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Kobayashi S, Makino A, Matsumoto H, Kunii S, Ohmae M, Kiyosada T, Makiguchi K, Matsumoto A, Horie M, Shoda S
Enzymatic Polymerization to Novel Polysaccharides Having a Glucose-N-acetylglucosamine Repeating Unit, a Cellulose-Chitin Hybrid Polysaccharide
Biomacromolecules 7(5) (2006)
1644-1656
Bacillus
(NCBI TaxID 1386,
species name lookup)
Taxonomic group: bacteria / Firmicutes
(Phylum: Firmicutes)
Associated disease: infection due to Bacillus [ICD11:
XN9ZE 
]
NCBI PubMed ID: 16677050Publication DOI: 10.1021/bm060094qJournal NLM ID: 100892849Publisher: Washington, DC: American Chemical Society
Correspondence: Kobayashi S <kobayash

kit.ac.jp>
Institutions: Department of Materials Chemistry, Graduate School of Engineering, Kyoto University, Kyoto 615-8510, Japan, and Department of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Sendai 980-8579, Japan, Department of Materials Chemistry, Graduate School of Engineering, Kyoto University, Kyoto, Japan, Department of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Sendai, Japan
A cellulose-chitin hybrid polysaccharide having alternatingly β(1→4)-linked d-glucose (Glc) and N-acetyl-d-glucosamine (GlcNAc) was synthesized via two modes of enzymatic polymerization. First, a sugar oxazoline monomer of Glcβ(1→4)GlcNAc (1) was designed as a transition-state analogue substrate (TSAS) monomer for chitinase catalysis. Monomer 1 was recognized by chitinase from Bacillus sp., giving rise to a cellulose-chitin hybrid polysaccharide (2) via ring-opening polyaddition with perfect regioselectivity and stereochemistry. Molecular weight (M(n)) of 2 reached 4030, which corresponds to 22 saccharide units. Second, a sugar fluoride monomer of GlcNAcβ(1→4)Glc (3) was synthesized for the catalysis of cellulase from Trichoderma viride. The enzyme catalyzed polycondensation of 3, providing a cellulose-chitin hybrid polysaccharide (4) in regio- and stereoselective manner. M(n) of 4 reached 2840, which corresponds to 16 saccharide units. X-ray diffraction measurements revealed that these hybrid polysaccharides did not form any characteristic crystalline structures. Furthermore, these unnatural hybrids of 2 and 4 were successfully digested by lysozyme from human neutrophils
structure, chemistry, human, polysaccharide, repeating unit, polysaccharides, X-ray diffraction, molecular, X-ray, crystalline, form, hybrids, sugar, enzymatic, enzyme, engineering, Japan, measurement, substrate, Bacillus, transition state, stereoselective, analogue, molecular weight, D-glucose, GLC, saccharide, hybrid, catalysis, cellulase, Biomolecular, polymerization, stereochemistry, lysozyme, neutrophil, Neutrophils, polycondensation
Structure type: polymer chemical repeating unit ; 4030, n=8,11
Location inside paper: p.1645, Scheme 1, 2
Trivial name: cellulose-chitin hybrid polysaccharide
Contained glycoepitopes: IEDB_135813,IEDB_137340,IEDB_141807,IEDB_142488,IEDB_146664,IEDB_151531,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, NMR-2D, NMR, X-ray, MALDI-TOF MS, MALDI-TOF, enzymatic polymerization, chemical synthesis methods
Enzymes that release or process the structure: chitinase from Bacillus sp.
Biosynthesis and genetic data: biochemical data
Synthetic data: enzymatic
Comments, role: Origin: Bacillus sp. without species and strain assignment.
Related record ID(s): 20482, 20484
NCBI Taxonomy refs (TaxIDs): 1386Reference(s) to other database(s): GTC:G32902XB, GlycomeDB:
27876
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There is only one chemically distinct structure:
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Kobayashi S, Makino A, Matsumoto H, Kunii S, Ohmae M, Kiyosada T, Makiguchi K, Matsumoto A, Horie M, Shoda S
Enzymatic Polymerization to Novel Polysaccharides Having a Glucose-N-acetylglucosamine Repeating Unit, a Cellulose-Chitin Hybrid Polysaccharide
Biomacromolecules 7(5) (2006)
1644-1656
Trichoderma viride
(later renamed to: Hypocrea rufa anamorph)
(NCBI TaxID 5547,
species name lookup)
Taxonomic group: fungi / Ascomycota
(Phylum: Ascomycota)
The structure was elucidated in this paperNCBI PubMed ID: 16677050Publication DOI: 10.1021/bm060094qJournal NLM ID: 100892849Publisher: Washington, DC: American Chemical Society
Correspondence: Kobayashi S <kobayash

kit.ac.jp>
Institutions: Department of Materials Chemistry, Graduate School of Engineering, Kyoto University, Kyoto 615-8510, Japan, and Department of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Sendai 980-8579, Japan, Department of Materials Chemistry, Graduate School of Engineering, Kyoto University, Kyoto, Japan, Department of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Sendai, Japan
A cellulose-chitin hybrid polysaccharide having alternatingly β(1→4)-linked d-glucose (Glc) and N-acetyl-d-glucosamine (GlcNAc) was synthesized via two modes of enzymatic polymerization. First, a sugar oxazoline monomer of Glcβ(1→4)GlcNAc (1) was designed as a transition-state analogue substrate (TSAS) monomer for chitinase catalysis. Monomer 1 was recognized by chitinase from Bacillus sp., giving rise to a cellulose-chitin hybrid polysaccharide (2) via ring-opening polyaddition with perfect regioselectivity and stereochemistry. Molecular weight (M(n)) of 2 reached 4030, which corresponds to 22 saccharide units. Second, a sugar fluoride monomer of GlcNAcβ(1→4)Glc (3) was synthesized for the catalysis of cellulase from Trichoderma viride. The enzyme catalyzed polycondensation of 3, providing a cellulose-chitin hybrid polysaccharide (4) in regio- and stereoselective manner. M(n) of 4 reached 2840, which corresponds to 16 saccharide units. X-ray diffraction measurements revealed that these hybrid polysaccharides did not form any characteristic crystalline structures. Furthermore, these unnatural hybrids of 2 and 4 were successfully digested by lysozyme from human neutrophils
structure, chemistry, human, polysaccharide, repeating unit, polysaccharides, X-ray diffraction, molecular, X-ray, crystalline, form, hybrids, sugar, enzymatic, enzyme, engineering, Japan, measurement, substrate, Bacillus, transition state, stereoselective, analogue, molecular weight, D-glucose, GLC, saccharide, hybrid, catalysis, cellulase, Biomolecular, polymerization, stereochemistry, lysozyme, neutrophil, Neutrophils, polycondensation
Structure type: oligomer
Location inside paper: p. 1645, Scheme 1, 3a sugar fluoride monomer
Aglycon: fluorine
Contained glycoepitopes: IEDB_135813,IEDB_137340,IEDB_141807,IEDB_142488,IEDB_146664,IEDB_151531,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, NMR-2D, NMR, X-ray, MALDI-TOF MS, MALDI-TOF, enzymatic polymerization, chemical synthesis methods
Enzymes that release or process the structure: cellulase from Trichoderma viride
Biosynthesis and genetic data: biochemical data
Synthetic data: chemical
Comments, role: disaccharide derivative for enzymatic polymerization
Related record ID(s): 20116, 20484
NCBI Taxonomy refs (TaxIDs): 5547Reference(s) to other database(s): GTC:G53702EK
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NMR conditions: in D2O
[as TSV]
13C NMR data:
missing...
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
4,2 Ac - 2.04
4 bDGlcpN 4.55 3.68-3.73 3.64 3.64 3.68 3.64
bDGlc? 5.23 3.48 3.73 3.54 3.48 3.64-3.91
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
4,2 | Ac |
| 2.04 | |
4 | bDGlcpN | 4.55 | 3.68 3.73 | 3.64 | 3.64 | 3.68 | 3.64 |
| bDGlc? | 5.23 | 3.48 | 3.73 | 3.54 | 3.48 | 3.64 3.91 |
|
There is only one chemically distinct structure:
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Kobayashi S, Makino A, Matsumoto H, Kunii S, Ohmae M, Kiyosada T, Makiguchi K, Matsumoto A, Horie M, Shoda S
Enzymatic Polymerization to Novel Polysaccharides Having a Glucose-N-acetylglucosamine Repeating Unit, a Cellulose-Chitin Hybrid Polysaccharide
Biomacromolecules 7(5) (2006)
1644-1656
Trichoderma viride
(later renamed to: Hypocrea rufa anamorph)
(NCBI TaxID 5547,
species name lookup)
Taxonomic group: fungi / Ascomycota
(Phylum: Ascomycota)
The structure was elucidated in this paperNCBI PubMed ID: 16677050Publication DOI: 10.1021/bm060094qJournal NLM ID: 100892849Publisher: Washington, DC: American Chemical Society
Correspondence: Kobayashi S <kobayash

kit.ac.jp>
Institutions: Department of Materials Chemistry, Graduate School of Engineering, Kyoto University, Kyoto 615-8510, Japan, and Department of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Sendai 980-8579, Japan, Department of Materials Chemistry, Graduate School of Engineering, Kyoto University, Kyoto, Japan, Department of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Sendai, Japan
A cellulose-chitin hybrid polysaccharide having alternatingly β(1→4)-linked d-glucose (Glc) and N-acetyl-d-glucosamine (GlcNAc) was synthesized via two modes of enzymatic polymerization. First, a sugar oxazoline monomer of Glcβ(1→4)GlcNAc (1) was designed as a transition-state analogue substrate (TSAS) monomer for chitinase catalysis. Monomer 1 was recognized by chitinase from Bacillus sp., giving rise to a cellulose-chitin hybrid polysaccharide (2) via ring-opening polyaddition with perfect regioselectivity and stereochemistry. Molecular weight (M(n)) of 2 reached 4030, which corresponds to 22 saccharide units. Second, a sugar fluoride monomer of GlcNAcβ(1→4)Glc (3) was synthesized for the catalysis of cellulase from Trichoderma viride. The enzyme catalyzed polycondensation of 3, providing a cellulose-chitin hybrid polysaccharide (4) in regio- and stereoselective manner. M(n) of 4 reached 2840, which corresponds to 16 saccharide units. X-ray diffraction measurements revealed that these hybrid polysaccharides did not form any characteristic crystalline structures. Furthermore, these unnatural hybrids of 2 and 4 were successfully digested by lysozyme from human neutrophils
structure, chemistry, human, polysaccharide, repeating unit, polysaccharides, X-ray diffraction, molecular, X-ray, crystalline, form, hybrids, sugar, enzymatic, enzyme, engineering, Japan, measurement, substrate, Bacillus, transition state, stereoselective, analogue, molecular weight, D-glucose, GLC, saccharide, hybrid, catalysis, cellulase, Biomolecular, polymerization, stereochemistry, lysozyme, neutrophil, Neutrophils, polycondensation
Structure type: polymer chemical repeating unit ; 2840, n=8
Location inside paper: p. 1645, Scheme 1, 4
Trivial name: cellulose-chitin hybrid polysaccharide
Contained glycoepitopes: IEDB_135813,IEDB_137340,IEDB_141807,IEDB_142488,IEDB_146664,IEDB_151531,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, NMR-2D, NMR, X-ray, MALDI-TOF MS, MALDI-TOF, enzymatic polymerization, chemical synthesis methods
Enzymes that release or process the structure: cellulase from Trichoderma viride
Biosynthesis and genetic data: biochemical data
Synthetic data: chemical
Comments, role: published polymerization frame was shifted for conformity with other records
Related record ID(s): 20116, 20482
NCBI Taxonomy refs (TaxIDs): 5547Reference(s) to other database(s): GTC:G72324OF
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There is only one chemically distinct structure:
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