Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
The structure was elucidated in this paperNCBI PubMed ID: 38003613Publication DOI: 10.3390/ijms242216424Journal NLM ID: 101092791Publisher: Basel, Switzerland: MDPI
Correspondence: A. Palusiak <agata.palusiak

biol.uni.lodz.pl;>
Institutions: Department of Genetics and Microbiology, Institute of Biological Sciences, Maria Curie-Sklodowska University, Akademicka 19, 20-033 Lublin, Poland, Department of Biology of Bacteria, Faculty of Biology and Environmental Protection, University of Lodz, Banacha 12/16, 90-237 Lodz, Poland
The aim of the study was the serological and structural characterization of the lipopolysaccharide (LPS) O antigen from P. mirabilis Dm55 coming from the urine of a patient from Lodz. The Dm55 LPS was recognized in ELISA only by the O54 antiserum, suggesting a serological distinction of the Dm55 O antigen from all the 84 Proteus LPS serotypes described. The obtained polyclonal rabbit serum against P. mirabilis Dm55 reacted in ELISA and Western blotting with a few LPSs (including O54), but the reactions were weaker than those observed in the homologous system. The LPS of P. mirabilis Dm55 was subjected to mild acid hydrolysis, and the obtained high-molecular-mass O polysaccharide was chemically studied using sugar and methylation analyses, mass spectrometry, and 1H and 13C NMR spectroscopy, including 1H,1H NOESY, and 1H,13C HMBC experiments. The Dm55 O unit is a branched three-saccharide, and its linear fragment contains α-GalpNAc and β-Galp, whereas α-GlcpNAc occupies a terminal position. The Dm55 OPS shares a disaccharide epitope with the Proteus O54 antigen. Due to the structural differences of the studied O antigen from the other described Proteus O polysaccharides, we propose to classify the P. mirabilis Dm55 strain to a new Proteus O85 serogroup.
Lipopolysaccharide, NMR, O polysaccharide, Proteus mirabilis, serological classification, antiserum, cross-reacting LPS
Structure type: polymer chemical repeating unit
Location inside paper: table 3, Fig. 1, Fig. 7A P. mirabilis Dm55
Compound class: O-polysaccharide, O-antigen
Methods: 13C NMR, 1H NMR, NMR-2D, methylation, GLC-MS, SDS-PAGE, sugar analysis, ELISA, Western blotting, serological methods, GPC, mild-acid degradation
Related record ID(s): 25992
NCBI Taxonomy refs (TaxIDs): 584
Show glycosyltransferases
NMR conditions: in D2O at 305 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3,3,2 Ac 175.6 23.3
3,3 aDGlcpN 95.6 54.7 72.2 70.6 71.9 62.2
3 bDGalp 105.9 70.3 78.7 66.4 76.0 65.8
2 Ac 175.6 23.3
aDGalpN 98.4 49.7 79.2 69.8 71.8 62.2
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3,3,2 Ac - 2.04
3,3 aDGlcpN 5.04 3.97 3.82 3.74 4.13 3.76
3 bDGalp 4.53 3.62 3.66 4.06 3.62 3.66-4.06
2 Ac - 2.04
aDGalpN 4.99 4.36 4.04 4.29 4.03 3.76
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3,3,2 Ac 23.3/2.04
3,3 aDGlcpN 95.6/5.04 54.7/3.97 72.2/3.82 70.6/3.74 71.9/4.13 62.2/3.76
3 bDGalp 105.9/4.53 70.3/3.62 78.7/3.66 66.4/4.06 76.0/3.62 65.8/3.66-4.06
2 Ac 23.3/2.04
aDGalpN 98.4/4.99 49.7/4.36 79.2/4.04 69.8/4.29 71.8/4.03 62.2/3.76
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
3,3,2 | Ac |
| 2.04 | |
3,3 | aDGlcpN | 5.04 | 3.97 | 3.82 | 3.74 | 4.13 | 3.76 |
3 | bDGalp | 4.53 | 3.62 | 3.66 | 4.06 | 3.62 | 3.66 4.06 |
2 | Ac |
| 2.04 | |
| aDGalpN | 4.99 | 4.36 | 4.04 | 4.29 | 4.03 | 3.76 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
3,3,2 | Ac | 175.6 | 23.3 | |
3,3 | aDGlcpN | 95.6 | 54.7 | 72.2 | 70.6 | 71.9 | 62.2 |
3 | bDGalp | 105.9 | 70.3 | 78.7 | 66.4 | 76.0 | 65.8 |
2 | Ac | 175.6 | 23.3 | |
| aDGalpN | 98.4 | 49.7 | 79.2 | 69.8 | 71.8 | 62.2 |
|
There is only one chemically distinct structure:
Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
NCBI PubMed ID: 38003613Publication DOI: 10.3390/ijms242216424Journal NLM ID: 101092791Publisher: Basel, Switzerland: MDPI
Correspondence: A. Palusiak <agata.palusiak

biol.uni.lodz.pl;>
Institutions: Department of Genetics and Microbiology, Institute of Biological Sciences, Maria Curie-Sklodowska University, Akademicka 19, 20-033 Lublin, Poland, Department of Biology of Bacteria, Faculty of Biology and Environmental Protection, University of Lodz, Banacha 12/16, 90-237 Lodz, Poland
The aim of the study was the serological and structural characterization of the lipopolysaccharide (LPS) O antigen from P. mirabilis Dm55 coming from the urine of a patient from Lodz. The Dm55 LPS was recognized in ELISA only by the O54 antiserum, suggesting a serological distinction of the Dm55 O antigen from all the 84 Proteus LPS serotypes described. The obtained polyclonal rabbit serum against P. mirabilis Dm55 reacted in ELISA and Western blotting with a few LPSs (including O54), but the reactions were weaker than those observed in the homologous system. The LPS of P. mirabilis Dm55 was subjected to mild acid hydrolysis, and the obtained high-molecular-mass O polysaccharide was chemically studied using sugar and methylation analyses, mass spectrometry, and 1H and 13C NMR spectroscopy, including 1H,1H NOESY, and 1H,13C HMBC experiments. The Dm55 O unit is a branched three-saccharide, and its linear fragment contains α-GalpNAc and β-Galp, whereas α-GlcpNAc occupies a terminal position. The Dm55 OPS shares a disaccharide epitope with the Proteus O54 antigen. Due to the structural differences of the studied O antigen from the other described Proteus O polysaccharides, we propose to classify the P. mirabilis Dm55 strain to a new Proteus O85 serogroup.
Lipopolysaccharide, NMR, O polysaccharide, Proteus mirabilis, serological classification, antiserum, cross-reacting LPS
Structure type: polymer chemical repeating unit
Location inside paper: Fig. 7B P. mirabilis O54
Compound class: O-polysaccharide, O-antigen
Contained glycoepitopes: IEDB_130648,IEDB_130695,IEDB_134627,IEDB_136044,IEDB_137472,IEDB_137473,IEDB_1391961,IEDB_1391963,IEDB_141584,IEDB_141794,IEDB_141807,IEDB_143260,IEDB_151531,IEDB_190606,IEDB_885822,SB_165,SB_166,SB_187,SB_195,SB_23,SB_24,SB_7,SB_8,SB_88
Methods: 13C NMR, 1H NMR, NMR-2D, methylation, GLC-MS, SDS-PAGE, sugar analysis, ELISA, Western blotting, serological methods, GPC, mild-acid degradation
Related record ID(s): 22288
NCBI Taxonomy refs (TaxIDs): 584Reference(s) to other database(s): GTC:G08054OD
Show glycosyltransferases
There is only one chemically distinct structure: