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Huang TT, Wages JM
New-to-nature sophorose analog: a potent inducer for gene expression in Trichoderma reesei
Enzyme and Microbial Technology 85 (2016) 
44-50
 
Starmerella bombicola ATCC 22214
 (previously named: Candida bombicola ATCC 22214)
(Ancestor NCBI TaxID 75736,
species name lookup)
 
Taxonomic group: fungi / Ascomycota 
(Phylum: Ascomycota)
 
NCBI PubMed ID: 26920480Publication DOI: 10.1016/j.enzmictec.2016.01.003Journal NLM ID: 8003761Correspondence: Huang TT <huan45

gmail.com>
Institutions: Panorama Research, Inc., Sunnyvale, CA, USA, Sophoro Biotechnologies, Sunnyvale, CA, USA
Controlled hydrolysis of lactonic sophorolipids from Starmerella bombicola yields a previously undescribed sophorose analog that potently induces cellulase in Trichoderma reesei Rut-C30. Acid treatment of natural sophorolipids results in a mixture of monoacetylated, deacetylated, and diacetylated sophorolipids in acidic and lactonic forms. Isolation of the active components of the mixture, followed by structure determination by MS and NMR, reveals a new chemical entity, in which the lactone ring has been opened at the C-1' rather than at the C-4″ position of the sophorose moiety. This sophorose ester is resistant to degradation by the host and is at least 28 times more powerful an inducer than sophorose in shake-flask culture. Even at low concentrations (0.05 mM), the chemically modified sophorolipid effectively induces cellulase. With further improvements, this highly enabling technology can potentially reduce the cost of enzymes produced in T. reesei and can facilitate the rapid deployment of enzyme plants to support the nascent cellulosic biofuels and biochemicals industries.
gene expression, fermentation, cellulase, Trichoderma, sophorolipid, inducer
Structure type: cyclic polymer repeating unit ; 711 [M+Na]+
Location inside paper: fig. 1A, fig. 2A
Compound class: glycolipid
Contained glycoepitopes: IEDB_140628,IEDB_142488,IEDB_146664,IEDB_983931,SB_192 
Methods: 13C NMR, 1H NMR, TLC, HSQC, HCl hydrolysis, HPLC/MS
Comments, role: diacetylated lactonic component of crude mixture of harvested sophorolipids produced by S. bombicola ATCC 22214 
Related record ID(s): 42712, 42713, 42714
NCBI Taxonomy refs (TaxIDs): 75736
Show glycosyltransferases
 
There is only one chemically distinct structure:
 
 
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Huang TT, Wages JM
New-to-nature sophorose analog: a potent inducer for gene expression in Trichoderma reesei
Enzyme and Microbial Technology 85 (2016) 
44-50
 
Starmerella bombicola ATCC 22214
 (previously named: Candida bombicola ATCC 22214)
(Ancestor NCBI TaxID 75736,
species name lookup)
 
Taxonomic group: fungi / Ascomycota 
(Phylum: Ascomycota)
 
NCBI PubMed ID: 26920480Publication DOI: 10.1016/j.enzmictec.2016.01.003Journal NLM ID: 8003761Correspondence: Huang TT <huan45

gmail.com>
Institutions: Panorama Research, Inc., Sunnyvale, CA, USA, Sophoro Biotechnologies, Sunnyvale, CA, USA
Controlled hydrolysis of lactonic sophorolipids from Starmerella bombicola yields a previously undescribed sophorose analog that potently induces cellulase in Trichoderma reesei Rut-C30. Acid treatment of natural sophorolipids results in a mixture of monoacetylated, deacetylated, and diacetylated sophorolipids in acidic and lactonic forms. Isolation of the active components of the mixture, followed by structure determination by MS and NMR, reveals a new chemical entity, in which the lactone ring has been opened at the C-1' rather than at the C-4″ position of the sophorose moiety. This sophorose ester is resistant to degradation by the host and is at least 28 times more powerful an inducer than sophorose in shake-flask culture. Even at low concentrations (0.05 mM), the chemically modified sophorolipid effectively induces cellulase. With further improvements, this highly enabling technology can potentially reduce the cost of enzymes produced in T. reesei and can facilitate the rapid deployment of enzyme plants to support the nascent cellulosic biofuels and biochemicals industries.
gene expression, fermentation, cellulase, Trichoderma, sophorolipid, inducer
Structure type: oligomer 
C
34H
58O
14Location inside paper: fig. 1B, fig. 2A
Trivial name: sophorolipid
Compound class: glycolipid, sophorolipid
Contained glycoepitopes: IEDB_140628,IEDB_142488,IEDB_146664,IEDB_983931,SB_192 
Methods: 13C NMR, 1H NMR, TLC, HSQC, HCl hydrolysis, HPLC/MS
Comments, role: monoacetylated acidic component of crude mixture of harvested sophorolipids produced by S. bombicola ATCC 22214 
Related record ID(s): 42711, 42713, 42714
NCBI Taxonomy refs (TaxIDs): 75736
Show glycosyltransferases
 
There is only one chemically distinct structure:
 
 
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Huang TT, Wages JM
New-to-nature sophorose analog: a potent inducer for gene expression in Trichoderma reesei
Enzyme and Microbial Technology 85 (2016) 
44-50
 
Starmerella bombicola ATCC 22214
 (previously named: Candida bombicola ATCC 22214)
(Ancestor NCBI TaxID 75736,
species name lookup)
 
Taxonomic group: fungi / Ascomycota 
(Phylum: Ascomycota)
 
The structure was elucidated in this paperNCBI PubMed ID: 26920480Publication DOI: 10.1016/j.enzmictec.2016.01.003Journal NLM ID: 8003761Correspondence: Huang TT <huan45

gmail.com>
Institutions: Panorama Research, Inc., Sunnyvale, CA, USA, Sophoro Biotechnologies, Sunnyvale, CA, USA
Controlled hydrolysis of lactonic sophorolipids from Starmerella bombicola yields a previously undescribed sophorose analog that potently induces cellulase in Trichoderma reesei Rut-C30. Acid treatment of natural sophorolipids results in a mixture of monoacetylated, deacetylated, and diacetylated sophorolipids in acidic and lactonic forms. Isolation of the active components of the mixture, followed by structure determination by MS and NMR, reveals a new chemical entity, in which the lactone ring has been opened at the C-1' rather than at the C-4″ position of the sophorose moiety. This sophorose ester is resistant to degradation by the host and is at least 28 times more powerful an inducer than sophorose in shake-flask culture. Even at low concentrations (0.05 mM), the chemically modified sophorolipid effectively induces cellulase. With further improvements, this highly enabling technology can potentially reduce the cost of enzymes produced in T. reesei and can facilitate the rapid deployment of enzyme plants to support the nascent cellulosic biofuels and biochemicals industries.
gene expression, fermentation, cellulase, Trichoderma, sophorolipid, inducer
Structure type: oligomer ; 665 [M+H]+
Location inside paper: fig. 1C, Table 2, fig. 3
Compound class: glycolipid
Contained glycoepitopes: IEDB_140628,IEDB_142488,IEDB_146664,IEDB_983931,SB_192 
Methods: 13C NMR, 1H NMR, TLC, HSQC, HCl hydrolysis, HPLC/MS
Biological activity: significantly induces cellulase in Trichoderma reesei Rut-C30 (see Table 2)
Synthetic data: chemical
Comments, role: obtained by acid hydrolysis of crude mixture of harvested sophorolipids produced by S. bombicola ATCC 22214 (major component); NMR solvent and temperature were not specificied 
Related record ID(s): 42711, 42712, 42714
NCBI Taxonomy refs (TaxIDs): 75736
Show glycosyltransferases
 
[as TSV]
13C NMR data:
Linkage	Residue	C1	C2	C3	C4	C5	C6	C7	C8	C9	C10	C11	C12	C13	C14	C15	C16	C17	C18
2,4	l?17HOOle	172.3	33.7	24.6	25.6-29.6	25.6-29.6	25.6-29.6	25.6-29.6	26.9	129.6	129.6	26.9	25.6-29	25.6-29	25.6-29	25.6-29	39.0	71.5	22.2
2	bDGlcp	104.7	74.1	72.3	70.6	67.3	62.6
6	Ac	171.2	19.5
	bDGlcp	92.4	82.1	74.1	70.2	71.9	61.4
1H NMR data:
Linkage	Residue	H1	H2	H3	H4	H5	H6	H7	H8	H9	H10	H11	H12	H13	H14	H15	H16	H17	H18
2,4	l?17HOOle	-	2.36	1.62	1.27-1.46	1.27-1.46	1.27-1.46	1.27-1.46	2.00-2.05	5.34	5.34	2.00-2.05	1.27-1.46	1.27-1.46	1.27-1.46	1.27-1.46	1.40	3.78	1.14
2	bDGlcp	4.53	3.40	3.85	4.82	3.68	4.08-4.14
6	Ac	-	2.04
	bDGlcp	5.31	3.42	3.56	3.36	3.66	3.68-3.78
1H/13C HSQC data:
Linkage	Residue	C1/H1	C2/H2	C3/H3	C4/H4	C5/H5	C6/H6	C7/H7	C8/H8	C9/H9	C10/H10	C11/H11	C12/H12	C13/H13	C14/H14	C15/H15	C16/H16	C17/H17	C18/H18
2,4	l?17HOOle		33.7/2.36	24.6/1.62	25.6-29.6/1.27-1.46	25.6-29.6/1.27-1.46	25.6-29.6/1.27-1.46	25.6-29.6/1.27-1.46	26.9/2.00-2.05	129.6/5.34	129.6/5.34	26.9/2.00-2.05	25.6-29/1.27-1.46	25.6-29/1.27-1.46	25.6-29/1.27-1.46	25.6-29/1.27-1.46	39.0/1.40	71.5/3.78	22.2/1.14
2	bDGlcp	104.7/4.53	74.1/3.40	72.3/3.85	70.6/4.82	67.3/3.68	62.6/4.08-4.14
6	Ac		19.5/2.04
	bDGlcp	92.4/5.31	82.1/3.42	74.1/3.56	70.2/3.36	71.9/3.66	61.4/3.68-3.78
1H NMR data:
 | Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 | H7 | H8 | H9 | H10 | H11 | H12 | H13 | H14 | H15 | H16 | H17 | H18 |  
| 2,4 | l?17HOOle | 
  | 2.36 | 1.62 | 1.27 1.46 | 1.27 1.46 | 1.27 1.46 | 1.27 1.46 | 2.00 2.05 | 5.34 | 5.34 | 2.00 2.05 | 1.27 1.46 | 1.27 1.46 | 1.27 1.46 | 1.27 1.46 | 1.40 | 3.78 | 1.14 |  
| 2 | bDGlcp | 4.53 | 3.40 | 3.85 | 4.82 | 3.68 | 4.08 4.14 |   |  
| 6 | Ac | 
  | 2.04 |   |  
|   | bDGlcp | 5.31 | 3.42 | 3.56 | 3.36 | 3.66 | 3.68 3.78 |   |  
   
  | 
13C NMR data:
 | Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 | C7 | C8 | C9 | C10 | C11 | C12 | C13 | C14 | C15 | C16 | C17 | C18 |  
| 2,4 | l?17HOOle | 172.3 | 33.7 | 24.6 | 25.6 29.6 | 25.6 29.6 | 25.6 29.6 | 25.6 29.6 | 26.9 | 129.6 | 129.6 | 26.9 | 25.6 29 | 25.6 29 | 25.6 29 | 25.6 29 | 39.0 | 71.5 | 22.2 |  
| 2 | bDGlcp | 104.7 | 74.1 | 72.3 | 70.6 | 67.3 | 62.6 |   |  
| 6 | Ac | 171.2 | 19.5 |   |  
|   | bDGlcp | 92.4 | 82.1 | 74.1 | 70.2 | 71.9 | 61.4 |   |  
   
  | 
There is only one chemically distinct structure:
 
 
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Huang TT, Wages JM
New-to-nature sophorose analog: a potent inducer for gene expression in Trichoderma reesei
Enzyme and Microbial Technology 85 (2016) 
44-50
 
Starmerella bombicola ATCC 22214
 (previously named: Candida bombicola ATCC 22214)
(Ancestor NCBI TaxID 75736,
species name lookup)
 
Taxonomic group: fungi / Ascomycota 
(Phylum: Ascomycota)
 
The structure was elucidated in this paperNCBI PubMed ID: 26920480Publication DOI: 10.1016/j.enzmictec.2016.01.003Journal NLM ID: 8003761Correspondence: Huang TT <huan45

gmail.com>
Institutions: Panorama Research, Inc., Sunnyvale, CA, USA, Sophoro Biotechnologies, Sunnyvale, CA, USA
Controlled hydrolysis of lactonic sophorolipids from Starmerella bombicola yields a previously undescribed sophorose analog that potently induces cellulase in Trichoderma reesei Rut-C30. Acid treatment of natural sophorolipids results in a mixture of monoacetylated, deacetylated, and diacetylated sophorolipids in acidic and lactonic forms. Isolation of the active components of the mixture, followed by structure determination by MS and NMR, reveals a new chemical entity, in which the lactone ring has been opened at the C-1' rather than at the C-4″ position of the sophorose moiety. This sophorose ester is resistant to degradation by the host and is at least 28 times more powerful an inducer than sophorose in shake-flask culture. Even at low concentrations (0.05 mM), the chemically modified sophorolipid effectively induces cellulase. With further improvements, this highly enabling technology can potentially reduce the cost of enzymes produced in T. reesei and can facilitate the rapid deployment of enzyme plants to support the nascent cellulosic biofuels and biochemicals industries.
gene expression, fermentation, cellulase, Trichoderma, sophorolipid, inducer
Structure type: oligomer 
Location inside paper: fig. 1D, fig. 4
Compound class: glycolipid
Contained glycoepitopes: IEDB_140628,IEDB_142488,IEDB_146664,IEDB_983931,SB_192 
Methods: 13C NMR, 1H NMR, TLC, HSQC, HCl hydrolysis, HPLC/MS
Biological activity: significantly induces cellulase in Trichoderma reesei Rut-C30 (see Table 2)
Synthetic data: chemical
Comments, role: obtained by acid hydrolysis of crude mixture of harvested sophorolipids produced by S. bombicola ATCC 22214 (minor component) 
Related record ID(s): 42711, 42712, 42713
NCBI Taxonomy refs (TaxIDs): 75736
Show glycosyltransferases
 
There is only one chemically distinct structure:
 
 
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