| (2HOC16={t3}) |
2-hydroxy-trans-3-hexadecenoic acid; C16:1{3E} |
| (C16={5}) |
hexadec-5-enoic acid; C16:1{5} |
| (C16={6}) |
hexadec-6-enoic acid; C16:1{6} |
| (C16={11}) |
hexadec-11-enoic acid; C16:1{11} |
| (C16={t2,c9}) |
trans-2-cis-9-hexadecadienoic acid; C16:2{2E,9Z} |
| (C16={?,?}) |
hexadecadienoic acid; C16:2, bond positions and E,Z-configurations unknown |
| (C16={t2,t4,c9}) |
trans-2,4-cis-9-hexadecatrienoic acid; C16:3{2E,4E,9Z} |
| (C16={c7,c10,c13}) |
cis-7,10,13-hexadecatrienoic acid; C16:3{7Z,10Z,13Z} |
| (C16={?,?,?}) |
hexadecatrienoic acid; C16:3, bond positions and E,Z-configurations unknown |
| (15HOC16={?}) |
15-hydroxy-hexadecenoic acid; C16:1, bond position and E,Z-configuration unknown |
| (15HOC16={?,?}) |
15-hydroxy-hexadecadienoic acid; C16:2, bond positions and E,Z-configurations unknown |
| (Mar) |
margaric acid (heptadecanoic acid); C17:0 |
| (aiMar) |
anteiso-heptadecanoic acid; C17:0 |
| (2HOMar) |
2-hydroxy-margaric acid; C17:0 |
| (3HOMar) |
3-hydroxy-heptadecanoic acid; C17:0 |
| (3HOiMar) |
3-hydroxy-iso-heptadecanoic acid; C17:0 |
| (C17={5}) |
heptadec-5-enoic acid; C17:1{5} |
| (C17={6}) |
heptadec-6-enoic acid; C17:1{6} |
| (Ste) |
stearic acid (octadecanoic acid); C18:0 |
| (2HOSte) |
2-hydroxy-stearic acid; C18:0 |
| (3HOSte) |
3-hydroxy-stearic acid; C18:0 |
| (17HOSte) |
17-hydroxy-stearic acid; C18:0 |
| (18HOSte) |
18-hydroxy-stearic acid; C18:0 |
| (9,10,17HOSte) |
9,10,17-trihydroxy-stearic acid; C18:0, R/S-configuration at 9,10 unknown |
| (C18={5}) |
octadec-5-enoic acid; C18:1{5} |
| (C18={6}) |
octadec-6-enoic acid; C18:1{6} |
| (17HOC18={c9,c12,c15}) |
17-hydroxy-9Z,12Z,15Z-octadecatrienoic acid; C18:3{9Z,12Z,15Z} |
| (17HOC18={?}) |
17-hydroxy-octadecenoic acid; C18:1, bond position and E,Z-configuration unknown |
| (17HOC18={?,?}) |
17-hydroxy-octadecadienoic acid; C18:2, bond positions and E,Z-configurations unknown |
| (Ole) |
oleic acid (cis-9-octadecenoic acid); C18:1{9Z} |
| (C18c{9,11}) |
cyclo-9,11-octadecanoic acid; C18:c{9} |
| (17HOOle) |
17-hydroxy-cis-9-octadecenoic acid; C18:1{9Z} |
| (18HOOle) |
18-hydroxy-cis-9-octadecenoic acid; C18:1{9Z} |
| (Ricn) |
ricinoleic acid (12-R-hydroxy-cis-9-octadecenoic acid); C18:1{9Z} |
| (C18={t9}) |
trans-9-octadecenoic acid; C18:1{9E} |
| (Vac) |
vaccenic acid (11-octadecenoic acid); C18:1{11} |
| (cVac) |
cis-vaccenic (cis-11-octadecenoic) acid; C18:1{11Z} |
| (Lin) |
linoleic acid (cis,cis-9,12-octadecadienoic acid); C18:2{9Z,12Z} |
| (17HOLin) |
17-hydroxy-linoleic acid (17-hydroxy-9Z,12Z-octadecadienoic acid); C18:2{9Z,12Z} |
| (aLnn) |
(9,12,15)-linolenic acid (9,12,15-octadecatrienoic acid); C18:3{9,12,15} |
| (gLnn) |
(6,9,12)-linolenic acid (6,9,12-octadecatrienoic acid); C18:3{6,9,12} |
| (eSte) |
eleostearic acid (9,11,13-octadecatrienoic acid); C18:3{9,11,13} |
| (C18={?}) |
octadecenoic acid; C18:1, bond position and E,Z-configuration unknown |
| (C18={t2,t4,t6,c11}) |
2,4,6-trans-11-cis-octadecatetraenoic acid; C18:4{2E,4E,6E,11Z} |
| (C18={t5,t8,t11,t14}) |
trans-5,8,11,14-octadecatetraenoic acid; C18:4{5E,8E,11E,14E} |
| (C18={?,?,?,?}) |
octadecatetraenoic acid; C18:4, bond positions and E,Z-configurations unknown |
| (2HOC18={t3}) |
2-hydroxy-trans-3-octadecenoic acid; C18:1{3E} |
| (C19) |
nonadecanoic acid; C19:0 |
| (C19c{9,11}) |
9,11-cyclo-nonadecanoic acid; C19:c{9} |
| (10b1C19) |
tuberculostearic acid (10-methyl-octadecanoic acid); C19:0 |
| (Ach) |
arachidic acid (icosanoic acid); C20:0 |
| (2HOAch) |
2-hydroxy-icosanoic acid; C20:0 |
| (3HOAch) |
3-hydroxy-icosanoic acid; C20:0 |
| (d2Ach) |
8,11-icosadienoic acid; C20:2{8,11} |
| (d3Ach) |
5,8,11-icosatrienoic acid; 20:3{5,8,11} |
| (d4Ach) |
arachidonic acid (5,8,11,14-icosatetraenoic acid); 20:4{5,8,11,14} |
| (9b1Ach) |
9-methyl-nonadecanoic acid; C20:0 |
| (Hico) |
henicosanoic acid; C21:0 |
| (Beh) |
behenic acid (docosanoic); C22:0 |
| (2HOBeh) |
2-hydroxy-docosanoic acid; C22:0 |
| (3HOBeh) |
3-hydroxy-docosanoic acid; C22:0 |
| (13HOBeh) |
13-hydroxy-docosanoic acid; C22:0 |
| (17HOBeh) |
17-hydroxy-docosanoic acid; C22:0 |
| (2b14b1C22={t2}) |
2,4-dimethyl-eicos-2E-enoic acid; C22:1, can be R or S on C4 |
| (2b14b1C22={2}) |
2,4-dimethyl-eicos-2-enoic acid; C22:1, can be R or S on C4; E,Z-configuration unknown |
| (C23) |
tricosanoic acid; C23:0 |
| (C23={c14}) |
cis-14-tricosenoic acid; C23:1{14Z} |
| (Lig) |
lignoceric acid (tetracosanoic acid); C24:0 |
| (2HOLig) |
2-hydroxy-tetracosanoic acid; C24:0 |
| (Ner) |
nervonic acid (cis-15-tetracosenoic acid); C24:1{15Z} |
| (2HOC25) |
2-hydroxy-pentacosanoic acid; C25:0 |
| (C25={c16}) |
cis-16-pentacosenoic acid; C25:1{16Z} |
| (Crt) |
cerotic acid (hexacosanoic acid); C26:0 |
| (2HOCrt) |
2-hydroxy-hexacosanoic acid; C26:0 |
| (3HOCrt) |
3-hydroxy-hexacosanoic acid; C26:0 |
| (Ccr) |
carboceric acid (heptacosanoic acid); C27:0 |
| (Phthi) |
+C27-phthienoic acid (2,4,6-trimethyl-tetracos-2-enoic acid); C27:1{2} |
| (Mon) |
montanic acid (octacosanoic acid); C28:0 |
| (3HOMon) |
3-hydroxy-octacosanoic acid; C28:0 |
| (27HOMon) |
27-hydroxy-octacosanoic acid; C28:0 |
| (27oxoMon) |
27-oxo-octacosanoic acid; C28:0 |
| (Mel) |
melissic acid (triacontanoic acid); C30:0 |
| (Mycolic) |
corynomycolic acid (C32); mycolic acid (class: 2-tetradecyl-3-hydroxy-derivatives of fatty acids) |
| (Lacceroic) |
lacceroic acid (dotriacontanoic acid); C32:0 |
| (3HOC32={19}) |
3-hydroxy-dotriacont-19-enoic acid; C32:1 |
| (Psyllic) |
psyllic acid (tritriacontanoic acid); C33:0 |
| (Geddic) |
geddic acid (tetratriacontanoic acid); C34:0 |
| (Ceroplastic) |
ceroplastic acid (pentatriacontanoic acid); C35:0 |
| (Gc) |
glycolic acid (2-hydroxyacetic acid) |
| (3HOPro) |
beta-lactic acid (3-hydroxypropanoic acid) |
| (GroA) |
glyceric acid (2,3-dihydroxypropanoic acid). WURCS is for 1-O(C=O)-linked Lac |
| (Lac) |
lactic acid (2-hydroxypropanoic acid) (substituent for 2-ether: 1-carboxyethyl). WURCS is for 1-O-linked Lac |
| (2HOBut) |
2-hydroxybutanoic acid |
| (3HOBut) |
3-hydroxybutanoic acid; D-3HO-butyric = (3R)-3HO-butyric |
| (4HOBut) |
4-hydroxybutanoic acid |
| (2,4HOBut) |
2,4-dihydroxybutanoic acid (3d-glycero-tetronic acid) |
| (3,4HOBut) |
3,4-dihydroxybutanoic acid |
| (3,5HOHex) |
3,5-dihydroxyhexanoic acid; general |
| (SS3,5HOHex) |
3S,5S-dihydroxyhexanoic acid |
| | Sphingoids |
| (Sph) |
any sphingosine, any sphingenine (2S,3R,4E-2-amino-4-en-1,3-diol) (4E-sphingenine) |
| (SphC16) |
hexadecasphingosine; hexadecasphingenine (2S,3R,4E-2-amino-4-hexadecene-1,3-diol) (4E-hexadecasphingenine) |
| (SphC18) |
sphingosine; sphingenine (2S,3R,4E-2-amino-4-octadecene-1,3-diol) (4E-sphingenine) |
| (SphC20) |
icosasphingosine; icosasphingenine (2S,3R,4E-2-amino-4-icosadecene-1,3-diol) (4E-icosasphingenine) |
| (SphC22) |
sphingosine C22; sphingenine C22 |
| (cis-Sph) |
any cis-sphingenine (2S,3R,4Z-2-amino-4-en-1,3-diol) (4Z-sphingenine) |
| (cis-SphC16) |
cis-hexadecasphingosine; cis-hexadecasphingenine (2S,3R,4Z-2-amino-4-hexadecene-1,3-diol) (4Z-hexadecasphingenine) |
| (cis-SphC18) |
cis-sphingosine; cis-sphingenine (2S,3R,4Z-2-amino-4-octadecene-1,3-diol) (4Z-sphingenine) |
| (cis-SphC20) |
cis-icosasphingosine; cis-icosasphingenine (2S,3R,4Z-2-amino-4-icosadecene-1,3-diol) (4Z-icosasphingenine) |
| (cis-SphC22) |
cis-sphingosine C22; cis-sphingenine C22 |
| (phSph) |
any phytosphingosine (2S,3S,4R-2-amino-1,3,4-triol) |
| (phSphC16) |
hexadecaphytosphingosine; hexadecaphytosphinganine (2S,3S,4R-2-amino-hexadecane-1,3,4-triol) |
| (phSphC18) |
phytosphingosine; phytosphinganine (2S,3S,4R-2-amino-octadecane-1,3,4-triol) |
| (phSphC20) |
icosaphytosphingosine; icosaphytosphinganine (2S,3S,4R-2-amino-icosadecane-1,3,4-triol) |
| (phSphC22) |
phytosphingosine C22; phytosphinganine C22 |
| (Sphn) |
any sphinganine (D-erythro- or D-threo-2-amino-1,3-diol C14-24) |
| (SRSphnC16) |
SR-hexadecasphynganine (D-erythro-2-amino-1,3-hexadecanediol) |
| (SRSphnC18) |
SR-sphinganine (D-erythro-2-amino-1,3-octadecanediol) |
| (SRSphnC20) |
SR-icosasphinganine (D-erythro-2-amino-1,3-icosanediol) |
| (SRSphnC22) |
SR-sphinganine C22 |
| (RRSphnC16) |
RR-hexadecasphynganine (D-threo-2-amino-1,3-hexadecanediol) |
| (RRSphnC18) |
RR-sphinganine (D-threo-2-amino-1,3-octadecanediol) |
| (RRSphnC20) |
RR-icosasphinganine (D-threo-2-amino-1,3-icosanediol) |
| (RRSphnC22) |
RR-sphinganine C22 |
| (Sphd) |
any 4E,8E-sphingadienine |
| (SphdC18) |
4E,8E-sphingadienine |
| (SR9b1SphdC19) |
(2S,3R,4E,8E)-9-methyl-4,8-sphingadienine-C18 |
| (9b1SphdC19) |
(4E,8E)-9-methyl-4,8-sphingadienine-C18; S/R-configuration is unknown |
| (SR9b1SphdC18) |
(2S,3R,4E,8E)-9-methyl-4,8-sphingadienine-C17 |
| (Spht) |
any 4E,8E,10E-sphingatrienine |
| | Nucleosides |
| (nucA) |
adenosine (A, bDRibf + 6-aminopurine) |
| (nucdA) |
deoxyadenosine (dA, bD2dRibf + 6-aminopurine) |
| (nucG) |
guanosine (G, bDRibf + 2-amino-6-hydroxypurine) |
| (nucdG) |
deoxyguanosine (dG, bD2dRibf + 2-amino-6-hydroxypurine) |
| (nucT) |
thymidine (T, bDRibf + 5-methyluracil) |
| (nucdT) |
deoxythymidine (dT, bD2dRibf + 5-methyluracil) |
| (nucC) |
cytidine (C, bDRibf + 4-amino-1H-pyrimidine-2-one) |
| (nucdC) |
deoxycytidine (dC, bD2dRibf + 4-amino-1H-pyrimidine-2-one) |
| (nucU) |
uridine (U, bDRibf + 2-oxy-4-oxy-pyrimidine) |
| (nucdU) |
deoxyuridine (dU, bD2dRibf + 2-oxy-4-oxy-pyrimidine) |
| | Inositol derivatives |
| (myoIno) |
myo-inositol (cis-1,2,3,5-trans-4,6-cyclohexanehexol) [2OH ax, other OH eq] |
| (scylloIno) |
scyllo-inositol (cis-1,3,5-trans-2,4,6-cyclohexanehexol) [all OH eq] |
| (mucoIno) |
muco-inositol (cis-1,2,4,5-trans-3,6-cyclohexanehexol) |
| (chiroIno) |
chyro-inositol (D-form: cis-1,2,4-trans-3,5,6-cyclohexanehexol) |
| (neoIno) |
neo-inositol (cis-1,2,3-trans-4,5,6-cyclohexanehexol) |
| (alloIno) |
allo-inositol (cis-1,2-trans-3,4,5,6-cyclohexanehexol) |
| (epiIno) |
epi-inositol (cis-1-trans-2,3,4,5,6-cyclohexanehexol) |
| (cisIno) |
cis-inositol (cis-1,2,3,4,5,6-cyclohexanehexol) |
| (myoIno2N) |
2-deoxy-2-amino-myo-inositol |
| (2dmyoIno3N) |
2,3-dideoxy-3-amino-myo-inositol |
| (myoIno1N3N) |
1,3-dideoxy-1,3-diamino-myo-inositol (2-epi-streptamine) |
| | Other monovalent residues |
| (F) |
fluorine |
| (NH2) |
ammonia |
| (NFo) |
formamide (used e.g. in NFo(1-6)aDGalpA) |
| (Ph) |
phenol |
| (PhNO2) |
@paranitrolhenol~ |
| (Cm) |
carbamic acid (H2N-COOH) (WURCS is given for N-linked Cm) |
| (Am) |
acetimidic acid (HO-C(=NH)-CH3) |
| (Allyl) |
allyl alcohol |
| (Bn) |
benzoic alcohol; hydroxymethyl is C7 |
| (Bz) |
benzoic acid; carboxyl is C7 |
| (Me) |
methanol |
| (Et) |
ethanol |
| (Pr) |
propanol |
| (iPr) |
isopropanol |
| (Bu) |
butanol |
| (tBu) |
tret-butanol |
| (Pe) |
pentanol |
| (Hx) |
hexanol |
| (Hp) |
heptanol |
| (Oc) |
octanol |
| (Nn) |
nonanol |
| (Dec) |
decanol |
| (Und) |
undecanol |
| (Dod) |
dodecanol |
| (Phyt) |
phytanol (3,7,11,15-tetramethyl-hexadecanol); E20, R,S-configurations unknown |
| | Other residues |
| (Oli) |
2,6-dideoxy-arabino-hexose (olivose, 2d-Qui = 2d-Rha), 3OMe-derivative = oleandrose |
| (1dOli) |
1,2,6-trideoxy-arabino-hexose (olivose in C-glycoside) |
| (Boi) |
2,6-dideoxy-xylo-hexose (boivinose, 2d6d-Gul = 2d6d-Ido), 3OMe-derivative = sarmentose |
| (Oli4N) |
4-amino-2,4,6-trideoxy-arabino-hexose |
| (Oli3N) |
3-amino-2,3,6-trideoxy-arabino-hexose (3-amino-olivose, acosamine when L) |
| (Ham) |
2-C-(hydroxymethyl)ribose (hamamelose) |
| (Ere3N3CMe) |
3-amino-2,3,6-trideoxy-3-C-methyl-L-arabino-hexose (eremosamine) |
| (Pau4CHe) |
2,6-dideoxy-4C-(1-hydroxyethyl)-lyxo-hexose (paulomycose, default: L, stereo at C7 unknown) |
| (Axe3CMe) |
2,6-dideoxy-3C-methyl-L-xylo-hexose (axenose) |
| (Fus) |
fusaminic acid (5-amino-3,5,9-trideoxy-L-glycero-L-gluco-nonulosonic) |
| (Lincose1SMe6N) |
6-amino-6,8-dideoxy-1-methylthio-D-erythro-D-galactose (methyl-thio-lincosamide); C9 is S-methyl group |
| (Etg) |
ethylene glycol |
| (Etg-al) |
glycolaldehyde |
| (Eru) |
erythrulose |
| (3,4,8HOPhet) |
3,4,8-trihydroxy-ethylbenzene (phenylethan-3,4,8-triol, hydroxytyrosol) |
| (Sal) |
2-hydroxybenzoic acid (salicylic acid); carboxyl is C7 |
| (3HOBz) |
3-hydroxybenzoic acid (m-hydroxybenzoic acid); carboxyl is C7 |
| (4HOBz) |
4-hydroxybenzoic acid (p-hydroxybenzoic); carboxyl is C7 |
| (2NBz) |
2-aminobenzoic acid (anthranilic acid); carboxyl is C7 |
| (4NBz) |
4-aminobenzoic acid; carboxyl is C7 |
| (Prcat) |
3,4-dihydroxybenzoic acid (protocatechuic acid); carboxyl is C7 |
| (bRes) |
2,4-dihydroxybenzoic acid (beta-resorcyclic acid); carboxyl is C7 |
| (Gent) |
2,5-dihydroxybenzoic acid (gentisic acid); carboxyl is C7 |
| (2,3HOBz) |
2,3-dihydroxybenzoic acid; carboxyl is C7 |
| (Cin) |
cinnamic acid (E-3-phenylprop-2-enoic); atom numbering is traditional (C1 is in a benzene ring) |
| (pCoum) |
p-coumaric acid (E-3-(4-hydroxyphenyl)-2-propenoic) ; atom numbering is traditional (C1 is in a benzene ring) |
| (mCoum) |
m-coumaric acid (E-3-(3-hydroxyphenyl)-2-propenoic) ; atom numbering is traditional (C1 is in a benzene ring) |
| (oCoum) |
o-coumaric acid (E-3-(2-hydroxyphenyl)-2-propenoic) ; atom numbering is traditional (C1 is in a benzene ring) |
| (Caf) |
caffeic acid (E-3-(3,4-dihydroxyphenyl)-2-propenoic) ; atom numbering is traditional (C1 is in a benzene ring) |
| (Fer) |
ferulic acid (E-3-(4-hydroxy-3-methoxy-phenyl)prop-2-enoic) ; atom numbering is traditional (C1 is in a benzene ring) |
| (Sin) |
sinapic/sinapinic acid (E-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoic) ; atom numbering is traditional (C1 is in a benzene ring) |
| (Ors) |
2,4-dihydroxy-6-methylbenzoic acid (orsellinic acid), carboxyl group is C7 |
| (Polygalacic) |
polygalacic acid (olean-12-en-2b,3b,16a,23-tetrol-28-oic acid), atom numbering: http://patentimages.storage.googleapis.com/EP2011517A1/imgf0003.png |
| (Oleanolic) |
oleanolic/oleanic acid (olean-12-en-3b-ol-28-oic acid) (http://en.wikipedia.org/wiki/Oleanolic_acid) |
| (Glycyrrhetic) |
enoxolone; glycyrrhetic, glycyrrhetinic (11-oxoolean-12-en-3b-ol-30-oic) acid (http://en.wikipedia.org/wiki/Glycyrrhetinic_acid) |
| (Diosgenin) |
diosgenin (25R-spirost-5-en-3b-ol), atom numbering: https://www.mdpi.com/molecules/molecules-25-03546/article_deploy/html/images/molecules-25-03546-g001.png |
| (Hederagenin) |
hederagenin (olean-12-en-3b,23-diol-28-oic acid), atom numbering: https://ars.els-cdn.com/content/image/1-s2.0-S0278691509001951-gr1.jpg |
| (Echinocystic) |
echinocystic acid (olean-12-en-3b,16a-diol-28-oic acid) |
| (Steviol) |
steviol ((5b,8a,9b,10a,13a)-13-hydroxykaur-16-en-18-oic acid) |
| (SoyasapogenolB) |
soyasapogenol B (olean-12-en-3b,22b,24-triol) |
| (Protopanaxadiol20s) |
20S-protopanaxadiol (dammar-24-en-3b,12b,20S-triol), atom numbering: https://www.researchgate.net/publication/236080758/figure/fig1/AS:601683658829855@1520463971501/The-structure-and-atom-numbering-of-M1.png |
| (Solanidine) |
solanidine (solanid-5-en-3b-ol), atom numbering: https://ars.els-cdn.com/content/image/1-s2.0-S0735821098800046-fx1.gif |
| (Protopanaxatriol20s) |
20S-protopanaxatriol (dammar-24-en-3b,6a,12b,20S-tetrol) |
| (SoyasapogenolA) |
soyasapogenol A (olean-12-en-3b,21b,22b,24-tetrol) |
| (Menthiafolic) |
menthiafolic acid (6-hydroxy-2,6-dimethyl-octa-2E,7-dienoic acid), can be R/S at C6 |
| (Catalpol) |
catalpol aglycon (as in Pubchem, hydroxy function at 1,6,10; atom 2 is O) |
| (Quercetin) |
3,5,7,3',4'-pentahydroxyflavone; (atom 1 is O, "4a" is 9, "8a" is 10, phenyl ring is 11-16) https://www.researchgate.net/profile/Katarzyna_Lemanska/publication/11763389/figure/fig5/AS:649141365506048@1531778770095/Chemical-structure-and-atom-numbering-of-the-hydroxyflavones-taking-quercetin.png |
| (Kaempferol) |
3,5,7,4'-tetrahydroxyflavone (atom 1 is O) |
| (Myricetin) |
3,5,7,3',4',5'-hexahydroxyflavone (atom 1 is O) |
| (Cyanidin) |
3,3',4',5,7-pentahydroxyflavylium (atom 1 is O) |
| (Luteolin) |
5,7,3',4'-tetrahydroxyflavone (atom 1 is O) |
| (16HOPhyt) |
3,7,11,15-tetramethyl-hexadecan-1,16-diol; E20, R,S-configurations unknown |
| (Hm) |
hydroxymethyl substituent (formic acetal; added for compatibility) |
| (Pyr) |
pyruvic acetal (2-oxopropanoic acid acetal); substituent: 1-carboxyethylidene |
| (EtN) |
2-aminoethanol (ethanolamine) |
| (Aep) |
2-amino-ethylphosphonic acid |
| (Cho) |
choline (2-(trimethylammonio)ethanol) |
| (CetEtN) |
2-(1-carboxyethylamino)ethanol [N-(2-hydroxyethyl)alanine]; alternative WURCS A2m_2*NCCO |
| (phCer-ol) |
phthioceranol; HOCH2-(CH2)16-CHOH-CH2-CHOH-(CH2)4-CH(CH3)-CH(OCH3)-Et |
| (P) |
phosphoric acid |
| (S) |
sulfuric acid |
| (C) |
carbonic acid |
| (Mal) |
malonic acid (HOOC-CH2-COOH) |
| (Suc) |
succinic acid (HOOC-CH2-CH2-COOH) |
| (2HOSuc) |
malic acid (2-hydroxysuccinic acid); (2R)-2HO-succinic = D-malic |
| (Glt) |
glutaric acid (HOOC-CH2-CH2-CH2-COOH) |
| (2HOGlt) |
2-hydroxyglutaric acid |
| (3HO3MeGlt) |
3-hydroxy-3-methylglutaric acid |
| (RR3HO3MePro-5-oxo) |
(2R,3R)-3-hydroxy-3-methyl-5-oxoproline |
| (3HO2,3MePro-5-oxo) |
3-hydroxy-2,3-dimethyl-5-oxoproline (RR, SS, RS, SR = unknown) |
| (3,4HO1,3MePro-5-oxo) |
3,4-dihydroxy-N,3-dimethyl-5-oxoproline |
| (2,4HO3,3,4MePro-5-oxo) |
2,4-dihydroxy-3,3,4-trimethyl-5-oxoproline |
| (Pro-5-oxo) |
5-oxoprolin (pyroglutamic acid, pidolic acid); D or L |
| | Superclasses |
| (SUG) |
superclass: any monosaccharide |
| (TET) |
superclass: tetrose |
| (PEN) |
superclass: pentose |
| (HEX) |
superclass: hexose |
| (HEP) |
superclass: heptose |
| (DDHEP) |
superclass: DD-heptose |
| (LDHEP) |
superclass: LD-heptose |
| (OCT) |
superclass: octose |
| (NON) |
superclass: nonose |
| (DEC) |
superclass: decose |
| (LIP) |
superclass: lipid residue |
| (CER) |
superclass: ceramide (N-acylated sphyngoid) |
| (SPH) |
superclass: sphyngoid |
| (PEP) |
superclass: aminoacid |
| (ALK) |
superclass: alcohol residue (alkyl) |
| (ANY) |
superclass: any residue |
| (MVA) |
superclass: any monovalent residue |
| (INO) |
superclass: any inositol |