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Chen YS, Chang HS, Cheng MJ, Chan HY, Wu MD, Hsieh SY, Wang HC, Chen IS
New chemical constituents from the endophytic fungus Xylariapapulis cultivated on Taiwanese Lepidagathisstenophylla
Records of Natural Products 10(6) (2016)
735-743
a-D-Glcp-(1-16)-Subst
Subst = 16-hydroxynorisopimar-7-en-4-ol = SMILES C[C@@]12[C@](CC=C3[C@]2([H])CC[C@](C)(C{16}CO)C3)([H]){4}[C@](C)(O)CCC1 |
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Xylaria papulis 09F0222
(Ancestor NCBI TaxID 498171,
species name lookup)
Taxonomic group: fungi / Ascomycota
(Phylum: Ascomycota)
Host organism: Lepidagathis
Organ / tissue: stem
The structure was elucidated in this paperJournal NLM ID: 101479886WWW link: http://acgpubs.org/article/records-of-natural-products/2016/6-november-december/new-chemical-constituents-from-the-endophytic-fungus-xylariapapulis-cultivated-on-taiwanese-lepidagathisstenophyllaPublisher: Turkey: ACG Publications
Correspondence: Chang HS <m635013

kmu.edu.tw>; Cheng MJ <hschang

kmu.edu.tw>; Chen IS <cmj

firdi.org.tw>
Institutions: Graduate Institute of Natural Products, College of Pharmacy, Kaohsiung Medical University, Kaohsiung, Taiwan, School of Pharmacy, College of Pharmacy, Kaohsiung Medical University, Kaohsiung, Taiwan, Bioresource Collection and Research Center, Food Industry Research and Development Institute, Hsinchu, Taiwan
The endophytic strain Xylaria papulis was originated from the stem of Taiwanese Lepidagathis stenophylla C. B. Clarke ex Hayata (Acanthaceae) growing in the Hengchun Peninsula of southern Taiwan. Bioassay-guided fractionation of an EtOAc -soluble fraction of the liquid fermentate of this strain resulted in the isolation of two new isopimarane-type diterpene glycosides compounds, i.e., xylapapusides A & B (1 & 2), along with five previously identified compounds, 3-7. The structures of 1 and 2 were elucidated by detailed spectroscopic analysis including 1H- and 13C-NMR, COSY, HSQC, HMBC, and HR-ESI-MS, while the structures of the known compounds 3-7 were deduced from comparison of their spectral data with those in the literature. The effects of some isolates on the inhibition of NO production in lipopolysaccharide-activated RAW 264.7 murine macrophages were evaluated. Xylapapuside A (1) showed most potent of NO inhibition with E maxvalue of 34.3 μM.
endophytic fungus, Xylaria papulis, Lepidagathis stenophylla, isopimarane-type diterpene glycoside
Structure type: monomer ; 477.2825 [M+Na]+
C
25H
42O
7Location inside paper: compound 1, xylapapuside A, sec. 2.4, Table 1 (1)
Contained glycoepitopes: IEDB_142488,IEDB_144998,IEDB_146664,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, IR, TLC, ESI-MS, extraction, optical rotation measurement, cell viability assay, HMBC, NOESY, MPLC, HSQC, HRESIMS, nitrite production assay, anti-inflammatory assays
Biological activity: At concentration range of 100 μM, compound 1 has NO in RAW 264.7 macrophages production induced value of 65.71±1.51% with mean maximum inhibitory effect of NO production of 34.29±1.51% and cell viability of 97.07±5.09%.
Comments, role: NMR temperature was not specificied
Related record ID(s): 42835, 42836
NCBI Taxonomy refs (TaxIDs): 498171
Show glycosyltransferases
NMR conditions: in CD3OD
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6 C7 C8 C9 C10 C11 C12 C13 C14 C15 C16 C17 C18 C19
16 aDGlcp 100.2 73.6 75.2 71.9 73.8 62.8
Subst 40.4 21.3 43.8 73.1 53.2 23.5 122.2 137.2 53.7 37.4 21.7 38.2 33.9 48.5 45.1 65.6 22.2 23.5 15.1
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6 H7 H8 H9 H10 H11 H12 H13 H14 H15 H16 H17 H18 H19
16 aDGlcp 4.76 3.38 3.62 3.27 3.57 3.67-3.80
Subst 1.07-1.81 1.34-1.61 1.34-1.77 - 1.43 1.89-2.15 5.37 - 1.74 - 1.34-1.61 1.25-1.61 - 1.92-1.96 1.50-1.61 3.51-3.84 0.81 1.20 0.85
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6 C7/H7 C8/H8 C9/H9 C10/H10 C11/H11 C12/H12 C13/H13 C14/H14 C15/H15 C16/H16 C17/H17 C18/H18 C19/H19
16 aDGlcp 100.2/4.76 73.6/3.38 75.2/3.62 71.9/3.27 73.8/3.57 62.8/3.67-3.80
Subst 40.4/1.07-1.81 21.3/1.34-1.61 43.8/1.34-1.77 53.2/1.43 23.5/1.89-2.15 122.2/5.37 53.7/1.74 21.7/1.34-1.61 38.2/1.25-1.61 48.5/1.92-1.96 45.1/1.50-1.61 65.6/3.51-3.84 22.2/0.81 23.5/1.20 15.1/0.85
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 | H7 | H8 | H9 | H10 | H11 | H12 | H13 | H14 | H15 | H16 | H17 | H18 | H19 |
16 | aDGlcp | 4.76 | 3.38 | 3.62 | 3.27 | 3.57 | 3.67 3.80 | |
| Subst | 1.07 1.81 | 1.34 1.61 | 1.34 1.77 |
| 1.43 | 1.89 2.15 | 5.37 |
| 1.74 |
| 1.34 1.61 | 1.25 1.61 |
| 1.92 1.96 | 1.50 1.61 | 3.51 3.84 | 0.81 | 1.20 | 0.85 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 | C7 | C8 | C9 | C10 | C11 | C12 | C13 | C14 | C15 | C16 | C17 | C18 | C19 |
16 | aDGlcp | 100.2 | 73.6 | 75.2 | 71.9 | 73.8 | 62.8 | |
| Subst | 40.4 | 21.3 | 43.8 | 73.1 | 53.2 | 23.5 | 122.2 | 137.2 | 53.7 | 37.4 | 21.7 | 38.2 | 33.9 | 48.5 | 45.1 | 65.6 | 22.2 | 23.5 | 15.1 |
|
There is only one chemically distinct structure:
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Chen YS, Chang HS, Cheng MJ, Chan HY, Wu MD, Hsieh SY, Wang HC, Chen IS
New chemical constituents from the endophytic fungus Xylariapapulis cultivated on Taiwanese Lepidagathisstenophylla
Records of Natural Products 10(6) (2016)
735-743
a-D-Manp-(1-16)-Subst
Subst = xylapapuside B aglycon = SMILES [H][C@]/12CC[C@](C)(C{16}CO)CC1=C\C[C@@]3(C){4}[C@@](C)(O)CCC[C@]23C |
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Xylaria papulis 09F0222
(Ancestor NCBI TaxID 498171,
species name lookup)
Taxonomic group: fungi / Ascomycota
(Phylum: Ascomycota)
Host organism: Lepidagathis
Organ / tissue: stem
The structure was elucidated in this paperJournal NLM ID: 101479886WWW link: http://acgpubs.org/article/records-of-natural-products/2016/6-november-december/new-chemical-constituents-from-the-endophytic-fungus-xylariapapulis-cultivated-on-taiwanese-lepidagathisstenophyllaPublisher: Turkey: ACG Publications
Correspondence: Chang HS <m635013

kmu.edu.tw>; Cheng MJ <hschang

kmu.edu.tw>; Chen IS <cmj

firdi.org.tw>
Institutions: Graduate Institute of Natural Products, College of Pharmacy, Kaohsiung Medical University, Kaohsiung, Taiwan, School of Pharmacy, College of Pharmacy, Kaohsiung Medical University, Kaohsiung, Taiwan, Bioresource Collection and Research Center, Food Industry Research and Development Institute, Hsinchu, Taiwan
The endophytic strain Xylaria papulis was originated from the stem of Taiwanese Lepidagathis stenophylla C. B. Clarke ex Hayata (Acanthaceae) growing in the Hengchun Peninsula of southern Taiwan. Bioassay-guided fractionation of an EtOAc -soluble fraction of the liquid fermentate of this strain resulted in the isolation of two new isopimarane-type diterpene glycosides compounds, i.e., xylapapusides A & B (1 & 2), along with five previously identified compounds, 3-7. The structures of 1 and 2 were elucidated by detailed spectroscopic analysis including 1H- and 13C-NMR, COSY, HSQC, HMBC, and HR-ESI-MS, while the structures of the known compounds 3-7 were deduced from comparison of their spectral data with those in the literature. The effects of some isolates on the inhibition of NO production in lipopolysaccharide-activated RAW 264.7 murine macrophages were evaluated. Xylapapuside A (1) showed most potent of NO inhibition with E maxvalue of 34.3 μM.
endophytic fungus, Xylaria papulis, Lepidagathis stenophylla, isopimarane-type diterpene glycoside
Structure type: monomer ; 477.2823 [M+Na]+
C
25H
42O
7Location inside paper: compound 2, xylapapuside B, sec. 2.5, Table 1 (2)
Contained glycoepitopes: IEDB_130701,IEDB_144983,IEDB_152206,IEDB_983930,SB_44,SB_67,SB_72
Methods: 13C NMR, 1H NMR, IR, TLC, ESI-MS, extraction, optical rotation measurement, cell viability assay, HMBC, NOESY, MPLC, HSQC, HRESIMS, nitrite production assay, anti-inflammatory assays
Biological activity: At concentration range of 100 μM, compound 2 has NO in RAW 264.7 macrophages production induced value of 88.74±0.73% with mean maximum inhibitory effect of NO production of 11.26±0.73% and cell viability of 67.84±4.42%.
Comments, role: NMR temperature was not specificied
Related record ID(s): 42834, 42836
NCBI Taxonomy refs (TaxIDs): 498171
Show glycosyltransferases
NMR conditions: in CD3OD
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6 C7 C8 C9 C10 C11 C12 C13 C14 C15 C16 C17 C18 C19
16 aDManp 101.7 72.3 72.7 68.7 74.7 63.0
Subst 40.5 19.1 42.0 72.0 50.5 23.5 122.2 137.1 52.7 36.4 21.3 38.3 34.1 48.6 45.3 65.2 22.2 30.8 15.0
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6 H7 H8 H9 H10 H11 H12 H13 H14 H15 H16 H17 H18 H19
16 aDManp 4.72 3.77 3.68 3.60 3.53 3.71-3.83
Subst 1.00-1.86 1.38-1.81 1.36-1.72 - 1.15-1.17 1.97-2.11 5.36 - 1.63-1.65 - 1.33-1.55 1.21-1.55 - 1.91-1.94 1.49-1.52 3.49-3.84 0.81 1.15 1.03
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6 C7/H7 C8/H8 C9/H9 C10/H10 C11/H11 C12/H12 C13/H13 C14/H14 C15/H15 C16/H16 C17/H17 C18/H18 C19/H19
16 aDManp 101.7/4.72 72.3/3.77 72.7/3.68 68.7/3.60 74.7/3.53 63.0/3.71-3.83
Subst 40.5/1.00-1.86 19.1/1.38-1.81 42.0/1.36-1.72 50.5/1.15-1.17 23.5/1.97-2.11 122.2/5.36 52.7/1.63-1.65 21.3/1.33-1.55 38.3/1.21-1.55 48.6/1.91-1.94 45.3/1.49-1.52 65.2/3.49-3.84 22.2/0.81 30.8/1.15 15.0/1.03
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 | H7 | H8 | H9 | H10 | H11 | H12 | H13 | H14 | H15 | H16 | H17 | H18 | H19 |
16 | aDManp | 4.72 | 3.77 | 3.68 | 3.60 | 3.53 | 3.71 3.83 | |
| Subst | 1.00 1.86 | 1.38 1.81 | 1.36 1.72 |
| 1.15 1.17 | 1.97 2.11 | 5.36 |
| 1.63 1.65 |
| 1.33 1.55 | 1.21 1.55 |
| 1.91 1.94 | 1.49 1.52 | 3.49 3.84 | 0.81 | 1.15 | 1.03 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 | C7 | C8 | C9 | C10 | C11 | C12 | C13 | C14 | C15 | C16 | C17 | C18 | C19 |
16 | aDManp | 101.7 | 72.3 | 72.7 | 68.7 | 74.7 | 63.0 | |
| Subst | 40.5 | 19.1 | 42.0 | 72.0 | 50.5 | 23.5 | 122.2 | 137.1 | 52.7 | 36.4 | 21.3 | 38.3 | 34.1 | 48.6 | 45.3 | 65.2 | 22.2 | 30.8 | 15.0 |
|
There is only one chemically distinct structure:
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Chen YS, Chang HS, Cheng MJ, Chan HY, Wu MD, Hsieh SY, Wang HC, Chen IS
New chemical constituents from the endophytic fungus Xylariapapulis cultivated on Taiwanese Lepidagathisstenophylla
Records of Natural Products 10(6) (2016)
735-743
a-D-Manp-(1-16)-Subst
Subst = 16-hydroxynorisopimar-7-en-4-ol = SMILES C[C@@]12[C@](CC=C3[C@]2([H])CC[C@](C)(C{16}CO)C3)([H]){4}[C@](C)(O)CCC1 |
Show graphically |
Xylaria papulis 09F0222
(Ancestor NCBI TaxID 498171,
species name lookup)
Taxonomic group: fungi / Ascomycota
(Phylum: Ascomycota)
Host organism: Lepidagathis
Organ / tissue: stem
The structure was elucidated in this paperJournal NLM ID: 101479886WWW link: http://acgpubs.org/article/records-of-natural-products/2016/6-november-december/new-chemical-constituents-from-the-endophytic-fungus-xylariapapulis-cultivated-on-taiwanese-lepidagathisstenophyllaPublisher: Turkey: ACG Publications
Correspondence: Chang HS <m635013

kmu.edu.tw>; Cheng MJ <hschang

kmu.edu.tw>; Chen IS <cmj

firdi.org.tw>
Institutions: Graduate Institute of Natural Products, College of Pharmacy, Kaohsiung Medical University, Kaohsiung, Taiwan, School of Pharmacy, College of Pharmacy, Kaohsiung Medical University, Kaohsiung, Taiwan, Bioresource Collection and Research Center, Food Industry Research and Development Institute, Hsinchu, Taiwan
The endophytic strain Xylaria papulis was originated from the stem of Taiwanese Lepidagathis stenophylla C. B. Clarke ex Hayata (Acanthaceae) growing in the Hengchun Peninsula of southern Taiwan. Bioassay-guided fractionation of an EtOAc -soluble fraction of the liquid fermentate of this strain resulted in the isolation of two new isopimarane-type diterpene glycosides compounds, i.e., xylapapusides A & B (1 & 2), along with five previously identified compounds, 3-7. The structures of 1 and 2 were elucidated by detailed spectroscopic analysis including 1H- and 13C-NMR, COSY, HSQC, HMBC, and HR-ESI-MS, while the structures of the known compounds 3-7 were deduced from comparison of their spectral data with those in the literature. The effects of some isolates on the inhibition of NO production in lipopolysaccharide-activated RAW 264.7 murine macrophages were evaluated. Xylapapuside A (1) showed most potent of NO inhibition with E maxvalue of 34.3 μM.
endophytic fungus, Xylaria papulis, Lepidagathis stenophylla, isopimarane-type diterpene glycoside
Structure type: monomer
Location inside paper: compound 3, elaeicolaside A, Table 1 (3)
Trivial name: elaeicolaside B
Compound class: glycoside, isopimarane diterpene glycoside
Contained glycoepitopes: IEDB_130701,IEDB_144983,IEDB_152206,IEDB_983930,SB_44,SB_67,SB_72
Methods: 13C NMR, 1H NMR, IR, TLC, ESI-MS, extraction, optical rotation measurement, cell viability assay, HMBC, NOESY, MPLC, HSQC, HRESIMS, nitrite production assay, anti-inflammatory assays
Biological activity: At concentration range of 100 μM, compound 3 has NO in RAW 264.7 macrophages production induced value of 78.53±0.45% with mean maximum inhibitory effect of NO production of 21.47±0.45% and cell viability of 96.95±4.18%.
Comments, role: Elaeicolaside B was identified by comparing their spectroscopic data with published literature values (see ref. [22])
Related record ID(s): 42834, 42835
NCBI Taxonomy refs (TaxIDs): 498171
Show glycosyltransferases
There is only one chemically distinct structure:
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Kim HS, Kim JY, Ryu HS, Park HG, Kim YO, Kang JS, Kim HM, Hong JT, Kim Y, Han SB
Induction of dendritic cell maturation by β-glucan isolated from Sparassis crispa
International Immunopharmacology 10(10) (2010)
1284-1294
Sparassis crispa
(NCBI TaxID 139825,
species name lookup)
Taxonomic group: fungi / Basidiomycota
(Phylum: Basidiomycota)
Organ / tissue: mycelium
NCBI PubMed ID: 20699131Publication DOI: 10.1016/j.intimp.2010.07.012Journal NLM ID: 100965259Publisher: Amsterdam; New York: Elsevier Science
Correspondence: Han SB <shan

chungbuk.ac.kr>
Institutions: College of Pharmacy and Medical Research Center (CICT), Chungbuk National University, Chungbuk, South Korea, Hanabiotech Ltd., Kyunggi, South Korea, Korea Research Institute of Bioscience and Biotechnology, Chungbuk, South Korea
Sparassis crispa is a medicinal mushroom containing high 6-branched 1,3-β-D-glucan (sparan) content, which exhibits immune-mediated antitumor activity. In the present study, we investigated the stimulating effect of sparan on phenotypic and functional maturation of dendritic cells (DCs). Phenotypic maturation was confirmed by the elevated expressions of CD40, CD80, CD86, and MHC-I/II molecules. Functional activation was proved by increased cytokine production of IL-12, IL-1β, TNF-α, and IFN-α/β, enhanced IL-2 production and proliferation of allogenic T cells, and decreased endocytosis. The role of toll-like receptor 4 (TLR4) as a membrane receptor of sparan was proved by the impaired maturation of DCs generated from bone marrow cells of tlr4-/- knock-out mice and TLR4-mutated C3H/HeJ mice, and by using anti-MD-2/TLR4 neutralizing antibody. Sparan increased phosphorylation of ERK, p38, and JNK, and enhanced nuclear translocation of NF-ΚB p50/p65 in DCs. These results indicate that sparan activates DCs via MAPK and NF-ΚB signaling pathways, which are signaling molecules downstream of TLR4.
polysaccharides, Toll-like receptor 4, dendritic cells, Sparassis crispa, Sparan
Structure type: structural motif or average structure ; 510000
Location inside paper: Introduction, paragraph 1
Trivial name: sparan
Compound class: O-polysaccharide, glucan
Contained glycoepitopes: IEDB_1397514,IEDB_141806,IEDB_142488,IEDB_146664,IEDB_153543,IEDB_158555,IEDB_161166,IEDB_241101,IEDB_558869,IEDB_857743,IEDB_983931,SB_192
Methods: Western blotting, extraction, cytokine production, endocytosis assay, lymphocyte proliferation assay, nitrite production assay
Biological activity: sparan increased the expression of MHC and co-stimulatory molecules in DCs, resulting in enhanced antigen presentation to T cells, and increased cytokine production by DCs; activated Th1 cells can produce IFN-γ and IL-2, which can activate antitumor effector cells, such as cytotoxic T cells and NK cells
Related record ID(s): 44007
NCBI Taxonomy refs (TaxIDs): 139825Reference(s) to other database(s): GTC:G83138WS
Show glycosyltransferases
There is only one chemically distinct structure:
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