CSDB glycosyltransferase search

6 glycosyltransferase activities have been found.
Please note that CSDB GT database covers only a few species: Arabidopsis thaliana, Escherichia coli, Saccharomyces cerevisiae, Acinetobacter baumannii.

Enzyme / Gene	Activity	Object	References
Enzyme name: WafE Enzyme GenBank ID: AHB32539.1 CAZy family: 4 Gene name: wafE	Synthesized dimer: aDGalpN(1-3)bDGalpN Donor (ID 34385): Ac(1-2)?DGalpN(1-P-P-5)xXnucU Acceptor (ID 35233): Ac(1-2)bDGalpN(1-3)aDGalp(1-6)bDGalp(1-3)[Ac(1-2)]bDGalpN Status: predicted in silico Confirmation methods: Sequencing (gene, protein) ID: 609 Notes: gene cluster name: PSgc2	Organism (ID 8732): Acinetobacter nosocomialis LUH3483 Full structure (ID 729): CSDB ID(s): 484, 5740, 6757, 27743, 29552 Molecule role: CPS	Hu et al. 2013 DOI: 10.1371/journal.pone.0070329
Enzyme name: WbnH Group: WbwH UniProt ID: P0DMP6* CAZy family: GT4 Gene name: wbnH / wbwH / wcmA Gene cluster ID: AY220982	Synthesized dimer: aDGalpN(1-3)bDGalpN Status: predicted in silico Confirmation methods: in silico ID: 2088	Organism (ID 2515): Escherichia coli O86:H2 Full structure (ID 4255): CSDB ID(s): 20043, 10548, 10035, 1592, 20120, 20508, 20667, 25273, 30366, 108706, 115586, 1439 Molecule role: O-antigen	Yi et al. 2006a DOI: 10.1016/j.bbrc.2006.03.181 Feng et al. 2005a DOI: 10.1016/j.vetmic.2004.12.021
Enzyme name: Orf6 Group: WbwH UniProt ID: A0A0A8J799 Gene name: ACU90_05815 Gene cluster ID: AB812031	Synthesized dimer: aDGalpN(1-3)bDGalpN Status: predicted in silico Confirmation methods: in silico ID: 2822	Organism (ID 6561): Escherichia coli O76 Full structure (ID 11391): CSDB ID(s): 29313, 25958, 1582 Molecule role: O-antigen	Perepelov et al. 2013b DOI: 10.1016/j.carres.2013.04.027
Enzyme name: WbiN Group: WbwH UniProt ID: A0A0A8J8F1 Gene name: AKG99_13150 Gene cluster ID: AB812039	Synthesized dimer: aDGalpN(1-3)bDGalpN Status: predicted in silico Confirmation methods: in silico ID: 2829	Organism (ID 3854): Escherichia coli O90 Full structure (ID 6551): CSDB ID(s): 1596, 118176, 218176 Molecule role: O-antigen	Iguchi et al. 2015 DOI: 10.1093/dnares/dsu043
Enzyme name: WeiD Group: WbwH UniProt ID: E2DZF0 CAZy family: GT4 Gene name: weiD Gene cluster ID: GU299794	Synthesized dimer: aDGalpN(1-3)bDGalpN Status: predicted in silico Confirmation methods: in silico ID: 2839	Organism (ID 4353): Escherichia coli O166 Full structure (ID 7662): CSDB ID(s): 30394, 25750, 1908 Molecule role: O-antigen	Liu et al. 2010c DOI: 10.1099/mic.0.037325-0
Enzyme name: Gtr50K30 Enzyme GenBank ID: ENV24274.1 Gene name: gtr50 Gene cluster ID: APPL01000041.1	Synthesized dimer: aDGalpN(1-3)bDGalpN Donor (ID 34385): Ac(1-2)?DGalpN(1-P-P-5)xXnucU Acceptor (ID 34955): Ac(1-2)bDGalpN(1-P-P-1)Subst // Subst = undecaprenol Status: predicted in silico Confirmation methods: Sequencing (gene, protein) ID: 3565 Notes: retaining GT, gene cluster name: KL30	Organism (ID 6996): Acinetobacter baumannii NIPH 190 Full structure (ID 12028): CSDB ID(s): 6736, 11795, 30676, 30948 Molecule role: CPS	Shashkov et al. 2015a DOI: 10.1016/j.carres.2015.09.004

Enzyme name: WafE
Enzyme GenBank ID: AHB32539.1
CAZy family: 4

Gene name: wafE

Synthesized dimer: aDGalpN(1-3)bDGalpN

Donor (ID 34385): Ac(1-2)?DGalpN(1-P-P-5)xXnucU

Acceptor (ID 35233): Ac(1-2)bDGalpN(1-3)aDGalp(1-6)bDGalp(1-3)[Ac(1-2)]bDGalpN

Status: predicted in silico
Confirmation methods: Sequencing (gene, protein)

ID: 609

Notes: gene cluster name: PSgc2

Organism (ID 8732): Acinetobacter nosocomialis LUH3483

Full structure (ID 729):

CSDB ID(s): 484, 5740, 6757, 27743, 29552

Molecule role: CPS

Hu et al. 2013
DOI: 10.1371/journal.pone.0070329

Enzyme name: WbnH
Group: WbwH
UniProt ID: P0DMP6*

CAZy family: GT4

Gene name: wbnH / wbwH / wcmA
Gene cluster ID: AY220982

Synthesized dimer: aDGalpN(1-3)bDGalpN

Status: predicted in silico
Confirmation methods: in silico

ID: 2088

Organism (ID 2515): Escherichia coli O86:H2

Full structure (ID 4255):

CSDB ID(s): 20043, 10548, 10035, 1592, 20120, 20508, 20667, 25273, 30366, 108706, 115586, 1439

Molecule role: O-antigen

Yi et al. 2006a
DOI: 10.1016/j.bbrc.2006.03.181

Feng et al. 2005a
DOI: 10.1016/j.vetmic.2004.12.021

Enzyme name: Orf6
Group: WbwH
UniProt ID: A0A0A8J799

Gene name: ACU90_05815
Gene cluster ID: AB812031

Synthesized dimer: aDGalpN(1-3)bDGalpN

Status: predicted in silico
Confirmation methods: in silico

ID: 2822

Organism (ID 6561): Escherichia coli O76

Full structure (ID 11391):

CSDB ID(s): 29313, 25958, 1582

Molecule role: O-antigen

Perepelov et al. 2013b
DOI: 10.1016/j.carres.2013.04.027

Enzyme name: WbiN
Group: WbwH
UniProt ID: A0A0A8J8F1

Gene name: AKG99_13150
Gene cluster ID: AB812039

Synthesized dimer: aDGalpN(1-3)bDGalpN

Status: predicted in silico
Confirmation methods: in silico

ID: 2829

Organism (ID 3854): Escherichia coli O90

Full structure (ID 6551):

CSDB ID(s): 1596, 118176, 218176

Molecule role: O-antigen

Iguchi et al. 2015
DOI: 10.1093/dnares/dsu043

Enzyme name: WeiD
Group: WbwH
UniProt ID: E2DZF0

CAZy family: GT4

Gene name: weiD
Gene cluster ID: GU299794

Synthesized dimer: aDGalpN(1-3)bDGalpN

Status: predicted in silico
Confirmation methods: in silico

ID: 2839

Organism (ID 4353): Escherichia coli O166

Full structure (ID 7662):

CSDB ID(s): 30394, 25750, 1908

Molecule role: O-antigen

Liu et al. 2010c
DOI: 10.1099/mic.0.037325-0

Enzyme name: Gtr50K30
Enzyme GenBank ID: ENV24274.1

Gene name: gtr50
Gene cluster ID: APPL01000041.1

Synthesized dimer: aDGalpN(1-3)bDGalpN

Donor (ID 34385): Ac(1-2)?DGalpN(1-P-P-5)xXnucU

Acceptor (ID 34955): Ac(1-2)bDGalpN(1-P-P-1)Subst // Subst = undecaprenol

Status: predicted in silico
Confirmation methods: Sequencing (gene, protein)

ID: 3565

Notes: retaining GT, gene cluster name: KL30

Organism (ID 6996): Acinetobacter baumannii NIPH 190

Full structure (ID 12028):

CSDB ID(s): 6736, 11795, 30676, 30948

Molecule role: CPS

Shashkov et al. 2015a
DOI: 10.1016/j.carres.2015.09.004

#GTR ID	Enzyme name	Enzyme group	Enzyme Genbank ID	Derived ID mark	Enzyme Uniprot ID	Derived ID mark	CAZY family	Gene name	Gene Genbank ID	Derived ID mark	Gene cluster	Full structure CSDB structure ID	Side product CSDB structure ID	Full structure	Full structure is fragment (0|1)	Synthesized bond	Synthesized bond location (from root ~ subst position)	Donor structure ID	Substrate structure	Confirmation status	Methods used	Notes	Molecule role	Molecule is a model of role (0|1)	Molecule is a precursor of role (0|1)	Main CSDB record ID	Additional CSDB record IDs	CSDB organism IDs	Organism names	Organs and tissues	References (;-separated)
609	WafE		AHB32539.1				4	wafE				729		-3)[Ac(1-2)]bDGalpN(1-4)[lR3HOBut(1-3)bDFucp3N(1-3)[Ac(1-2)]aDGalpN(1-3)[Ac(1-2)]bDGalpN(1-3)]aDGalp(1-6)bDGalp(1-	0	aDGalpN(1-3)bDGalpN	?~3	Ac(1-2)?DGalpN(1-P-P-5)xXnucU	Ac(1-2)bDGalpN(1-3)aDGalp(1-6)bDGalp(1-3)[Ac(1-2)]bDGalpN	in silico	Sequencing (gene, protein)	gene cluster name: PSgc2	CPS	0	0		484,5740,6757,27743,29552	8732	Acinetobacter nosocomialis LUH3483		Hu et al. 2013 (doi: 10.1371/journal.pone.0070329)	
2088	WbnH	WbwH			P0DMP6	*	GT4	wbnH / wbwH / wcmA			AY220982	4255		-4)aLFucp(1-2)[aDGalp(1-3)]bDGalp(1-3)[Ac(1-2)]aDGalpN(1-3)[Ac(1-2)]bDGalpN(1-	0	aDGalpN(1-3)bDGalpN	2~3			in silico	in silico		O-antigen	0	0		20043,10548,10035,1592,20120,20508,20667,25273,30366,108706,115586,1439	2515	Escherichia coli O86:H2		Yi et al. 2006a (doi: 10.1016/j.bbrc.2006.03.181); Feng et al. 2005a (doi: 10.1016/j.vetmic.2004.12.021)	
2822	Orf6	WbwH			A0A0A8J799			ACU90_05815			AB812031	11391		-4)bDGlcpA(1-4)[70%Ac(1-3),Ac(1-2)]bDGalpN(1-4)[Ac(1-2)]aDGalpN(1-3)[Ac(1-2)]bDGalpN(1-	0	aDGalpN(1-3)bDGalpN	2~3			in silico	in silico		O-antigen	0	0	29313	25958,1582	6561	Escherichia coli O76		Perepelov et al. 2013b (doi: 10.1016/j.carres.2013.04.027)	
2829	WbiN	WbwH			A0A0A8J8F1			AKG99_13150			AB812039	6551		-4)[Ac(1-3)]aLFucp(1-2)bDGalp(1-3)[Ac(1-2)]aDGalpN(1-3)[Ac(1-2)]bDGalpN(1-	0	aDGalpN(1-3)bDGalpN	2~3			in silico	in silico		O-antigen	0	0		1596,118176,218176	3854	Escherichia coli O90		Iguchi et al. 2015 (doi: 10.1093/dnares/dsu043)	
2839	WeiD	WbwH			E2DZF0		GT4	weiD			GU299794	7662		-3)aDGalp(1-6)aDGalp(1-4)[bDGlcp(1-3),Ac(1-2)]aDGalpN(1-3)[Ac(1-2)]bDGalpN(1-	0	aDGalpN(1-3)bDGalpN	2~3			in silico	in silico		O-antigen	0	0		30394,25750,1908	4353	Escherichia coli O166		Liu et al. 2010c (doi: 10.1099/mic.0.037325-0)	
3565	Gtr50K30		ENV24274.1					gtr50			APPL01000041.1	12028		-2)aDGalp(1-6)aDGlcp(1-4)[bDGlcp(1-3),Ac(1-2)]aDGalpN(1-3)[Ac(1-2)]bDGalpN(1-	0	aDGalpN(1-3)bDGalpN	2~3	Ac(1-2)?DGalpN(1-P-P-5)xXnucU	Ac(1-2)bDGalpN(1-P-P-1)Subst // Subst = undecaprenol	in silico	Sequencing (gene, protein)	retaining GT, gene cluster name: KL30	CPS	0	0		6736,11795,30676,30948	6996	Acinetobacter baumannii NIPH 190		Shashkov et al. 2015a (doi: 10.1016/j.carres.2015.09.004)