Taxonomic group: fungi / Ascomycota
(Phylum: Ascomycota)
The structure was elucidated in this paperNCBI PubMed ID: 36871983Publication DOI: 10.1016/S1875-5364(23)60394-2Journal NLM ID: 101504416Publisher: Beijing: Science Press; Elsevier
Correspondence: L. Cai <caile

ynu.edu.cn>; Z. Ding <ztding

ynu.edu.cn>
Institutions: Functional Molecules Analysis and Biotransformation Key Laboratory of Universities in Yunnan Province, Key Laboratory of Medicinal Chemistry for Natural Resource, Ministry of Education, School of Chemical Science and Technology, Yunnan University, Kunming 650091, China
The fungus Xylaria sp. KYJ-15 was isolated from Illigera celebica. Based on the one strain many compounds (OSMAC) strategy, the strain was fermented on potato and rice solid media, respectively. As a result, two novel steroids, xylarsteroids A (1) and B (2), which are the first examples of C28-steroid with an unusual β- and γ-lactone ring, respectively, along with two new dihydroisocoumarin glycosides, xylarglycosides A (3) and B (4), were identified. Their structures were elucidated by spectroscopic methods, X-ray diffraction and electronic circular dichroism (ECD) experiments. All isolated compounds were evaluated for cytotoxicity, DPPH radical scavenging activity, acetylcholinesterase inhibitory and antimicrobial effect. Compound 1 exhibited potent AChE inhibitory activity with an IC50 value of 2.61 ± 0.05 μmol·L-1. The β-lactone ring unit of 1 is critical for its AChE inhibitory activity. The finding was further confirmed through exploring the interaction of 1 with AChE by molecular docking. In addition, both compounds 1 and 2 exhibited obvious antibacterial activity against Bacillus subtilis with a minimum inhibitory concentration (MIC) of 2 μg·mL-1. Compounds 3 and 4 exhibited antibacterial activities against Staphylococcus aureus with MICs of 4 and 2 μg·mL-1, respectively, which also exhibited DPPH radical scavenging activity comparable to the positive control with IC50 values of 9.2 ± 0.03 and 13.3 ± 0.01 μmol·L-1, respectively.
bioactivity, secondary metabolite, Xylaria sp., OSMAC strategy
Structure type: monomer ; 393.1175 [M+Na]+
C
17H
22O
9Location inside paper: Fig. 1, table 2, xylarglycoside A (compound 3)
Trivial name: xylarglycoside A, dihydroisocoumarin glycosid
Methods: 13C NMR, 1H NMR, NMR-2D, X-ray, TLC, composition analysis, HPLC, UV, extraction, column chromatography, fermentation, antibacterial assay, HR-ESI-MS, cytotoxicity assay, molecular docking, ECD, AChE inhibitory assay
Related record ID(s): 41413
NCBI Taxonomy refs (TaxIDs): 37991
Show glycosyltransferases
NMR conditions: in CD3OD
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6 C7 C8 C9 C10
4,4 Me 59.6
4 bDManp 96.6 71.1 73.8 77.1 76.2 61.3
Subst 167.9 79.6 71.6 135.4 120.4 136.2 118.3 161.9 107.2 16.5
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6 H7 H8 H9 H10
4,4 Me 3.35
4 bDManp 4.34 3.69 3.45 3.28 3.20 3.76-3.92
Subst - 5.12 4.98 - 7.05 7.61 7.07 - - 1.32
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6 C7/H7 C8/H8 C9/H9 C10/H10
4,4 Me 59.6/3.35
4 bDManp 96.6/4.34 71.1/3.69 73.8/3.45 77.1/3.28 76.2/3.20 61.3/3.76-3.92
Subst 79.6/5.12 71.6/4.98 120.4/7.05 136.2/7.61 118.3/7.07 16.5/1.32
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 | H7 | H8 | H9 | H10 |
4,4 | Me | 3.35 | |
4 | bDManp | 4.34 | 3.69 | 3.45 | 3.28 | 3.20 | 3.76 3.92 | |
| Subst |
| 5.12 | 4.98 |
| 7.05 | 7.61 | 7.07 |
|
| 1.32 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 | C7 | C8 | C9 | C10 |
4,4 | Me | 59.6 | |
4 | bDManp | 96.6 | 71.1 | 73.8 | 77.1 | 76.2 | 61.3 | |
| Subst | 167.9 | 79.6 | 71.6 | 135.4 | 120.4 | 136.2 | 118.3 | 161.9 | 107.2 | 16.5 |
|
There is only one chemically distinct structure:
Taxonomic group: fungi / Ascomycota
(Phylum: Ascomycota)
The structure was elucidated in this paperNCBI PubMed ID: 36871983Publication DOI: 10.1016/S1875-5364(23)60394-2Journal NLM ID: 101504416Publisher: Beijing: Science Press; Elsevier
Correspondence: L. Cai <caile

ynu.edu.cn>; Z. Ding <ztding

ynu.edu.cn>
Institutions: Functional Molecules Analysis and Biotransformation Key Laboratory of Universities in Yunnan Province, Key Laboratory of Medicinal Chemistry for Natural Resource, Ministry of Education, School of Chemical Science and Technology, Yunnan University, Kunming 650091, China
The fungus Xylaria sp. KYJ-15 was isolated from Illigera celebica. Based on the one strain many compounds (OSMAC) strategy, the strain was fermented on potato and rice solid media, respectively. As a result, two novel steroids, xylarsteroids A (1) and B (2), which are the first examples of C28-steroid with an unusual β- and γ-lactone ring, respectively, along with two new dihydroisocoumarin glycosides, xylarglycosides A (3) and B (4), were identified. Their structures were elucidated by spectroscopic methods, X-ray diffraction and electronic circular dichroism (ECD) experiments. All isolated compounds were evaluated for cytotoxicity, DPPH radical scavenging activity, acetylcholinesterase inhibitory and antimicrobial effect. Compound 1 exhibited potent AChE inhibitory activity with an IC50 value of 2.61 ± 0.05 μmol·L-1. The β-lactone ring unit of 1 is critical for its AChE inhibitory activity. The finding was further confirmed through exploring the interaction of 1 with AChE by molecular docking. In addition, both compounds 1 and 2 exhibited obvious antibacterial activity against Bacillus subtilis with a minimum inhibitory concentration (MIC) of 2 μg·mL-1. Compounds 3 and 4 exhibited antibacterial activities against Staphylococcus aureus with MICs of 4 and 2 μg·mL-1, respectively, which also exhibited DPPH radical scavenging activity comparable to the positive control with IC50 values of 9.2 ± 0.03 and 13.3 ± 0.01 μmol·L-1, respectively.
bioactivity, secondary metabolite, Xylaria sp., OSMAC strategy
Structure type: monomer ; 379.1000 [M+Na]+
C
17H
20O
9Location inside paper: Fig. 1, table 2, xylarglycoside B (compound 4)
Trivial name: xylarglycoside B, dihydroisocoumarin glycosid
Methods: 13C NMR, 1H NMR, NMR-2D, X-ray, TLC, composition analysis, HPLC, UV, extraction, column chromatography, fermentation, antibacterial assay, HR-ESI-MS, cytotoxicity assay, molecular docking, ECD, AChE inhibitory assay
Comments, role: published erroneous NMR chemical shifts of C5 #4_bDManp (70.0) was removed by CSDB staff
Related record ID(s): 41037
NCBI Taxonomy refs (TaxIDs): 37991
Show glycosyltransferases
NMR conditions: in CD3OD
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6 C7 C8 C9 C10
4 bDManp 98.4 71.9 73.3 72.9 ? 60.8
Subst 168.1 78.4 73.6 137.0 120.7 136.7 117.9 162.3 107.4 16.8
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6 H7 H8 H9 H10
4 bDManp 5.11 3.36 3.44 3.22 3.23 3.51
Subst - 5.04 4.65 - 7.01 7.49 6.92 - - 1.22
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6 C7/H7 C8/H8 C9/H9 C10/H10
4 bDManp 98.4/5.11 71.9/3.36 73.3/3.44 72.9/3.22 ?/3.23 60.8/3.51
Subst 78.4/5.04 73.6/4.65 120.7/7.01 136.7/7.49 117.9/6.92 16.8/1.22
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 | H7 | H8 | H9 | H10 |
4 | bDManp | 5.11 | 3.36 | 3.44 | 3.22 | 3.23 | 3.51 | |
| Subst |
| 5.04 | 4.65 |
| 7.01 | 7.49 | 6.92 |
|
| 1.22 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 | C7 | C8 | C9 | C10 |
4 | bDManp | 98.4 | 71.9 | 73.3 | 72.9 | ? | 60.8 | |
| Subst | 168.1 | 78.4 | 73.6 | 137.0 | 120.7 | 136.7 | 117.9 | 162.3 | 107.4 | 16.8 |
|
 The spectrum also has 1 signal at unknown position (not plotted). |
There is only one chemically distinct structure: