CSDB glycosyltransferase search

5 glycosyltransferase activities have been found.
Please note that CSDB GT database covers only a few species: Arabidopsis thaliana, Escherichia coli, Saccharomyces cerevisiae, Acinetobacter baumannii.

Enzyme / Gene	Activity	Object	References
Enzyme name: WfeM UniProt ID: B5L3T2 CAZy family: GT2 Gene name: wfeM Gene cluster ID: AB812050	Synthesized dimer: bDGlcpN(1-3)aDGalpN Status: predicted in silico Confirmation methods: in silico ID: 2725	Organism (ID 4479): Escherichia coli O112ac Full structure (ID 7912): CSDB ID(s): 1869, 9153, 23063 Molecule role: O-antigen	Iguchi et al. 2015 DOI: 10.1093/dnares/dsu043
Enzyme name: WfeF UniProt ID: B5L403 CAZy family: GT2 Gene name: wfeF Gene cluster ID: EU296413	Synthesized dimer: bDGlcpN(1-3)aDGalpN Status: predicted in silico Confirmation methods: in silico ID: 2778	Organism (ID 4473): Escherichia coli O112ab Full structure (ID 7909): CSDB ID(s): 26942, 23057, 3646, 3390, 1851, 705 Molecule role: O-antigen	Liu et al. 2008 DOI: 10.1111/j.1574-6976.2008.00114.x
Enzyme name: Orf9 UniProt ID: A0A0A6ZEP3 Gene name: wclU, WQ74_04130 Gene cluster ID: AB812061	Synthesized dimer: bDGlcpN(1-3)aDGalpN Status: predicted in silico Confirmation methods: in silico ID: 2838	Organism (ID 1508): Escherichia coli O142 Full structure (ID 2680): CSDB ID(s): 30056, 22382, 20685, 3113, 1884 Molecule role: O-antigen	Iguchi et al. 2015 DOI: 10.1093/dnares/dsu043
Enzyme name: WzyK8 Enzyme GenBank ID: AQQ74334.1 Gene name: wzy Gene cluster ID: KX712116.1	Synthesized dimer: bDGlcpN(1-3)aDGalpN Donor (ID 35124): Ac(1-5)[<<75%lR3HOBut(1-7)\|25%Ac(1-7)>>]aXLegp(2-6)[Ac(1-2)]aDGalpN(1-3)[Ac(1-2)]aLFucpN(1-3)[Ac(1-2)]bDGlcpN(1-P-P-1)Subst // Subst = undecaprenol Acceptor (ID 35125): -3)[Ac(1-5)[<<75%lR3HOBut(1-7)\|25%Ac(1-7)>>]aXLegp(2-6),Ac(1-2)]aDGalpN(1-3)[Ac(1-2)]aLFucpN(1-3)[Ac(1-2)]bDGlcpN(1- Status: predicted in silico Confirmation methods: Sequencing (gene, protein) ID: 3717 Notes: gene cluster name: KL8	Organism (ID 17292): Acinetobacter baumannii BAL 097 Full structure (ID 16529): CSDB ID(s): 22787 Molecule role: CPS	Arbatsky et al. 2019b DOI: 10.1016/j.carres.2019.107745
Enzyme name: WzyK89 Enzyme GenBank ID: AHB32861.1 Gene name: wzy Gene cluster ID: KC526919.1	Synthesized dimer: bDGlcpN(1-3)aDGalpN Donor (ID 35205): bDGlcp(1-2)[Ac(1-3)]bDFucp3N(1-6)aDGlcp(1-4)[Ac(1-2)]aDGalpN(1-3)[Ac(1-2)]bDGlcpN(1-P-P-1)Subst // Subst = undecaprenol Acceptor (ID 35206): -3)[bDGlcp(1-2)[Ac(1-3)]bDFucp3N(1-6)aDGlcp(1-4),Ac(1-2)]aDGalpN(1-3)[Ac(1-2)]bDGlcpN(1- Status: predicted in silico Confirmation methods: Sequencing (gene, protein) ID: 3828 Notes: gene cluster name: KL89	Organism (ID 17311): Acinetobacter baumannii LUH5552 Full structure (ID 15839): CSDB ID(s): 8429, 9738 Molecule role: CPS	Arbatsky et al. 2022a DOI: 10.1016/j.ijbiomac.2022.07.085

#GTR ID	Enzyme name	Enzyme group	Enzyme Genbank ID	Derived ID mark	Enzyme Uniprot ID	Derived ID mark	CAZY family	Gene name	Gene Genbank ID	Derived ID mark	Gene cluster	Full structure CSDB structure ID	Side product CSDB structure ID	Full structure	Full structure is fragment (0|1)	Synthesized bond	Synthesized bond location (from root ~ subst position)	Donor structure ID	Substrate structure	Confirmation status	Methods used	Notes	Molecule role	Molecule is a model of role (0|1)	Molecule is a precursor of role (0|1)	Main CSDB record ID	Additional CSDB record IDs	CSDB organism IDs	Organism names	Organs and tissues	References (;-separated)
2725	WfeM				B5L3T2		GT2	wfeM			AB812050	7912		-4)[xSPyr(2-6:2-4)[70%Ac(1-3),Ac(1-2)]bDGlcpN(1-3),Ac(1-2)]aDGalpN(1-4)aDGlcp(1-4)bDGalp(1-3)[Ac(1-2)]bDGalpN(1-	0	bDGlcpN(1-3)aDGalpN	5~3			in silico	in silico		O-antigen	0	0		1869,9153,23063	4479	Escherichia coli O112ac		Iguchi et al. 2015 (doi: 10.1093/dnares/dsu043)	
2778	WfeF				B5L403		GT2	wfeF			EU296413	7909		-4)[Ac(1-2)bDGlcpN(1-3),Ac(1-2)]aDGalpN(1-4)aDGlcp(1-4)aLIdopA(1-3)[Ac(1-2)]bDGalpN(1-	0	bDGlcpN(1-3)aDGalpN	5~3			in silico	in silico		O-antigen	0	0		26942,23057,3646,3390,1851,705	4473	Escherichia coli O112ab		Liu et al. 2008 (doi: 10.1111/j.1574-6976.2008.00114.x)	
2838	Orf9				A0A0A6ZEP3			wclU, WQ74_04130			AB812061	2680		-2)aLRhap(1-6)[Ac(1-2)]aDGalpN(1-4)[Ac(1-2)bDGlcpN(1-3),Ac(1-2)]aDGalpN(1-3)[Ac(1-2)]aDGalpN(1-	0	bDGlcpN(1-3)aDGalpN	3~3			in silico	in silico		O-antigen	0	0		30056,22382,20685,3113,1884	1508	Escherichia coli O142		Iguchi et al. 2015 (doi: 10.1093/dnares/dsu043)	
3717	WzyK8		AQQ74334.1					wzy			KX712116.1	16529		-3)[Ac(1-5)[<<71%lS3HOBut(1-7)|29%Ac(1-7)>>]aXLegp(2-6),Ac(1-2)]aDGalpN(1-3)[Ac(1-2)]aLFucpN(1-3)[Ac(1-2)]bDGlcpN(1-	0	bDGlcpN(1-3)aDGalpN	1~3	Ac(1-5)[<<75%lR3HOBut(1-7)|25%Ac(1-7)>>]aXLegp(2-6)[Ac(1-2)]aDGalpN(1-3)[Ac(1-2)]aLFucpN(1-3)[Ac(1-2)]bDGlcpN(1-P-P-1)Subst // Subst = undecaprenol	-3)[Ac(1-5)[<<75%lR3HOBut(1-7)|25%Ac(1-7)>>]aXLegp(2-6),Ac(1-2)]aDGalpN(1-3)[Ac(1-2)]aLFucpN(1-3)[Ac(1-2)]bDGlcpN(1-	in silico	Sequencing (gene, protein)	gene cluster name: KL8	CPS	0	0		22787	17292	Acinetobacter baumannii BAL 097		Arbatsky et al. 2019b (doi: 10.1016/j.carres.2019.107745)	
3828	WzyK89		AHB32861.1					wzy			KC526919.1	15839		-3)[bDGlcp(1-2)[Ac(1-3)]bDFucp3N(1-6)aDGlcp(1-4),Ac(1-2)]aDGalpN(1-3)[Ac(1-2)]bDGlcpN(1-	0	bDGlcpN(1-3)aDGalpN	1~3	bDGlcp(1-2)[Ac(1-3)]bDFucp3N(1-6)aDGlcp(1-4)[Ac(1-2)]aDGalpN(1-3)[Ac(1-2)]bDGlcpN(1-P-P-1)Subst // Subst = undecaprenol	-3)[bDGlcp(1-2)[Ac(1-3)]bDFucp3N(1-6)aDGlcp(1-4),Ac(1-2)]aDGalpN(1-3)[Ac(1-2)]bDGlcpN(1-	in silico	Sequencing (gene, protein)	gene cluster name: KL89	CPS	0	0		8429,9738	17311	Acinetobacter baumannii LUH5552		Arbatsky et al. 2022a (doi: 10.1016/j.ijbiomac.2022.07.085)