| Enzyme / Gene |
Activity |
Object |
References |
Enzyme name: XYLT
UniProt ID: Q9LDH0.1
CAZy family: GT61
Gene name: XYLT / AT5G55500
Gene GenBank ID: 835643 | Synthesized dimer: bDXylp(1-2)bDManp
bDManp)
Donor (ID 34008): ?DXylp(1-P-P-5)xXnucU
Acceptor (ID 34089): Ac(1-2)bDGlcpN(1-2)aDManp(1-3)[aDManp(1-6)]bDManp(1-1)Oc
Status: evidence in vitro
Confirmation methods: in vitro(crude extract), in vitro (purified protein), mutation (in recombinant protein)
ID: 1718 Notes: XYLT is required for synthesis of bDXylp(1-2)[aDManp(1-3),aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN, bDXylp(1-2)[Ac(1-2)bDGlcpN(1-2)aDManp(1-3),aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN, bDXylp(1-2)[Ac(1-2)bDGlcpN(1-2)aDManp(1-3),Ac(1-2)bDGlcpN(1-2)aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN in planta.
| Organism (ID 9805): Arabidopsis thaliana
Full structure (ID 34090):
[aDManp(1-6),Ac(1-2)bDGlcpN(1-2)aDManp(1-3)]bDManp(1-1)Oc&highlight=2~2~bDXyl) | Yoo et al. 2015
DOI: 10.1074/jbc.M115.653162
Pagny et al. 2003
DOI: 10.1046/j.0960-7412.2002.01604.x
Bencur et al. 2005
DOI: 10.1042/BJ20042091
Kajiura et al. 2012
DOI: 10.1016/j.jbiosc.2011.09.011
Strasser et al. 2004
DOI: 10.1016/S0014-5793(04)00150-4
|
Synthesized dimer: bDXylp(1-2)bDManp
bDManp)
Donor (ID 34008): ?DXylp(1-P-P-5)xXnucU
Acceptor (ID 34091): Ac(1-2)bDGlcpN(1-2)aDManp(1-3)[Ac(1-2)bDGlcpN(1-2)aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2)]bDGlcpN1N(1-4)x?Asn
Status: direct evidence in vivo
Confirmation methods: in vitro(crude extract), in vitro (purified protein), mutation
ID: 1719 Notes: XYLT is required for synthesis of bDXylp(1-2)[aDManp(1-3),aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN, bDXylp(1-2)[Ac(1-2)bDGlcpN(1-2)aDManp(1-3),aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN, bDXylp(1-2)[Ac(1-2)bDGlcpN(1-2)aDManp(1-3),Ac(1-2)bDGlcpN(1-2)aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN in planta.
| Organism (ID 9805): Arabidopsis thaliana
Full structure (ID 34092):
[Ac(1-2)bDGlcpN(1-2)aDManp(1-6),Ac(1-2)bDGlcpN(1-2)aDManp(1-3)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2)]bDGlcpN1N(1-4)x?Asn&highlight=4~2~bDXyl) | Strasser et al. 2000
DOI: 10.1016/S0014-5793(00)01443-5
Strasser et al. 2004
DOI: 10.1016/S0014-5793(04)00150-4
Kajiura et al. 2012
DOI: 10.1016/j.jbiosc.2011.09.011
Bencur et al. 2005
DOI: 10.1042/BJ20042091
Pagny et al. 2003
DOI: 10.1046/j.0960-7412.2002.01604.x
Yoo et al. 2015
DOI: 10.1074/jbc.M115.653162
|
Synthesized dimer: bDXylp(1-2)bDManp
bDManp)
Donor (ID 34008): ?DXylp(1-P-P-5)xXnucU
Acceptor (ID 34093): Ac(1-2)bDGlcpN(1-2)aDManp(1-3)[aDManp(1-3)[aDManp(1-6)]aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2)]bDGlcpN1N(1-4)x?Asn
Status: direct evidence in vivo
Confirmation methods: in vitro(crude extract), in vitro (purified protein), mutation
ID: 1720 Notes: XYLT is required for synthesis of bDXylp(1-2)[aDManp(1-3),aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN, bDXylp(1-2)[Ac(1-2)bDGlcpN(1-2)aDManp(1-3),aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN, bDXylp(1-2)[Ac(1-2)bDGlcpN(1-2)aDManp(1-3),Ac(1-2)bDGlcpN(1-2)aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN in planta.
| Organism (ID 9805): Arabidopsis thaliana
Full structure (ID 34094):
[aDManp(1-3)[aDManp(1-6)]aDManp(1-6),Ac(1-2)bDGlcpN(1-2)aDManp(1-3)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2)]bDGlcpN1N(1-4)x?Asn&highlight=4~2~bDXyl) | Strasser et al. 2004
DOI: 10.1016/S0014-5793(04)00150-4
Kajiura et al. 2012
DOI: 10.1016/j.jbiosc.2011.09.011
Bencur et al. 2005
DOI: 10.1042/BJ20042091
Yoo et al. 2015
DOI: 10.1074/jbc.M115.653162
|
Synthesized dimer: bDXylp(1-2)bDManp
bDManp)
Donor (ID 34008): ?DXylp(1-P-P-5)xXnucU
Acceptor (ID 34095): Ac(1-2)bDGlcpN(1-2)aDManp(1-3)[Ac(1-2)bDGlcpN(1-2)aDManp(1-6)]bDManp(1-1)Oc
Status: evidence in vitro
Confirmation methods: in vitro(crude extract), in vitro (purified protein), mutation (in recombinant protein)
ID: 1721 Notes: XYLT is required for synthesis of bDXylp(1-2)[aDManp(1-3),aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN, bDXylp(1-2)[Ac(1-2)bDGlcpN(1-2)aDManp(1-3),aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN, bDXylp(1-2)[Ac(1-2)bDGlcpN(1-2)aDManp(1-3),Ac(1-2)bDGlcpN(1-2)aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN in planta.
| Organism (ID 9805): Arabidopsis thaliana
Full structure (ID 34096):
[Ac(1-2)bDGlcpN(1-2)aDManp(1-6),Ac(1-2)bDGlcpN(1-2)aDManp(1-3)]bDManp(1-1)Oc&highlight=2~2~bDXyl) |
Synthesized dimer: bDXylp(1-2)bDManp
bDManp)
Donor (ID 34008): ?DXylp(1-P-P-5)xXnucU
Acceptor (ID 34097): Ac(1-2)bDGlcpN(1-2)aDManp(1-3)[aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2)]bDGlcpN1N(1-4)x?Asn
Status: indirect evidence in vivo
Confirmation methods: mutation
ID: 1722 Notes: Suggested activity in planta. XYLT is required for synthesis of bDXylp(1-2)[aDManp(1-3),aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN, bDXylp(1-2)[Ac(1-2)bDGlcpN(1-2)aDManp(1-3),aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN, bDXylp(1-2)[Ac(1-2)bDGlcpN(1-2)aDManp(1-3),Ac(1-2)bDGlcpN(1-2)aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN in planta.
| Organism (ID 9805): Arabidopsis thaliana
Full structure (ID 34098):
[aDManp(1-6),Ac(1-2)bDGlcpN(1-2)aDManp(1-3)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2)]bDGlcpN1N(1-4)x?Asn&highlight=4~2~bDXyl) | Yoo et al. 2015
DOI: 10.1074/jbc.M115.653162
Bencur et al. 2005
DOI: 10.1042/BJ20042091
Kajiura et al. 2012
DOI: 10.1016/j.jbiosc.2011.09.011
Strasser et al. 2004
DOI: 10.1016/S0014-5793(04)00150-4
|
#GTR ID Enzyme name Enzyme group Enzyme Genbank ID Derived ID mark Enzyme Uniprot ID Derived ID mark CAZY family Gene name Gene Genbank ID Derived ID mark Gene cluster Full structure CSDB structure ID Side product CSDB structure ID Full structure Full structure is fragment (0|1) Synthesized bond Synthesized bond location (from root ~ subst position) Donor structure ID Substrate structure Confirmation status Methods used Notes Molecule role Molecule is a model of role (0|1) Molecule is a precursor of role (0|1) Main CSDB record ID Additional CSDB record IDs CSDB organism IDs Organism names Organs and tissues References (;-separated)
1718 XYLT Q9LDH0.1 GT61 XYLT / AT5G55500 835643 34090 bDXylp(1-2)[aDManp(1-6),Ac(1-2)bDGlcpN(1-2)aDManp(1-3)]bDManp(1-1)Oc 0 bDXylp(1-2)bDManp 2~2 ?DXylp(1-P-P-5)xXnucU Ac(1-2)bDGlcpN(1-2)aDManp(1-3)[aDManp(1-6)]bDManp(1-1)Oc in vitro in vitro(crude extract), in vitro (purified protein), mutation (in recombinant protein) XYLT is required for synthesis of bDXylp(1-2)[aDManp(1-3),aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN, bDXylp(1-2)[Ac(1-2)bDGlcpN(1-2)aDManp(1-3),aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN, bDXylp(1-2)[Ac(1-2)bDGlcpN(1-2)aDManp(1-3),Ac(1-2)bDGlcpN(1-2)aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN in planta. 0 0 9805 Arabidopsis thaliana Yoo et al. 2015 (doi: 10.1074/jbc.M115.653162); Pagny et al. 2003 (doi: 10.1046/j.0960-7412.2002.01604.x); Bencur et al. 2005 (doi: 10.1042/BJ20042091); Kajiura et al. 2012 (doi: 10.1016/j.jbiosc.2011.09.011); Strasser et al. 2004 (doi: 10.1016/S0014-5793(04)00150-4)
1719 XYLT Q9LDH0.1 GT61 XYLT / AT5G55500 835643 34092 bDXylp(1-2)[Ac(1-2)bDGlcpN(1-2)aDManp(1-6),Ac(1-2)bDGlcpN(1-2)aDManp(1-3)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2)]bDGlcpN1N(1-4)x?Asn 0 bDXylp(1-2)bDManp 4~2 ?DXylp(1-P-P-5)xXnucU Ac(1-2)bDGlcpN(1-2)aDManp(1-3)[Ac(1-2)bDGlcpN(1-2)aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2)]bDGlcpN1N(1-4)x?Asn in vivo in vitro(crude extract), in vitro (purified protein), mutation XYLT is required for synthesis of bDXylp(1-2)[aDManp(1-3),aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN, bDXylp(1-2)[Ac(1-2)bDGlcpN(1-2)aDManp(1-3),aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN, bDXylp(1-2)[Ac(1-2)bDGlcpN(1-2)aDManp(1-3),Ac(1-2)bDGlcpN(1-2)aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN in planta. 0 0 9805 Arabidopsis thaliana Strasser et al. 2000 (doi: 10.1016/S0014-5793(00)01443-5); Strasser et al. 2004 (doi: 10.1016/S0014-5793(04)00150-4); Kajiura et al. 2012 (doi: 10.1016/j.jbiosc.2011.09.011); Bencur et al. 2005 (doi: 10.1042/BJ20042091); Pagny et al. 2003 (doi: 10.1046/j.0960-7412.2002.01604.x); Yoo et al. 2015 (doi: 10.1074/jbc.M115.653162)
1720 XYLT Q9LDH0.1 GT61 XYLT / AT5G55500 835643 34094 bDXylp(1-2)[aDManp(1-3)[aDManp(1-6)]aDManp(1-6),Ac(1-2)bDGlcpN(1-2)aDManp(1-3)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2)]bDGlcpN1N(1-4)x?Asn 0 bDXylp(1-2)bDManp 4~2 ?DXylp(1-P-P-5)xXnucU Ac(1-2)bDGlcpN(1-2)aDManp(1-3)[aDManp(1-3)[aDManp(1-6)]aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2)]bDGlcpN1N(1-4)x?Asn in vivo in vitro(crude extract), in vitro (purified protein), mutation XYLT is required for synthesis of bDXylp(1-2)[aDManp(1-3),aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN, bDXylp(1-2)[Ac(1-2)bDGlcpN(1-2)aDManp(1-3),aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN, bDXylp(1-2)[Ac(1-2)bDGlcpN(1-2)aDManp(1-3),Ac(1-2)bDGlcpN(1-2)aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN in planta. 0 0 9805 Arabidopsis thaliana Strasser et al. 2004 (doi: 10.1016/S0014-5793(04)00150-4); Kajiura et al. 2012 (doi: 10.1016/j.jbiosc.2011.09.011); Bencur et al. 2005 (doi: 10.1042/BJ20042091); Yoo et al. 2015 (doi: 10.1074/jbc.M115.653162)
1721 XYLT Q9LDH0.1 GT61 XYLT / AT5G55500 835643 34096 bDXylp(1-2)[Ac(1-2)bDGlcpN(1-2)aDManp(1-6),Ac(1-2)bDGlcpN(1-2)aDManp(1-3)]bDManp(1-1)Oc 0 bDXylp(1-2)bDManp 2~2 ?DXylp(1-P-P-5)xXnucU Ac(1-2)bDGlcpN(1-2)aDManp(1-3)[Ac(1-2)bDGlcpN(1-2)aDManp(1-6)]bDManp(1-1)Oc in vitro in vitro(crude extract), in vitro (purified protein), mutation (in recombinant protein) XYLT is required for synthesis of bDXylp(1-2)[aDManp(1-3),aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN, bDXylp(1-2)[Ac(1-2)bDGlcpN(1-2)aDManp(1-3),aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN, bDXylp(1-2)[Ac(1-2)bDGlcpN(1-2)aDManp(1-3),Ac(1-2)bDGlcpN(1-2)aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN in planta. 0 0 9805 Arabidopsis thaliana Strasser et al. 2004 (doi: 10.1016/S0014-5793(04)00150-4); Kajiura et al. 2012 (doi: 10.1016/j.jbiosc.2011.09.011); Bencur et al. 2005 (doi: 10.1042/BJ20042091); Yoo et al. 2015 (doi: 10.1074/jbc.M115.653162)
1722 XYLT Q9LDH0.1 GT61 XYLT / AT5G55500 835643 34098 bDXylp(1-2)[aDManp(1-6),Ac(1-2)bDGlcpN(1-2)aDManp(1-3)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2)]bDGlcpN1N(1-4)x?Asn 0 bDXylp(1-2)bDManp 4~2 ?DXylp(1-P-P-5)xXnucU Ac(1-2)bDGlcpN(1-2)aDManp(1-3)[aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2)]bDGlcpN1N(1-4)x?Asn indirect mutation Suggested activity in planta. XYLT is required for synthesis of bDXylp(1-2)[aDManp(1-3),aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN, bDXylp(1-2)[Ac(1-2)bDGlcpN(1-2)aDManp(1-3),aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN, bDXylp(1-2)[Ac(1-2)bDGlcpN(1-2)aDManp(1-3),Ac(1-2)bDGlcpN(1-2)aDManp(1-6)]bDManp(1-4)[Ac(1-2)]bDGlcpN(1-4)[Ac(1-2),aLFucp(1-3)]bDGlcpN in planta. 0 0 9805 Arabidopsis thaliana Yoo et al. 2015 (doi: 10.1074/jbc.M115.653162); Bencur et al. 2005 (doi: 10.1042/BJ20042091); Kajiura et al. 2012 (doi: 10.1016/j.jbiosc.2011.09.011); Strasser et al. 2004 (doi: 10.1016/S0014-5793(04)00150-4)