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1.
(
Organism ID:
2001)
Streptococcus
pneumoniae
2
(
Ancestor NCBI TaxID 1313
,
species name lookup
)
Taxonomic group:
bacteria
Phylum:
Firmicutes
The following compound(s) are assigned to this organism:
Compound ID:
1848
a-D-GlcpA-(1-6)-a-D-Glcp-(1-2)-+ | -4)-b-D-Glcp-(1-3)-a-L-Rhap-(1-3)-a-L-Rhap-(1-3)-b-L-Rhap-(1-
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Structure type:
polymer chemical repeating unit
Trivial name:
capsule type 2
Compound class:
EPS, CPS, polysaccharide, rhamnoglucan
Reference(s) to other database(s):
GTC:G67978MJ, GlycomeDB:
25030
Analytical Biochemistry
2000, "Development and validation of an NMR-based identity assay for bacterial polysaccharides"
CSDB ID 6395
(all data & tools)
Journal of Pharmaceutical and Biomedical Analysis
2005, "NMR assays for carbohydrate-based vaccines"
CSDB ID 10368
(all data & tools)
Journal of Bacteriology
2005, "CpsE from type 2 Streptococcus pneumoniae catalyzes the reversible addition of glucose-1-phosphate to a polyprenyl phosphate acceptor, initiating type 2 capsule repeat unit formation"
CSDB ID 10522
(all data & tools)
Infection and Immunity
2009, "Identification of a simple chemical structure associated with protective human antibodies against multiple pneumococcal serogroups"
CSDB ID 23803
(all data & tools)
Clinical Microbiology Reviews
2015, "Pneumococcal Capsules and Their Types: Past, Present, and Future"
CSDB ID 31004
(all data & tools)
Journal of the American Chemical Society
2017, "A Streptococcus pneumoniae Type 2 Oligosaccharide Glycoconjugate Elicits Opsonic Antibodies and Is Protective in an Animal Model of Invasive Pneumococcal Disease"
CSDB ID 12024
(all data & tools)
Carbohydrate Polymers
2019, "Removal of cell wall polysaccharide in pneumococcal capsular polysaccharides by selective degradation via deamination"
CSDB ID 1944
(all data & tools)
Journal of Fungi
2015, "Masking the pathogen: evolutionary strategies of fungi and their bacterial counterparts"
CSDB ID 48434
(all data & tools)
Annual Review of Microbiology
2011, "Capsules of Streptococcus pneumoniae and other bacteria: paradigms for polysaccharide biosynthesis and regulation"
CSDB ID 47833
(all data & tools)
BOOK: Comprehensive Glycoscience: From Chemistry to Systems Biology. Reference Module in Chemistry, Molecular Sciences and Chemical Engineering; Eds.: Barchi J, Kamerling H; Elsevier
2021, "Bacterial exopolysaccharides"
CSDB ID 7028
(all data & tools)
Annual Review of Microbiology
2020, "Assembly of Bacterial Capsular Polysaccharides and Exopolysaccharides"
CSDB ID 7649
(all data & tools)
Russian Journal of Bioorganic Chemistry
2021, "Synthetic Analogs of Streptococcus pneumoniae Capsular Polysaccharides and Immunogenic Activities of Glycoconjugates"
CSDB ID 7970
(all data & tools)
Carbohydrate Research
2021, "Bacterial surface capsular polysaccharides from Streptococcus pneumoniae: A systematic review on structures, syntheses, and glycoconjugate vaccines"
CSDB ID 5806
(all data & tools)
Carbohydrate Polymers
2022, "Purification of capsular polysaccharides isolated from S. pneumoniae serotype 2 by hydrogen peroxide and endonuclease"
CSDB ID 8459
(all data & tools)
Carbohydrate Research
2022, "Partial depolymerization of capsular polysaccharides isolated from Streptococcus pneumoniae serotype 2 by various methods"
CSDB ID 8460
(all data & tools)
Carbohydrate Polymers
2023, "Effect of trifluoroacetic acid on the antigenicity of capsular polysaccharides obtained from various Streptococcus pneumoniae serotypes"
CSDB ID 22231
(all data & tools)
Biotechnology Advances
2023, "Cell wall polysaccharides of streptococci: A genetic and structural perspective"
CSDB ID 20298
(all data & tools)
Compound ID:
4279
a-D-GlcpA-(1-6)-a-D-Glcp-(1-2)-a-L-Rhap-(1-3)-a-L-Rhap-(1-3)-b-L-Rhap-(1-4)-a-D-Glcp-(1---P---P----/polyprenyl/
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Structure type:
oligomer
Aglycon:
polyprenyl
Reference(s) to other database(s):
GlycomeDB:
27790
Journal of Bacteriology
2005, "CpsE from type 2 Streptococcus pneumoniae catalyzes the reversible addition of glucose-1-phosphate to a polyprenyl phosphate acceptor, initiating type 2 capsule repeat unit formation"
CSDB ID 10708
(all data & tools)
Compound ID:
12152
a-D-GlcpA-(1-6)-a-D-Glcp-(1-2)-+ | -4)-b-D-Glcp-(1-3)-a-L-Rhap-(1-3)-a-L-Rhap-(1-3)-a-L-Rhap-(1-
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Structure type:
polymer chemical repeating unit
Compound class:
CPS
Reference(s) to other database(s):
GTC:G25670OI
Methods in Molecular Biology
2015, "Characterization of Carbohydrate Vaccines by NMR Spectroscopy"
CSDB ID 11094
(all data & tools)
Compound ID:
12802
b-L-Rhap-(1-4)-b-D-Glcp-(1-3)-+ | a-D-GlcpA-(1-6)-a-D-Glcp-(1-2)-a-L-Rhap-(1-3)-a-L-Rhap-(1--/(1->1) 5-aminopentyl/
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Structure type:
oligomer ; 1064.4067 [M+Na]+
C41H71O29N
Aglycon:
(1->1) 5-aminopentyl
Compound class:
CPS
Reference(s) to other database(s):
GTC:G28337FJ
Journal of the American Chemical Society
2017, "A Streptococcus pneumoniae Type 2 Oligosaccharide Glycoconjugate Elicits Opsonic Antibodies and Is Protective in an Animal Model of Invasive Pneumococcal Disease"
CSDB ID 12413
(all data & tools)
Compound ID:
14768
b-L-Rhap-(1-4)-b-D-Glcp-(1-3)-+ | a-D-GlcpA-(1-6)-a-D-Glcp-(1-2)-a-L-Rhap-(1-3)-a-L-Rhap-(1--/(->1)(CH2)5NH2/
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Structure type:
oligomer
Aglycon:
(->1)(CH2)5NH2
Compound class:
CPS
Reference(s) to other database(s):
GTC:G28337FJ
Current Opinion in Chemical Biology
2020, "Recent progress in chemical synthesis of bacterial surface glycans"
CSDB ID 5073
(all data & tools)
Compound ID:
15916
b-L-Rhap-(1-4)-b-D-Glcp-(1-3)-+ | a-D-GlcpA-(1-6)-a-D-Glcp-(1-2)-a-L-Rhap-(1-3)-a-L-Rhap-(1--/spacer-CRM197 protein/
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Structure type:
oligomer
Aglycon:
spacer-CRM197 protein
Trivial name:
glycan epitope (glycotope)
Compound class:
CPS, glycoconjugate
Biochemical Society Transactions
2021, "Semi- and fully synthetic carbohydrate vaccines against pathogenic bacteria: recent developments"
CSDB ID 10973
(all data & tools)
Compound ID:
16034
b-L-Rhap-(1-4)-b-D-Glcp-(1-3)-+ | a-D-GlcpA-(1-6)-a-D-Glcp-(1-2)-a-L-Rhap-(1-3)-a-L-Rhap-(1--/spacer-CRM197/
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Structure type:
oligomer
Aglycon:
spacer-CRM197
Trivial name:
repeating unit conjugate
Chemical Reviews
2022, "Synthetic Glycans to Improve Current Glycoconjugate Vaccines and Fight Antimicrobial Resistance"
CSDB ID 20876
(all data & tools)
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