CSDB monomer namespace

The table lists residues present in the database and their occurencies.
Click + to view occurencies and atomic patterns for different forms of each residue.
Column explanations are below the table.

To view a list of supported residue and superclass names (including those not present in the database) click here: Residue subdatabase dump


Operations on all residues: Expand all Collapse all Filter to the last years

To re-sort the list click the according column name.

Residue Size Type Abundance Structures WURCSProton count / Atom types Description
+1,6anhMurnon*ald66?2122h_1-6_2*N_3*OC^RCO/4=O/3C1111121031,6-anhydro-2-amino-3-[(R)-1-carboxyethyl]-2-deoxy-D-glucose (1,6-anhydromuramic acid)
+1dGalhexald11d2112h2111121-deoxy-galactose (the same as linear form of 1,5-anhGal-ol, which still has 1-5 cycle)
+1dGlchexald11d2122h2111121-deoxy-glucose (the same as linear form of 1,5-anhGlc-ol, which still has 1-5 cycle)
+2,5anhManhexald2828A1122h_2-51111122,5-anhydromannose
+2,5anhTalhexald1111A1112h_2-51111122,5-anhydrotalose
+2,6daraHexhexald12995?d122m1211132,6-dideoxy-arabino-hexose (olivose, 2d-Qui = 2d-Rha), 3OMe-derivative = oleandrose
+2,6daraHex3Nhexald74?12d2m_3*N1211133-amino-2,3,6-trideoxy-arabino-hexose
+2,6daraHex4Nhexald22?d122m_4*N1211134-amino-2,4,6-trideoxy-arabino-hexose
+2,6dlyxHexhexald4035?d112m1211132,6-dideoxy-lyxo-hexose (diginose, 2d-Fuc = 2d6d-Tal), D-form: oliose
+2,6dlyxHex3Nhexald33?11d2m_3*N1211133-amino-2,3,6-trideoxy-lyxo-hexose
+2,6dxylHexhexald44?d212m1211132,6-dideoxy-xylo-hexose (sarmentose = boiviniose, 2d6d-Gul = 2d6d-Ido)
+2daraHexhexald33?d122h1211122-deoxy-arabino-hexose (2d-Glc, 2d-Man)
+2daraHexAhexald88?d122A1211102-deoxy-arabino-hexuronic acid (2-deoxyglucuronic acid)
+2dRibpenald11?d22h121122-deoxy-erytro-pentose (2d-Rib = 2d-Ara)
+2dthrPen4Npenald55?d12h_4*N121124-amino-2,4-dideoxy-threo-pentose
+3,6anhGalhexald199?2112h_3-61111123,6-anhydro-galactose
+3,6dthrHex-4-ulohexald22?1dU2m1120133,6-dideoxy-threo-hexos-4-ulose
+3deryPenpenald66?2d2h112123-deoxy-erytro-pentose (3d-Rib = 3d-Xyl)
+3dlyxHexhexald11?1d12h1121123-deoxy-lyxo-hexose
+3dthrPenpenald88?1d2h112123-deoxy-threo-pentose
+3dxylHexhexald22?2d12h1121123-deoxy-xylo-hexose
+4,6dlyxHexhexald11?11d2m1112134,6-dideoxy-lyxo-hexose
+4,6dxylHexhexald44?21d2m1112134,6-dideoxy-xylo-hexose (3-O-methyl derivative = halcose)
+4,6dxylHex3Nhexald55?21d2m_3*N1112133-amino-3,4,6-trideoxy-xylo-hexose
+4daraHexhexald1712?12d2h1112124-deoxy-arabino-hexose
+4deryHex4enhexald22?22eEh1111024-deoxy-erythro-hex-4-enose
+4deryHex4enAhexald77?22eEA1111004-deoxy-erythro-hex-4-enuronic acid
+4deryHex4enNAhexald22?22eEA_2*N1111002-amino-2,4-dideoxy-erythro-hex-4-enuronic acid
+4dlyxHexhexald22?11d2h1112124-deoxy-lyxo-hexose
+4dthrHex4enhexald44?12eEh1111024-deoxy-threo-hex-4-enose
+4dthrHex4enAhexald8785?12eEA1111004-deoxy-threo-hex-4-enuronic acid
+4dthrHex4enNAhexald1717?12eEA_2*N1111002-amino-2,4-dideoxy-threo-hex-4-enuronic acid
+4dxylHexhexald2929?21d2h1112124-deoxy-xylo-hexose
+6dAllhexald2222?2222m1111136-deoxyallose
+6dAll1Nhexald11?2222m_1*N1111131-amino-6-deoxyallose
+6dAlthexald7454?1222m1111136-deoxyaltrose
+6dAltNhexald55?1222m_2*N1111132-amino-2,6-dideoxyaltrose
+6dAltN4Nhexald99?1222m_2*N_4*N1111132,4-diamino-2,4,6-trideoxyaltrose
+6daltHephepald1110?1222dh11111226-deoxy-altro-heptose
+6daraHex-4-ulohexald22?12U2m1110136-deoxy-arabino-hexos-4-ulose
+6daraHexN-4-ulohexald22?12U2m_2*N1110132-amino-2,6-dideoxy-arabino-hexos-4-ulose
+6dgalHephepald75?2112dh11111226-deoxy-galacto-heptose
+6dGulhexald1311?2212m1111136-deoxygulose
+6dGul3CMehepald11?2612m_3*C11011336-deoxy-3-C-methylgulose (virenose)
+6dgulHephepald1511?2212dh11111226-deoxy-gulo-heptose
+6didoHephepald43?1212dh11111226-deoxy-ido-heptose
+6dlyxHep-4-ulohepald11?11U2dh11101226-deoxy-lyxo-heptos-4-ulose
+6dlyxHex-4-ulohexald55?11U2m1110136-deoxy-lyxo-hexos-4-ulose
+6dlyxHexN-4-ulohexald11?11U2m_2*N1110132-amino-2,6-dideoxy-lyxo-hexos-4-ulose
+6dmanHephepald6154?1122dh11111226-deoxy-manno-heptose
+6dribHex-3-ulohexald66?2U22m1101136-deoxy-ribo-hexos-3-ulose
+6dTalhexald403312?1112m1111136-deoxytalose
+6dTalNhexald1515?1112m_2*N1111132-amino-2,6-dideoxytalose (pneumosamine if D)
+6dtalHephepald22?1112dh11111226-deoxy-talo-heptose
+6dxylHex-3-ulohexald22?2U12m1101136-deoxy-xylo-hexos-3-ulose
+6dxylHex-4-ulohexald33?21U2m1110136-deoxy-xylo-hexos-4-ulose
+6dxylHexN-4-ulohexald3030?21U2m_2*N1110132-amino-2,6-dideoxy-xylo-hexos-4-ulose
+Abehex*ald173152?2d12m1121133,6-dideoxy-D-xylo-hexose (abequose), 3dFuc=3,6dGul
+AceAhex*ald33?161m_3*CO/2=O1101303C-carboxy-5-deoxy-L-xylofuranose (aceric acid)
+Aco3Nhex*ald63?d121m_3*N1211133-amino-2,3,6-trideoxy-L-xylo-hexose (acosamine)
+Allhexald1818?2222h111112allose
+All1N5NAhexald3636?2222A_1*N_5*N1111101,5-diamino-1,5-deoxy-alluronic acid
+AllNhexald86?2222h_2*N1111122-amino-2-deoxyallose
+Althexald4545?1222h111112altrose
+AltAhexald2020?1222A111110altruronic acid
+AltNAhexald2720?1222A_2*N1111102-amino-2-deoxyaltruronic acid
+Amihexald33?dd22m1221132,3,6-trideoxy-erythro-hexose (amicetose, default: D)
+Apipenald106104?26h_3*CO11022apiose (3-C-(hydroxymethyl)-erythro-tetrose)
+Arapenald25001473?122h11112arabinose
+Ara1Npenald11?122h_1*N111121-amino-1-deoxyarabinose
+Ara4Npenald479381?122h_4*N111124-amino-4-deoxyarabinose
+Aschex*ald1413?2d11m1121133,6-dideoxy-L-arabino-hexose (ascarilose), 3dRha=3,6dAlt
+Axe3CMehep*ald66?d121m_3*C12011332,6-dideoxy-3C-methyl-L-xylo-hexose (axenose)
+Caryophyllosedod*ald2016?2d21d222m_4*1C^RC/2O*21120121113133,6,10-trideoxy-4-C-[(R)-1-hydroxyethyl]-D-erythro-D-gulo-decose
+Caryosenon*ald266?1d61215m1120111034,8-cyclo-3,9-dideoxy-L-erythro-D-ido-nonose
+Colhex*ald147101?1d21m1121133,6-dideoxy-L-xylo-hexose (colitose), 3dFuc=3,6dGul
+DDaltHephep*ald55?12222h1111112D-glycero-D-altro-heptose
+DDgalHephep*ald2112?21122h1111112D-glycero-D-galacto-heptose
+DDglcHephep*ald33?21222h1111112D-glycero-D-gluco-heptose
+DDmanHephep*ald1059689?11222h1111112D-glycero-D-manno-heptose
+Dighexald257145?d222m1211132,6-dideoxy-ribo-hexose (digitoxose, 2d6d-All = 2d6d-Alt), 3OMe-derivative = cymarose
+Dig3CMehepald33?d622m_3*C12011332,6-dideoxy-3-C-methyl-ribohexose (3-C-methyl-digitoxose)
+DLglcHephep*ald1212?12112h1111112D-glycero-L-gluco-heptose
+Ere3N3CMehep*ald42?d611m_3*N_3*C12011333-amino-2,3,6-trideoxy-3-C-methyl-L-arabino-hexose (eremosamine)
+Erwiniosedec*ald66?2d21d2m_4*1C^RC/2O*211201213133,6,8-trideoxy-4-C-[(R)-1-hydroxyethyl]-D-gulo-octose
+Erytetald11?22h1112erythrose
+Fuchexald22851859?2112m1111136-deoxygalactose (fucose)
+Fuc3Nhexald234202?2112m_3*N1111133-amino-3,6-dideoxygalactose
+Fuc4Nhexald6564?2112m_4*N1111134-amino-4,6-dideoxygalactose (thomosamine if D)
+FucNhexald644587?2112m_2*N1111132-amino-2,6-dideoxygalactose
+FucN4Nhexald189170?2112m_2*N_4*N1111132,4-diamino-2,4,6-trideoxygalactose
+Galhexald1481510027?2112h111112galactose
+Gal1Nhexald22?2112h_1*N1111121-amino-1-deoxygalactose (used for N-glycans)
+Gal3Fhexald22?2112h_3*F1111123-deoxy-3-fluorogalactose
+GalAhexald19011453?2112A111110galacturonic acid
+GalNhexald35673122?2112h_2*N1111122-amino-2-deoxygalactose
+GalN1Nhexald33?2112h_1*N_2*N1111121,2-diamino-1,2-dideoxygalactose (used for N-glycans)
+GalN3N4NAhexald119?2112A_2*N_3*N_4*N1111102,3,4-triamino-2,3,4-trideoxygalacturonic acid
+GalN3NAhexald3529?2112A_2*N_3*N1111102,3-diamino-2,3-dideoxygalacturonic acid
+GalNAhexald410309?2112A_2*N1111102-amino-2-deoxygalacturonic acid
+Gar3Nhep*ald33?215h_3*NC/2C_4*C11102334C-methyl-3-methylamino-3-deoxy-L-arabinose (garosamine)
+Glchexald2640015435?2122h111112glucose
+Glc1Nhexald4444?2122h_1*N1111121-amino-1-deoxyglucose (used for N-glycans)
+Glc1Shexald66?2122m_1*S1111121-thioglucose (with C-SH bond)
+Glc3Nhexald55?2122h_3*N1111123-amino-3-deoxy-glucose (kanosamine when D)
+Glc3N6Nhexald11?2122h_3*N_6*N1111123,6-diamino-3,6-dideoxyglucose
+Glc3NAhexald169?2122A_3*N1111103-amino-3-deoxyglucuronic acid
+Glc6Nhexald22?2122h_6*N1111126-amino-6-deoxyglucose
+GlcAhexald31512765?2122A111110glucuronic acid
+GlcNhexald1239610088?2122h_2*N1111122-amino-2-deoxyglucose
+GlcN1Nhexald251251?2122h_1*N_2*N1111121,2-diamino-1,2-dideoxyglucose (used for N-glycans)
+GlcN3Nhexald148144?2122h_2*N_3*N1111122,3-diamino-2,3-dideoxyglucose
+GlcN3NAhexald156136?2122A_2*N_3*N1111102,3-diamino-2,3-dideoxyglucuronic acid
+GlcN4NAhexald22?2122A_2*N_4*N1111102,4-diamino-2,4-dideoxyglucuronic acid
+GlcN6Nhexald1916?2122h_2*N_6*N1111122,6-diamino-2,6-dideoxyglucose
+GlcNAhexald6963?2122A_2*N1111102-amino-2-deoxyglucuronic acid
+Gulhexald99?2212h111112gulose
+GulAhexald7564?2212A111110guluronic acid
+GulNhexald33?2212h_2*N1111122-amino-2-deoxygulose
+GulN3NAhexald4039?2212A_2*N_3*N1111102,3-diamino-2,3-dideoxyguluronic acid
+GulNAhexald3430?2212A_2*N1111102-amino-2-deoxyguluronic acid
+Idohexald11?1212h111112idose
+IdoAhexald2020?1212A111110iduronic acid
+IdoNhexald22?1212h_2*N1111122-amino-2-deoxyidose
+IdoN6Nhexald66?1212h_2*N_6*N1111122,6-diamino-2,6-dideoxyidose
+iMurnon*ald22?2122h_2*N_3*OC^SCO/4=O/3C1111121032-amino-3-[(S)-1-carboxyethyl]-2-deoxy-D-glucose (isomuramic acid)
+iYeroct*ald1010?2d12m_4*1C^RC/2O*2112013133,6-dideoxy-4-C-[(R)-1-hydroxyethyl]-D-xylo-hexose (isoyersiniose or yersiniose B)
+LDglcHephep*ald44?21221h1111112L-glycero-D-gluco-heptose
+LDidoHephep*ald44?12121h1111112L-glycero-D-ido-heptose
+LDmanHephep*ald58672285?11221h1111112L-glycero-D-manno-heptose
+Lyxpenald1511?112h11112lyxose
+Lyx3CHmhexald11?152h_3*CO1101223-C-(hydroxymethyl)lyxose (dihydrohydroxystreptose)
+Manhexald214437597?1122h111112mannose
+Man1Nhexald3434?1122h_1*N1111121-amino-1-deoxymannose
+Man3CMehepald54?1522h_3*C11011233-C-methylmannose
+Man3Nhexald22?1122h_3*N1111123-amino-3-deoxymannose
+Man4Nhexald64?1122h_4*N1111124-amino-4-deoxymannose
+ManAhexald9472?1122A111110mannuronic acid
+ManNhexald368305?1122h_2*N1111122-amino-2-deoxymannose
+ManN3NAhexald217151?1122A_2*N_3*N1111102,3-diamino-2,3-dideoxymannuronic acid
+ManNAhexald127112?1122A_2*N1111102-amino-2-deoxymannuronic acid
+Murnon*ald219188?2122h_2*N_3*OC^RCO/4=O/3C1111121032-amino-3-[(R)-1-carboxyethyl]-2-deoxy-D-glucose (muramic acid)
+Mur-lactamnon*ald1813?2122h_2*N_3*OC^RCO/4=O/3C_2-81111121032-amino-3-[(R)-1-carboxyethyl]-2-deoxy-D-glucose d-lactam (muramic acid lactam)
+Parhex*ald6965?2d22m1121133,6-dideoxy-D-ribo-hexose (paratose), 3dQui=3,6dAll
+Pau4CHeoctald2929?d112m_4*1CC/2O*2121013132,6-dideoxy-4C-(1-hydroxyethyl)-lyxo-hexose (paulomycose, default: L, stereo at C7 unknown)
+PurChex*ald11?2dd2h_2*N_6*N1122122,6-diamino-2,3,4,6-tetradeoxy-D-erythro-hexose (purpurosamine C)
+Quihexald119107?2122m1111136-deoxyglucose (quinovose)
+Qui1N4Nhexald11?2122m_1*N_4*N1111131,4-diamino-1,4,6-trideoxyglucopyranose
+Qui3Nhexald214194?2122m_3*N1111133-amino-3,6-dideoxyglucose
+Qui4Nhexald222219?2122m_4*N1111134-amino-4,6-dideoxyglucose (viosamine if D)
+QuiNhexald492446?2122m_2*N1111132-amino-2,6-dideoxyglucose
+QuiN1N4Nhexald22?2122m_1*N_2*N_4*N1111131,2,4-triamino-1,2,4,6-tetradeoxyglucopyranose (used for N-glycans)
+QuiN3Nhexald22?2122m_2*N_3*N1111132,3-diamino-2,3,6-trideoxyglucose
+QuiN4Nhexald236234?2122m_2*N_4*N1111132,4-diamino-2,4,6-trideoxyglucose (bacillosamine)
+Rhahexald92705643?1122m1111136-deoxymannose (rhamnose)
+Rha3CMehepald107?1522m_3*C11011333-C-methylrhamnose
+Rha3CMe4Nhepald11?1522m_3*C_4*N11011333-C-methyl-4-deoxy-4-amino-rhamnose (kansosamine)
+Rha3Nhexald1313?1122m_3*N1111133-amino-3,6-dideoxymannose (mycosamine if D)
+Rha4Nhexald396194?1122m_4*N1111134-amino-4,6-dideoxymannose (perosamine if D)
+RhaNhexald1413?1122m_2*N1111132-amino-2,6-dideoxymannose
+RhaN3Nhexald2323?1122m_2*N_3*N1111132,3-diamino-2,3,6-trideoxymannose
+RhaN4Nhexald33?1122m_2*N_4*N1111132,4-diamino-2,4,6-trideoxymannose
+Rhohex*ald2920?dd21m1221132,3,6-trideoxy-L-threo-hexose (rhodinose)
+Rhonoctald1712?d112m_3*NC/2C121113333-dimethylamino-2,3,6-trideoxy-lyxo-hexose (rhodosamine)
+Ribpenald338296?222h11112ribose
+RibApenald22?222A11110riburonic acid
+ribHex-3-ulohexald11?2U22h110112ribo-hexos-3-ulose
+ribHexNA-3-ulohexald11?2U22A_2*N1101102-amino-2-deoxy-ribo-hexos-3-ulose-uronic acid
+S6Fuchexald22?2112m_6*SO/2=O/2=O1111126-sulphofucose (with C-S bond)
+S6Quihexald1111?2122m_6*SO/2=O/2=O1111126-sulphoquinovose (with C-S bond)
+Shewanellosenon*ald77?2112m_2*NCC/3=O_4*1CCCN/4=O/3O*2/3O*31110132002-acetamido-4-C-(3'-carboxamide-2',2'-dihydroxypropyl)-2,6-dideoxy-D-galactose
+Talhexald66?1112h111112talose
+TalNhexald11?1112h_2*N1111122-amino-2-deoxytalose
+thrPen-4-ulopenald11?12Oh11102threo-pentos-4-ulose (ald function at C1, keto at C4)
+Tyvhex*ald8274?1d22m1121133,6-dideoxy-D-arabino-hexose (tyvelose), 3dRha=3,6dAlt
+Tyv4Nhex*ald11?1d22m_4*N1121134-amino-3,4,6-trideoxy-D-arabino-hexose
+Van3N3CMehep*ald11?d621m_3*N_3*C12011333-amino-2,3,6-trideoxy-3-C-methyl-L-lyxo-hexose (vancosamine)
+Xylpenald35392123?212h11112xylose
+XylNpenald33?212h_2*N111122-amino-2-deoxyxylose
+Yeroct*ald2927?2d12m_4*1C^SC/2O*2112013133,6-dideoxy-4-C-[(S)-1-hydroxyethyl]-D-xylo-hexose (yersiniose or yersiniose A)
Residue Size Type Abundance Structures WURCSProton count / Atom types Description
+1,6dFruhexket87m?122m3011131,6-dideoxy-fructose (1,6-dideoxy-arabino-hex-2-ulose)
+2,7anhKdooct*ket99A?d1122h_2-7002111122,7-anhydro-3-deoxy-D-manno-oct-2-ulosonic acid
+3,7dlyxOct-ulosonicoctket11A?d112dh002111223,7-dideoxy-lyxo-oct-2-ulosonic acid
+3daraHep-ulosonichepket11A?d122h00211123-deoxy-arabino-hept-2-ulosonic acid
+3dgroPen-ulosonicpenket11A?d2h002123-deoxy-glycero-pent-2-ulosonic acid
+3dlyxHep-ulosarichepket3426A?d112A00211103-deoxy-lyxo-hept-2-ulosaric acid (Dha_A when D)
+3dthrHex-ulosonichexket11A?d12h0021123-deoxy-threo-hex-2-ulosonic acid
+4,7anhKdooct*ket33A?d1122h_4-7002111124,7-anhydro-3-deoxy-D-manno-oct-2-ulosonic acid
+4,8anhKdooct*ket66A?d1122h_4-8002111124,8-anhydro-3-deoxy-D-manno-oct-2-ulosonic acid
+4eLegnon*ket1515A?d11122m_5*N_7*N0021111134-epilegionaminic acid (5,7-diamino-3,5,7,9-tetradeoxy-D-glycero-D-talo-non-2-ulosonic)
+6dFruhexket33h?122m2011136-deoxy-fructose (6-deoxy-arabino-hex-2-ulose)
+8eAcinon*ket44A?d21112m_5*N_7*N0021111138-epiacinetaminic acid (5,7-diamino-3,5,7,9-tetradeoxy-D-glycero-L-altro-non-2-ulosonic)
+8eLegnon*ket7574A?d21121m_5*N_7*N0021111138-epilegionaminic (5,7-diamino-3,5,7,9-tetradeoxy-L-glycero-D-galacto-non-2-ulosonic)
+8ePsenon*ket11A?d22112m_5*N_7*N0021111138-epipseudaminic acid (5,7-diamino-3,5,7,9-tetradeoxy-D-glycero-L-manno-non-2-ulosonic)
+Acinon*ket55A?d21111m_5*N_7*N002111113acinetaminic acid (5,7-diamino-3,5,7,9-tetradeoxy-L-glycero-L-altro-non-2-ulosonic)
+DD3,9dmanNon5N7N-ulosonicnon*ket11A?d11222m_5*N_7*N0021111135,7-diamino-3,5,7,9-tetradeoxy-D-glycero-D-manno-non-2-ulosonic acid
+DL3,9dgalNon5N7N-ulosonicnon*ket2323A?d12212m_5*N_7*N0021111135,7-diamino-3,5,7,9-tetradeoxy-D-glycero-L-galacto-non-2-ulosonic acid
+DL3,9dglcNon5N7N-ulosonicnon*ket55A?d12112m_5*N_7*N0021111135,7-diamino-3,5,7,9-tetradeoxy-D-glycero-L-gluco-nonulosonic acid
+Fruhexket573406h?122h201112fructose (arabino-hex-2-ulose)
+Fusnon*ket66A?d12111m_5*N002111113fusaminic acid (5-amino-3,5,9-trideoxy-L-glycero-L-gluco-nonulosonic)
+Kdnnon*ket8585A?d21122h002111112ketodeoxynononic acid (3-deoxy-D-glycero-D-galacto-non-2-ulosonic)
+Kdooct*ket43173011A?d1122h00211112ketodeoxyoctonic acid (3-deoxy-D-manno-oct-2-ulosonic acid)
+Kdo8Noct*ket2323A?d1122h_8*N002111128-amino-3,8-dideoxy-D-manno-oct-2-ulosonic acid
+Kooct*ket177177A?11122h00111112ketooctonic acid (D-glycero-D-talo-oct-2-ulosonic acid)
+LD3,9dtalNon5N7N-ulosonicnon*ket33A?d11121m_5*N_7*N0021111134,8-epilegionaminic acid (5,7-diamino-3,5,7,9-tetradeoxy-L-glycero-D-talo-non-2-ulosonic
+LDglcOct-3-ulooct*ket11h2?1221h21011112L-glycero-D-gluco-3-octulose (3-8 pyranose cycle)
+Legnon*ket6565A?d21122m_5*N_7*N002111113legionaminic acid (5,7-diamino-3,5,7,9-tetradeoxy-D-glycero-D-galacto-non-2-ulosonic)
+Leg8Nnon*ket11A?d21122m_5*N_7*N_8*N0021111138N-legionaminic acid (5,7,8-triamino-3,5,7,8,9-pentadeoxy-D-glycero-D-galacto-non-2-ulosonic)
+LL3,9dglcNon5N7N-ulosonicnon*ket11A?d12111m_5*N_7*N0021111135,7-diamino-3,5,7,9-tetradeoxy-L-glycero-L-gluco-nonulosonic acid
+Neunon*ket714541A?d21122h_5*N002111112neuraminic acid (5-amino-3,5-dideoxy-D-glycero-D-galacto-non-2-ulosonic)
+Psenon*ket173170A?d22111m_5*N_7*N002111113pseudaminic acid (5,7-diamino-3,5,7,9-tetradeoxy-L-glycero-L-manno-non-2-ulosonic)
+Pse8Nnon*ket22A?d22111m_5*N_7*N_8*N0021111138N-pseudaminic acid (5,7,8-triamino-3,5,7,8,9-pentadeoxy-L-glycero-L-manno-non-2-ulosonic)
+Sedhepket107h?1222h2011112altro-hept-2-ulose (sedoheptulose)
+Sorhexket22h?212h201112sorbose (xylo-hex-2-ulose)
+Taghexket11h?112h201112tagatose (lyxo-hex-2-ulose)
+Tag-onichexket65A?112h001112lyxo-hex-2-ulosonic acid
+Xulpenket2720h?12h20112threo-pent-2-ulose (xylulose)
Residue Size Type Abundance Structures WURCSProton count / Atom types Description
+DD3,9dthraltNon-onicnon*opn33A1d22212m0121111133,9-dideoxy-D-threo-D-altro-nononic acid
+Ery-onictetopn1717A22h0112erythronic acid
+Gal4N5N-onichexopn11A2112h_4*N_5*N0111124,5-diamino-4,5-dideoxygalactonic acid
+GlcN-onichexopn2828A2122h_2*N0111122-amino-2-deoxygluconic acid
+Gro-altriopn2121o2h112glyceraldehyde
+Gul4N5N-onichexopn33A2212h_4*N_5*N0111124,5-diamino-4,5-dideoxygulonic acid
+Gul4N5NA-onichexopn11A2212A_4*N_5*N0111104,5-diamino-4,5-dideoxygularic acid
+Man-onichexopn77A1122h011112mannonic acid
+Thre-onictetopn88A12h0112threonic acid
+XylN-onicpenopn88A212h_2*N011122-amino-2-deoxy-xylonic acid
Residue Size Type Abundance Structures WURCSProton count / Atom types Description
+1,5anhGlc-olhexol22h2122h_1-52111121,5-anhydroglucitol (= 1dGlcp in pyranose form)
+1,5daraHex-olhexol11m122dh3111221,5-dideoxy-arabinohexitol
+1dAlt-olhexol55m1222h3111121-deoxyaltritol
+1dEry-oltetol2222m22h31121-deoxyerythritol
+1dEry3N-oltetol11m22h_3*N31123-amino-1,3-dideoxyerythritol
+2,5anhMan-olhexol2525h1122h_2-52111122,5-anhydromannitol
+2,5anhTal-olhexol44h1112h_2-52111122,5-anhydrotalitol
+4dEry-oltetol66h22m21134-deoxyerythritol (alias for 1-deoxyerythritol ?)
+4dThre-oltetol55h12m21134-deoxythreitol (alias for 1-deoxytreitol ?)
+6dTal-olhexol44h1112m2111136-deoxytalitol
+Api-olpenol11h26h_3*CO21022apiol (3-C-(hydroxymethyl)-erythro-tetrol)
+Ara-olpenol9389h122h21112arabinitol
+DDidoHep-olhep*ol11h12122h2111112D-glycero-D-ido-heptitol
+DDmanHep-olhep*ol11h11222h2111112D-glycero-D-manno-heptitol
+Ery-oltetol184184h22h2112erythritol
+Etgdi*ol3629hh22ethylene glycol
+Fuc-olhexol44h2112m2111136-deoxy-D-galactitol (D-fucitol), 1-deoxy-D-galactitol (L-fucitol)
+Fuc1N-olhexol22h2112m_1*N2111131-amino-1,6-dideoxy-D-galactitol
+FucN-olhexol1515h2112m_2*N2111132-amino-2,6-dideoxy-D-galactitol / 5-amino-1,5-dideoxy-D-galactitol (D/L, respectively)
+Gal-olhexol100100h2112h211112galactitol
+GalA-olhexol11h2112A211110galactitol uronic acid (same as galactonic acid with inverted D
+GalN-olhexol1212h2112h_2*N2111122-amino-2-deoxygalactitol
+Glc-olhexol139139h2122h211112glucitol
+Glc1N-olhexol22h2122h_1*N2111121-amino-1-deoxyglucitol
+GlcN-olhexol183183h2122h_2*N2111122-amino-2-deoxyglucitol
+GlcN1N-olhexol22h2122h_1*N_2*N2111121,2-diamino-1,2-dideoxyglucitol
+Grotriol14081121h2h212glycerol
+GroNtriol4742h2h_2*N2122-amino-2-deoxyglycerol (2-aminopropane-1,3-diol). Always D.
+Kdo-oloct*ol1313Axd1122h012112123-deoxy-D-glycero-D-galacto/talo-octonic acid (Kdo alditol, any of the two isomers)
+Lyx-olpenol77h112h21112lyxitol
+Man-olhexol153149h1122h211112mannitol
+Mur-olnon*ol77h2122h_2*N_3*OC^RCO/4=O/3C2111121032-amino-3-[(R)-1-carboxyethyl]-2-deoxy-D-glucitol (muramic alditol)
+Qui3N-olhexol44h2122m_3*N2111133-amino-3,6-dideoxyglucitol
+Qui4N-olhexol11h2122m_4*N2111134-amino-4,6-dideoxyglucitol
+QuiN-olhexol33h2122m_2*N2111132-amino-2,6-dideoxyglucitol
+QuiN4N-olhexol11h2122m_2*N_4*N2111132,4-diamino-2,4,6-trideoxyglucitol
+Rha-olhexol3939h1122m2111136-deoxy-D-mannitol (D-rhamnitol?), 1-deoxy-D-mannitol (L-rhamnitol?)
+Rha1N-olhexol55h1122m_1*N2111131-amino-1,6-deoxy-D-mannitol
+Rib-olpenol366322h222h21112ribitol
+Thre-oltetol3939h12h2112threitol
+Xyl-olpenol88h212h21112xylitol
+Xyl1N-olpenol22h212h_1*N211121-amino-1-deoxy-xylitol
Residue Size Type Abundance Structures WURCSProton count / Atom types Description
+DDHephep*sug109 alias: DD-heptose
+Hephepsug12665 alias: heptose
+HEPhep*sug3525QQQQQQQ superclass: heptose
+HEXhex*sug2410QQQQQQ superclass: hexose
+Hexhexsug2313 alias: hexose
+LDHephep*sug11 alias: LD-heptose
+Sug sug287271 alias: any monosaccharide
+SUG *sug7649 superclass: any monosaccharide
+TETtet*sug11QQQQ superclass: tetrose
Residue Size Type Abundance Structures WURCSProton count / Atom types Description
+16HOPhytnsu*alk63*1OCCC^XCCCC^XCCCC^XCCCC^XC/5C/9C/13C/17C/18O*1622122212221222123