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Omarsdottir S, Petersen BO, Paulsen BS, Togola A, Duus JØ, Olafsdottir ES
Structural characterisation of novel lichen heteroglycans by NMR spectroscopy and methylation analysis
Carbohydrate Research 341(14) (2006)
2449-2455
Thamnolia vermicularis ssp. subuliformis
(previously named: Thamnolia subuliformis)
(NCBI TaxID 1972712,
species name lookup)
Taxonomic group: fungi / Ascomycota
(Phylum: Ascomycota)
The structure was elucidated in this paperNCBI PubMed ID: 16884705Publication DOI: 10.1016/j.carres.2006.06.026Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: Olafsdottir ES <elinsol

hi.is>
Institutions: University of Iceland, Faculty of Pharmacy, Reykjavik, Iceland, Carlsberg Laboratory, Valby, Denmark, University of Oslo, Institute of Pharmacy, Department of Pharmacognosy, Oslo, Norway
Two galactofuranomannans, Ths-4 and Ths-5, were isolated from the lichen, Thamnolia vermicularis var. subuliformis, using ethanol fractionation and anion-exchange and size-exclusion chromatography. The average molecular weights of Ths-4 and Ths-5 were estimated to be 19 and 200 kDa, respectively. Structural characterisation of Ths-4, Ths-5 and their partially hydrolysed derivatives was performed by methanolysis and methylation analysis. The intact and partially hydrolysed Ths-4 was further analysed using NMR spectroscopy (1D, COSY, NOESY, TOCSY, HSQC and HMBC). According to the data obtained, the heteroglycans Ths-4 and Ths-5 have similar structures, but have large differences in molecular weight. The structure is composed of 3-O-linked and 5-O-linked galactofuranosyl chains linked to a mannan core. The mannan core consists of a main chain of alpha-(1-->6)-linked mannopyranosyl residues, substituted at O-2 with either a single alpha-mannopyranosyl unit or an alpha-Manp-(1-->2)-alpha-Manp-(1-->2)-alpha-Manp group in the ratio of approximately 1:3, respectively. The polysaccharides have idealised repeating blocks as is shown.
methylation analysis, NMR spectroscopy, lichens, Galactofuranomannan, Thamnolia
Structure type: homopolymer
Location inside paper: abstract, p. 2451, Ths-4
Trivial name: galactan, PAM-galactan, galactofuranomannan
Compound class: EPS, cell wall polysaccharide, arabinogalactan, galactan
Contained glycoepitopes: IEDB_136095,IEDB_137472,IEDB_149137,IEDB_190606,IEDB_885812
Methods: 13C NMR, 1H NMR, NMR-2D, methylation, GC-MS, sugar analysis, acid hydrolysis, anion-exchange chromatography, GC, methanolysis, extraction, dialysis, HPGPC, partial hydrolysis with oxalic acid
Comments, role: The structure is composed of 3-O-linked and 5-O-linked galactofuranosyl chains linked to a mannan core (see ID 42089,42090).
Related record ID(s): 42089, 42090
NCBI Taxonomy refs (TaxIDs): 1972712Reference(s) to other database(s): GTC:G92108RF, CCSD:
7498, CBank-STR:2546
Show glycosyltransferases
NMR conditions: in D2O at 298 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
bDGalf 107.6 81.8 77.1 82.1 76.1 61.2
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
bDGalf 5.13 4.09 4.05 4.10 3.89 3.75
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
bDGalf 107.6/5.13 81.8/4.09 77.1/4.05 82.1/4.10 76.1/3.89 61.2/3.75
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| bDGalf | 5.13 | 4.09 | 4.05 | 4.10 | 3.89 | 3.75 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| bDGalf | 107.6 | 81.8 | 77.1 | 82.1 | 76.1 | 61.2 |
|
There is only one chemically distinct structure:
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Omarsdottir S, Petersen BO, Paulsen BS, Togola A, Duus JØ, Olafsdottir ES
Structural characterisation of novel lichen heteroglycans by NMR spectroscopy and methylation analysis
Carbohydrate Research 341(14) (2006)
2449-2455
Thamnolia vermicularis ssp. subuliformis
(previously named: Thamnolia subuliformis)
(NCBI TaxID 1972712,
species name lookup)
Taxonomic group: fungi / Ascomycota
(Phylum: Ascomycota)
The structure was elucidated in this paperNCBI PubMed ID: 16884705Publication DOI: 10.1016/j.carres.2006.06.026Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: Olafsdottir ES <elinsol

hi.is>
Institutions: University of Iceland, Faculty of Pharmacy, Reykjavik, Iceland, Carlsberg Laboratory, Valby, Denmark, University of Oslo, Institute of Pharmacy, Department of Pharmacognosy, Oslo, Norway
Two galactofuranomannans, Ths-4 and Ths-5, were isolated from the lichen, Thamnolia vermicularis var. subuliformis, using ethanol fractionation and anion-exchange and size-exclusion chromatography. The average molecular weights of Ths-4 and Ths-5 were estimated to be 19 and 200 kDa, respectively. Structural characterisation of Ths-4, Ths-5 and their partially hydrolysed derivatives was performed by methanolysis and methylation analysis. The intact and partially hydrolysed Ths-4 was further analysed using NMR spectroscopy (1D, COSY, NOESY, TOCSY, HSQC and HMBC). According to the data obtained, the heteroglycans Ths-4 and Ths-5 have similar structures, but have large differences in molecular weight. The structure is composed of 3-O-linked and 5-O-linked galactofuranosyl chains linked to a mannan core. The mannan core consists of a main chain of alpha-(1-->6)-linked mannopyranosyl residues, substituted at O-2 with either a single alpha-mannopyranosyl unit or an alpha-Manp-(1-->2)-alpha-Manp-(1-->2)-alpha-Manp group in the ratio of approximately 1:3, respectively. The polysaccharides have idealised repeating blocks as is shown.
methylation analysis, NMR spectroscopy, lichens, Galactofuranomannan, Thamnolia
Structure type: homopolymer
Location inside paper: abstract, p. 2451, Ths-4
Trivial name: galactofuranomannan
Compound class: cell wall polysaccharide
Contained glycoepitopes: IEDB_136095,IEDB_137472,IEDB_190606
Methods: 13C NMR, 1H NMR, NMR-2D, methylation, GC-MS, sugar analysis, acid hydrolysis, anion-exchange chromatography, GC, methanolysis, extraction, dialysis, HPGPC, partial hydrolysis with oxalic acid
Comments, role: The structure is composed of 3-O-linked and 5-O-linked galactofuranosyl chains linked to a mannan core (see ID 41833,42090).
Related record ID(s): 41833, 42090
NCBI Taxonomy refs (TaxIDs): 1972712Reference(s) to other database(s): GTC:G81592MX
Show glycosyltransferases
NMR conditions: in D2O at 298 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
bDGalf 107.6 80.1 82.5 82.6 71.3 63.4
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
bDGalf 5.14 4.23 4.13 3.97 3.84 3.61-3.65
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
bDGalf 107.6/5.14 80.1/4.23 82.5/4.13 82.6/3.97 71.3/3.84 63.4/3.61-3.65
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| bDGalf | 5.14 | 4.23 | 4.13 | 3.97 | 3.84 | 3.61 3.65 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| bDGalf | 107.6 | 80.1 | 82.5 | 82.6 | 71.3 | 63.4 |
|
There is only one chemically distinct structure:
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Omarsdottir S, Petersen BO, Paulsen BS, Togola A, Duus JØ, Olafsdottir ES
Structural characterisation of novel lichen heteroglycans by NMR spectroscopy and methylation analysis
Carbohydrate Research 341(14) (2006)
2449-2455
a-Manp-(1-2)-a-Manp-(1-2)-a-Manp-(1-2)-+
|
a-Manp-(1-2)-a-Manp-(1-2)-a-Manp-(1-2)-+ |
| |
a-Manp-(1-2)-a-Manp-(1-2)-a-Manp-(1-2)-+ | |
| | |
a-Manp-(1-2)-+ | | |
| | | |
-6)-a-Manp-(1-6)-a-Manp-(1-6)-a-Manp-(1-6)-a-Manp-(1- |
Show graphically |
Thamnolia vermicularis ssp. subuliformis
(previously named: Thamnolia subuliformis)
(NCBI TaxID 1972712,
species name lookup)
Taxonomic group: fungi / Ascomycota
(Phylum: Ascomycota)
The structure was elucidated in this paperNCBI PubMed ID: 16884705Publication DOI: 10.1016/j.carres.2006.06.026Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: Olafsdottir ES <elinsol

hi.is>
Institutions: University of Iceland, Faculty of Pharmacy, Reykjavik, Iceland, Carlsberg Laboratory, Valby, Denmark, University of Oslo, Institute of Pharmacy, Department of Pharmacognosy, Oslo, Norway
Two galactofuranomannans, Ths-4 and Ths-5, were isolated from the lichen, Thamnolia vermicularis var. subuliformis, using ethanol fractionation and anion-exchange and size-exclusion chromatography. The average molecular weights of Ths-4 and Ths-5 were estimated to be 19 and 200 kDa, respectively. Structural characterisation of Ths-4, Ths-5 and their partially hydrolysed derivatives was performed by methanolysis and methylation analysis. The intact and partially hydrolysed Ths-4 was further analysed using NMR spectroscopy (1D, COSY, NOESY, TOCSY, HSQC and HMBC). According to the data obtained, the heteroglycans Ths-4 and Ths-5 have similar structures, but have large differences in molecular weight. The structure is composed of 3-O-linked and 5-O-linked galactofuranosyl chains linked to a mannan core. The mannan core consists of a main chain of alpha-(1-->6)-linked mannopyranosyl residues, substituted at O-2 with either a single alpha-mannopyranosyl unit or an alpha-Manp-(1-->2)-alpha-Manp-(1-->2)-alpha-Manp group in the ratio of approximately 1:3, respectively. The polysaccharides have idealised repeating blocks as is shown.
methylation analysis, NMR spectroscopy, lichens, Galactofuranomannan, Thamnolia
Structure type: structural motif or average structure
Location inside paper: abstract, p. 2451, mannan core, Ths-4
Trivial name: galactofuranomannan
Compound class: cell wall polysaccharide
Contained glycoepitopes: IEDB_130701,IEDB_136104,IEDB_1394182,IEDB_140116,IEDB_141793,IEDB_141795,IEDB_141828,IEDB_141829,IEDB_141830,IEDB_141831,IEDB_141832,IEDB_141833,IEDB_143632,IEDB_144983,IEDB_152206,IEDB_153220,IEDB_153762,IEDB_153763,IEDB_164480,IEDB_76933,IEDB_857732,IEDB_857735,IEDB_983930,SB_136,SB_191,SB_196,SB_198,SB_44,SB_67,SB_72
Methods: 13C NMR, 1H NMR, NMR-2D, methylation, GC-MS, sugar analysis, acid hydrolysis, anion-exchange chromatography, GC, methanolysis, extraction, dialysis, HPGPC, partial hydrolysis with oxalic acid
Comments, role: The structure of the heteroglycans Ths-4 (MW 19000) is composed of 3-O-linked and 5-O-linked galactofuranosyl chains linked to a mannan core (see ID 41833,42089).
Related record ID(s): 41833, 42089
NCBI Taxonomy refs (TaxIDs): 1972712Reference(s) to other database(s): GTC:G92664RZ
Show glycosyltransferases
NMR conditions: in D2O at 298 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
6,6,6,2 a?Manp 102.8 70.5 71.2 67.4 73.9 61.5
6,6,6 a?Manp 98.8 79.2 70.7 66.8 71.1 66.0
6,6,2,2,2 a?Manp 102.8 70.5 71.2 67.4 73.9 61.5
6,6,2,2 a?Manp 101.3 78.8 70.7 67.5 78.9 61.5
6,6,2 a?Manp 101.3 78.8 70.7 67.5 78.9 61.5
6,6 a?Manp 98.8 79.2 70.7 66.8 71.1 66.0
6,2,2,2 a?Manp 102.8 70.5 71.2 67.4 73.9 61.5
6,2,2 a?Manp 101.3 78.8 70.7 67.5 78.9 61.5
6,2 a?Manp 101.3 78.8 70.7 67.5 78.9 61.5
6 a?Manp 98.8 79.2 70.7 66.8 71.1 66.0
2,2,2 a?Manp 102.8 70.5 71.2 67.4 73.9 61.5
2,2 a?Manp 101.3 78.8 70.7 67.5 78.9 61.5
2 a?Manp 101.3 78.8 70.7 67.5 78.9 61.5
a?Manp 98.8 79.2 70.7 66.8 71.1 66.0
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
6,6,6,2 a?Manp 4.99 4.03 3.76 3.62 3.71 3.70-3.84
6,6,6 a?Manp 5.06 3.98 3.88 3.78 3.76 3.65-3.96
6,6,2,2,2 a?Manp 4.99 4.02 3.79 3.62 3.71 3.70-3.84
6,6,2,2 a?Manp 5.18 4.05 3.90 3.62 3.68 3.70-3.84
6,6,2 a?Manp 5.18 4.06 3.91 3.63 3.72 3.70-3.84
6,6 a?Manp 5.06 3.98 3.92 3.78 3.76 3.65-3.96
6,2,2,2 a?Manp 4.99 4.02 3.79 3.62 3.71 3.70-3.84
6,2,2 a?Manp 5.18 4.05 3.90 3.62 3.68 3.70-3.84
6,2 a?Manp 5.18 4.06 3.91 3.63 3.72 3.70-3.84
6 a?Manp 5.06 3.98 3.92 3.78 3.76 3.65-3.96
2,2,2 a?Manp 4.99 4.02 3.79 3.62 3.71 3.70-3.84
2,2 a?Manp 5.18 4.05 3.90 3.62 3.68 3.70-3.84
2 a?Manp 5.18 4.06 3.91 3.63 3.72 3.70-3.84
a?Manp 5.06 3.98 3.92 3.78 3.76 3.65-3.96
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
6,6,6,2 a?Manp 102.8/4.99 70.5/4.03 71.2/3.76 67.4/3.62 73.9/3.71 61.5/3.70-3.84
6,6,6 a?Manp 98.8/5.06 79.2/3.98 70.7/3.88 66.8/3.78 71.1/3.76 66.0/3.65-3.96
6,6,2,2,2 a?Manp 102.8/4.99 70.5/4.02 71.2/3.79 67.4/3.62 73.9/3.71 61.5/3.70-3.84
6,6,2,2 a?Manp 101.3/5.18 78.8/4.05 70.7/3.90 67.5/3.62 78.9/3.68 61.5/3.70-3.84
6,6,2 a?Manp 101.3/5.18 78.8/4.06 70.7/3.91 67.5/3.63 78.9/3.72 61.5/3.70-3.84
6,6 a?Manp 98.8/5.06 79.2/3.98 70.7/3.92 66.8/3.78 71.1/3.76 66.0/3.65-3.96
6,2,2,2 a?Manp 102.8/4.99 70.5/4.02 71.2/3.79 67.4/3.62 73.9/3.71 61.5/3.70-3.84
6,2,2 a?Manp 101.3/5.18 78.8/4.05 70.7/3.90 67.5/3.62 78.9/3.68 61.5/3.70-3.84
6,2 a?Manp 101.3/5.18 78.8/4.06 70.7/3.91 67.5/3.63 78.9/3.72 61.5/3.70-3.84
6 a?Manp 98.8/5.06 79.2/3.98 70.7/3.92 66.8/3.78 71.1/3.76 66.0/3.65-3.96
2,2,2 a?Manp 102.8/4.99 70.5/4.02 71.2/3.79 67.4/3.62 73.9/3.71 61.5/3.70-3.84
2,2 a?Manp 101.3/5.18 78.8/4.05 70.7/3.90 67.5/3.62 78.9/3.68 61.5/3.70-3.84
2 a?Manp 101.3/5.18 78.8/4.06 70.7/3.91 67.5/3.63 78.9/3.72 61.5/3.70-3.84
a?Manp 98.8/5.06 79.2/3.98 70.7/3.92 66.8/3.78 71.1/3.76 66.0/3.65-3.96
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
6,6,6,2 | a?Manp | 4.99 | 4.03 | 3.76 | 3.62 | 3.71 | 3.70 3.84 |
6,6,6 | a?Manp | 5.06 | 3.98 | 3.88 | 3.78 | 3.76 | 3.65 3.96 |
6,6,2,2,2 | a?Manp | 4.99 | 4.02 | 3.79 | 3.62 | 3.71 | 3.70 3.84 |
6,6,2,2 | a?Manp | 5.18 | 4.05 | 3.90 | 3.62 | 3.68 | 3.70 3.84 |
6,6,2 | a?Manp | 5.18 | 4.06 | 3.91 | 3.63 | 3.72 | 3.70 3.84 |
6,6 | a?Manp | 5.06 | 3.98 | 3.92 | 3.78 | 3.76 | 3.65 3.96 |
6,2,2,2 | a?Manp | 4.99 | 4.02 | 3.79 | 3.62 | 3.71 | 3.70 3.84 |
6,2,2 | a?Manp | 5.18 | 4.05 | 3.90 | 3.62 | 3.68 | 3.70 3.84 |
6,2 | a?Manp | 5.18 | 4.06 | 3.91 | 3.63 | 3.72 | 3.70 3.84 |
6 | a?Manp | 5.06 | 3.98 | 3.92 | 3.78 | 3.76 | 3.65 3.96 |
2,2,2 | a?Manp | 4.99 | 4.02 | 3.79 | 3.62 | 3.71 | 3.70 3.84 |
2,2 | a?Manp | 5.18 | 4.05 | 3.90 | 3.62 | 3.68 | 3.70 3.84 |
2 | a?Manp | 5.18 | 4.06 | 3.91 | 3.63 | 3.72 | 3.70 3.84 |
| a?Manp | 5.06 | 3.98 | 3.92 | 3.78 | 3.76 | 3.65 3.96 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
6,6,6,2 | a?Manp | 102.8 | 70.5 | 71.2 | 67.4 | 73.9 | 61.5 |
6,6,6 | a?Manp | 98.8 | 79.2 | 70.7 | 66.8 | 71.1 | 66.0 |
6,6,2,2,2 | a?Manp | 102.8 | 70.5 | 71.2 | 67.4 | 73.9 | 61.5 |
6,6,2,2 | a?Manp | 101.3 | 78.8 | 70.7 | 67.5 | 78.9 | 61.5 |
6,6,2 | a?Manp | 101.3 | 78.8 | 70.7 | 67.5 | 78.9 | 61.5 |
6,6 | a?Manp | 98.8 | 79.2 | 70.7 | 66.8 | 71.1 | 66.0 |
6,2,2,2 | a?Manp | 102.8 | 70.5 | 71.2 | 67.4 | 73.9 | 61.5 |
6,2,2 | a?Manp | 101.3 | 78.8 | 70.7 | 67.5 | 78.9 | 61.5 |
6,2 | a?Manp | 101.3 | 78.8 | 70.7 | 67.5 | 78.9 | 61.5 |
6 | a?Manp | 98.8 | 79.2 | 70.7 | 66.8 | 71.1 | 66.0 |
2,2,2 | a?Manp | 102.8 | 70.5 | 71.2 | 67.4 | 73.9 | 61.5 |
2,2 | a?Manp | 101.3 | 78.8 | 70.7 | 67.5 | 78.9 | 61.5 |
2 | a?Manp | 101.3 | 78.8 | 70.7 | 67.5 | 78.9 | 61.5 |
| a?Manp | 98.8 | 79.2 | 70.7 | 66.8 | 71.1 | 66.0 |
|
There are too many chemically distinct structures (~16384), so only one is shown:
-6)[aDManp(1-2)]aDManp(1-6)[aDManp(1-2)aDManp(1-2)aDManp(1-2)]aDManp(1-6)[aDManp(1-2)aDManp(1-2)aDManp(1-2)]aDManp(1-6)[aDManp(1-2)aDManp(1-2)aDManp(1-2)]aDManp(1-
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