Taxonomic group: fungi / Ascomycota
(Phylum: Ascomycota)
Organ / tissue: myceluim
The structure was elucidated in this paperNCBI PubMed ID: 26572406Publication DOI: 10.1016/j.carbpol.2015.09.088Journal NLM ID: 8307156Publisher: Elsevier
Correspondence: He L <kite006

126.com>
Institutions: Institute of Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China, The Key Laboratory of Biochemical Utilization of Zhejiang Province, Zhejiang Forestry Academy, Hangzhou, China
A neutral heteropolysaccharide (PCIPS2) was isolated and purified from mycelium of Paecilomyces cicadae, which was investigated to be mainly composed of D-mannose, L-rhamnose, 3-O-methyl-D-galactose, D-glucose and D-galactose with a molar ratio of 47.9:3.1:6.4:0.9:0.8. It had a backbone of 1,4-linked α-L-Rhap residues and 1,6-linked α-D-Manp residues with branches at O-3 of α-D-Manp residues. Its side chain was comprised of minor terminal β-D-glucose and 1,4-linked α-3-O-Me-D-Galp residues terminated by α-D-galactose. Furthermore, its chain information on the values of weight-average molar mass (Mw), root mean square radius ([Formula: see text]), hydrodynamic radius (Rh) and intrinsic viscosity ([η]) for PCIPS2 were analyzed to be 3.09 × 10(4)g/mol, 7.8 nm, 3.6 nm and 8.5 mL/g, respectively. The structural exponent α of 0.57 indicated that PCIPS2 existed as a flexible chain conformation with a coil-like structure in 0.1M NaNO3 at 25 °C. In terms of known theory for worm-like chains, the model parameters for PCIPS2 were as following: molar mass per unit contour length (ML) = 379 nm(-1), persistence length (q) = 0.74 nm and hydrodynamic diameter of cylinder (d) = 0.82 nm, which were further evidenced by atomic force microscopy (AFM).
heteropolysaccharide, AFM, Structural characterization, Chain conformation, Paecilomyces cicadae
Structure type: structural motif or average structure ; 30900
Location inside paper: fig. 5, PCIPS2, Table 2
Contained glycoepitopes: IEDB_130701,IEDB_136105,IEDB_136906,IEDB_137472,IEDB_140116,IEDB_141793,IEDB_141794,IEDB_141828,IEDB_142488,IEDB_144983,IEDB_144987,IEDB_146664,IEDB_151528,IEDB_152206,IEDB_153220,IEDB_153762,IEDB_153763,IEDB_190606,IEDB_225177,IEDB_76933,IEDB_885823,IEDB_983930,IEDB_983931,SB_192,SB_198,SB_31,SB_44,SB_67,SB_7,SB_72
Methods: 13C NMR, 1H NMR, GC-MS, GC, FTIR, viscosity measurement, acetylation, TOCSY, methylation analysis, reduction with NaBH4, HMBC, HMQC, COSY, AFM, TFA hydrolysis, SEC-MALLS-RI-VISC
Comments, role: 1H and 13C NMR data were removed by CSDB staff due to published (erroneous) chemical shifts incompatible with the structure.
3D data: conformation data
NCBI Taxonomy refs (TaxIDs): 218633
Show glycosyltransferases
NMR conditions: in D2O at 333 K
1H NMR data: present in publication with incorrect assignment
|
13C NMR data: present in publication with incorrect assignment
|
There is only one chemically distinct structure:
Taxonomic group: fungi / Basidiomycota
(Phylum: Basidiomycota)
Organ / tissue: Life stage: culture broth
NCBI PubMed ID: 32810532Publication DOI: 10.1016/j.ijbiomac.2020.08.112Journal NLM ID: 7909578Publisher: Butterworth-Heinemann
Correspondence: Hu C <Jiuczhou

163.com>; He L <kite006

126.com>
Institutions: Institute of Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China, Key Laboratory of Biological and Chemical Utilization of Zhejiang Forest Resources, Department of Forest Foods, Zhejiang Academy of Forestry, Hangzhou, China, Hangzhou Academy of Agricultural Sciences, Hangzhou, China, Institute of Horticulture, Zhejiang Academy of Agricultural Science, Hangzhou, China
Sanghuang is a well-known edible and medicinal fungus consumed in Asia for centuries. In the present study, a novel exopolysaccharide named as mannan (SSEPS2) was isolated from the liquid culture broth of Sanghuangporus sanghuang by using ethanol precipitation, anion-exchange chromatography, and size-exclusion chromatography, which was exclusively composed of D-mannose with the molecular weight 94300 g/mol. The structural analysis suggested that SSEPS2 consisted of 1,3-linked and 1,2-linked α-D-mannopyranose (Manp), with substitution at O-6 of 1,2-linked α-D-Manp by 1,6-linked α-D-Manp residues and terminal α-D-Manp residues. The exponent of α (0.58) indicated that SSEPS2 existed in a flexible chain conformation, with a coil-like structure in 0.1 M NaNO3 at 25 °C, which was further confirmed by the atomic force microscopy images and a three-dimensional molecular model. It exhibited potential antitumor activity against the growth of HepG2 (human hepatoma) and MCF-7 cell lines in vitro. The IC50 values for inhibiting HepG-2 cells and MCF-7 cells proliferation were 365 and 340 μg/mL, which showed its potential application in the development of anticancer therapeutics.
conformation, mannan, Sanghuangporus sanghuang
Structure type: structural motif or average structure ; 94300
Location inside paper: p. 3577, Fig. 6, p. 3574, Table 2
Trivial name: mannan SSEPS2
Compound class: EPS, polysaccharide, mannan
Contained glycoepitopes: IEDB_115576,IEDB_130701,IEDB_136104,IEDB_140116,IEDB_141111,IEDB_141793,IEDB_141828,IEDB_141830,IEDB_143632,IEDB_144983,IEDB_152206,IEDB_153220,IEDB_164174,IEDB_164175,IEDB_164176,IEDB_174840,IEDB_241100,IEDB_76933,IEDB_983930,SB_136,SB_196,SB_197,SB_198,SB_44,SB_67,SB_72
Methods: 13C NMR, 1H NMR, NMR-2D, methylation, IR, GC-MS, acid hydrolysis, molecular modeling, acetylation, methylation analysis, reduction, column chromatography, cell growth, dialysis, precipitation, carbazole-sulfuric acid assay, antitumor activity assay, Bradford method, evaporation, Sevag method, centrifugation, AFM, SEC-MALLS-RI-VISC
Biological activity: polysaccharide has antitumor activity against the growth of HepG2 andMCF-7 cell lines in vitro
3D data: molecular modeling
NCBI Taxonomy refs (TaxIDs): 1659845Reference(s) to other database(s): GTC:G29438QO
Show glycosyltransferases
NMR conditions: in D2O at 333 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3,2,2 aDManp 103.35-103.47 70.84 79.23-79.80 67.44-67.75 72.45-74.56 62.41
3,2,6,6 aDManp 103.35 71.23 71.83 68.22 74.47 62.41
3,2,6 aDManp 103.26 71.34 71.83 68.22 72.45 66.87
3,2 aDManp 99.49 79.99 71.52 68.21 72.45 66.87
3 aDManp 101.77 79.50 71.52 68.22 74.56 62.41
aDManp 103.35-103.47 70.84 79.23-79.80 67.44-67.75 72.45-74.56 62.41
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3,2,2 aDManp 4.95-5.03 4.13-4.14 3.82-3.86 3.69-3.73 3.69 3.65-3.80
3,2,6,6 aDManp 4.96 3.97 3.74 3.55 3.70 3.65-3.80
3,2,6 aDManp 5.05 3.96 3.74 3.60 3.67 3.74-3.93
3,2 aDManp 5.00 3.94 3.80 3.62 3.67 3.74-3.93
3 aDManp 5.20 4.02 3.81 3.57 3.74 3.65-3.80
aDManp 4.95-5.03 4.13-4.14 3.82-3.86 3.69-3.73 3.69 3.65-3.80
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3,2,2 aDManp 103.35-103.47/4.95-5.03 70.84/4.13-4.14 79.23-79.80/3.82-3.86 67.44-67.75/3.69-3.73 72.45-74.56/3.69 62.41/3.65-3.80
3,2,6,6 aDManp 103.35/4.96 71.23/3.97 71.83/3.74 68.22/3.55 74.47/3.70 62.41/3.65-3.80
3,2,6 aDManp 103.26/5.05 71.34/3.96 71.83/3.74 68.22/3.60 72.45/3.67 66.87/3.74-3.93
3,2 aDManp 99.49/5.00 79.99/3.94 71.52/3.80 68.21/3.62 72.45/3.67 66.87/3.74-3.93
3 aDManp 101.77/5.20 79.50/4.02 71.52/3.81 68.22/3.57 74.56/3.74 62.41/3.65-3.80
aDManp 103.35-103.47/4.95-5.03 70.84/4.13-4.14 79.23-79.80/3.82-3.86 67.44-67.75/3.69-3.73 72.45-74.56/3.69 62.41/3.65-3.80
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
3,2,2 | aDManp | 4.95 5.03 | 4.13 4.14 | 3.82 3.86 | 3.69 3.73 | 3.69 | 3.65 3.80 |
3,2,6,6 | aDManp | 4.96 | 3.97 | 3.74 | 3.55 | 3.70 | 3.65 3.80 |
3,2,6 | aDManp | 5.05 | 3.96 | 3.74 | 3.60 | 3.67 | 3.74 3.93 |
3,2 | aDManp | 5.00 | 3.94 | 3.80 | 3.62 | 3.67 | 3.74 3.93 |
3 | aDManp | 5.20 | 4.02 | 3.81 | 3.57 | 3.74 | 3.65 3.80 |
| aDManp | 4.95 5.03 | 4.13 4.14 | 3.82 3.86 | 3.69 3.73 | 3.69 | 3.65 3.80 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
3,2,2 | aDManp | 103.35 103.47 | 70.84 | 79.23 79.80 | 67.44 67.75 | 72.45 74.56 | 62.41 |
3,2,6,6 | aDManp | 103.35 | 71.23 | 71.83 | 68.22 | 74.47 | 62.41 |
3,2,6 | aDManp | 103.26 | 71.34 | 71.83 | 68.22 | 72.45 | 66.87 |
3,2 | aDManp | 99.49 | 79.99 | 71.52 | 68.21 | 72.45 | 66.87 |
3 | aDManp | 101.77 | 79.50 | 71.52 | 68.22 | 74.56 | 62.41 |
| aDManp | 103.35 103.47 | 70.84 | 79.23 79.80 | 67.44 67.75 | 72.45 74.56 | 62.41 |
|
There is only one chemically distinct structure:
Taxonomic group: fungi / Basidiomycota
(Phylum: Basidiomycota)
Organ / tissue: mycelium
The structure was elucidated in this paperNCBI PubMed ID: 32871118Publication DOI: 10.1016/j.ijbiomac.2020.08.202Journal NLM ID: 7909578Publisher: Butterworth-Heinemann
Correspondence: He L <kite006

126.com>
Institutions: Institute of Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China, Key Laboratory of Biological and Chemical Utilization of Zhejiang Forest Resources, Department of Forest Foods, Zhejiang Academy of Forestry, Hangzhou, China, Hangzhou Academy of Agricultural Sciences, Hangzhou, China, Institute of Horticulture, Zhejiang Academy of Agricultural Sciences, Hangzhou, China, Zhejiang Chinese Medical University, Hangzhou, China
A neutral polysaccharide (SSIPS1) was isolated and purified from cultured mycelia of Sanghuangporus sanghuang by DEAE Sepharose Fast Flow and Sephacryl S-100 columns. Basic monosaccharide composition indicated that SSIPS1 was mainly composed of D-glucose. The results of methylation and 2D-NMR analysis suggested that the glycosidic linkages of SSIPS1 were elucidated to consisted of 1,4-linked α-D-glucopyranose (Glcp) residues with two branched points at O-6. The two branches were composed of 1,4-linked α-D-Glcp terminated with α-D-Glcp, 1,4-linked α-D-Glcp and 1,4-linked β-Galp terminated by α-D-Glcp. Moreover, its chain conformation was revealed to present a flexible chain conformation in 0.1 NaNO3 with a hydrodynamic radius and radius of gyration of 3.26 and 6.45 nm by multi-angle laser light scattering, with a single chain of 0.559 nm observed by atomic force microscopy. Further, SSIPS1 exhibited a potential inhibitory activity against α-amylase and α-glucosidase, and it had hypoglycemic effects on in vitro insulin resistance of HepG2 cells as well.
structure, polysaccharide, AFM, hypoglycemic activity, Sanghuangporus sanghuang
Structure type: structural motif or average structure ; 23500
Location inside paper: p. 3310, Fig. 4, p. 3310, Table 2
Compound class: polysaccharide, galactoglucan
Contained glycoepitopes: IEDB_136044,IEDB_137472,IEDB_140629,IEDB_141794,IEDB_142487,IEDB_142488,IEDB_144998,IEDB_146664,IEDB_190606,IEDB_420417,IEDB_420418,IEDB_420421,IEDB_857742,IEDB_983931,SB_165,SB_166,SB_187,SB_192,SB_195,SB_6,SB_7,SB_88
Methods: 13C NMR, 1H NMR, NMR-2D, methylation, IR, GC-MS, acid hydrolysis, acetylation, methylation analysis, reduction, column chromatography, cell growth, dialysis, precipitation, carbazole-sulfuric acid assay, Bradford method, evaporation, Sevag method, centrifugation, AFM, hypoglycemic activity assay, SEC-MALLS-RI-VISC
Biological activity: polysaccharide exhibited a potential inhibitory activity against α-amylase and α-glucosidase, and had hypoglycemic effects on insulin resistance in HepG2 cells in vitro
NCBI Taxonomy refs (TaxIDs): 1659845Reference(s) to other database(s): GTC:G27508NP
Show glycosyltransferases
NMR conditions: in D2O at 333 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
4 aDGlcp 101.28 73.15 74.93 78.35 72.77 61.87
4,4,4,4 aDGlcp 101.28 73.15 74.93 78.35 72.77 61.87
4,4,4,6,4 aDGlcp 101.28 73.40 74.33 70.94 73.42 61.89
4,4,4,6 aDGlcp 100.19 73.40 74.93 78.35 71.97 61.89
4,4,4 aDGlcp 101.37 73.42 74.93 79.24 71.78 69.37
4,4,6,4,4 aDGlcp 101.28 73.40 74.33 70.94 73.42 61.89
4,4,6,4 bDGalp 105.96 74.41 74.87 79.24 76.11 62.34
4,4,6 aDGlcp 100.19 73.40 74.93 78.35 71.97 61.89
4,4 aDGlcp 101.37 73.42 74.93 79.24 71.78 69.37
aDGlcp 101.28 73.15 74.93 78.35 72.77 61.87
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
4 aDGlcp 5.32 3.56 3.89 3.57 3.77 3.70-3.78
4,4,4,4 aDGlcp 5.32 3.56 3.89 3.57 3.77 3.70-3.78
4,4,4,6,4 aDGlcp 5.32 3.52 3.63 3.34 3.70 3.70-3.78
4,4,4,6 aDGlcp 4.90 3.52 3.93 3.57 3.96 3.68-3.81
4,4,4 aDGlcp 5.28 3.58 3.90 3.55 3.83 3.82-3.86
4,4,6,4,4 aDGlcp 5.32 3.52 3.63 3.34 3.70 3.70-3.78
4,4,6,4 bDGalp 4.56 3.60 3.70 4.09 3.65 3.66-3.78
4,4,6 aDGlcp 4.90 3.52 3.93 3.57 3.96 3.68-3.81
4,4 aDGlcp 5.28 3.58 3.90 3.55 3.83 3.82-3.86
aDGlcp 5.32 3.56 3.89 3.57 3.77 3.70-3.78
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
4 aDGlcp 101.28/5.32 73.15/3.56 74.93/3.89 78.35/3.57 72.77/3.77 61.87/3.70-3.78
4,4,4,4 aDGlcp 101.28/5.32 73.15/3.56 74.93/3.89 78.35/3.57 72.77/3.77 61.87/3.70-3.78
4,4,4,6,4 aDGlcp 101.28/5.32 73.40/3.52 74.33/3.63 70.94/3.34 73.42/3.70 61.89/3.70-3.78
4,4,4,6 aDGlcp 100.19/4.90 73.40/3.52 74.93/3.93 78.35/3.57 71.97/3.96 61.89/3.68-3.81
4,4,4 aDGlcp 101.37/5.28 73.42/3.58 74.93/3.90 79.24/3.55 71.78/3.83 69.37/3.82-3.86
4,4,6,4,4 aDGlcp 101.28/5.32 73.40/3.52 74.33/3.63 70.94/3.34 73.42/3.70 61.89/3.70-3.78
4,4,6,4 bDGalp 105.96/4.56 74.41/3.60 74.87/3.70 79.24/4.09 76.11/3.65 62.34/3.66-3.78
4,4,6 aDGlcp 100.19/4.90 73.40/3.52 74.93/3.93 78.35/3.57 71.97/3.96 61.89/3.68-3.81
4,4 aDGlcp 101.37/5.28 73.42/3.58 74.93/3.90 79.24/3.55 71.78/3.83 69.37/3.82-3.86
aDGlcp 101.28/5.32 73.15/3.56 74.93/3.89 78.35/3.57 72.77/3.77 61.87/3.70-3.78
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
4 | aDGlcp | 5.32 | 3.56 | 3.89 | 3.57 | 3.77 | 3.70 3.78 |
4,4,4,4 | aDGlcp | 5.32 | 3.56 | 3.89 | 3.57 | 3.77 | 3.70 3.78 |
4,4,4,6,4 | aDGlcp | 5.32 | 3.52 | 3.63 | 3.34 | 3.70 | 3.70 3.78 |
4,4,4,6 | aDGlcp | 4.90 | 3.52 | 3.93 | 3.57 | 3.96 | 3.68 3.81 |
4,4,4 | aDGlcp | 5.28 | 3.58 | 3.90 | 3.55 | 3.83 | 3.82 3.86 |
4,4,6,4,4 | aDGlcp | 5.32 | 3.52 | 3.63 | 3.34 | 3.70 | 3.70 3.78 |
4,4,6,4 | bDGalp | 4.56 | 3.60 | 3.70 | 4.09 | 3.65 | 3.66 3.78 |
4,4,6 | aDGlcp | 4.90 | 3.52 | 3.93 | 3.57 | 3.96 | 3.68 3.81 |
4,4 | aDGlcp | 5.28 | 3.58 | 3.90 | 3.55 | 3.83 | 3.82 3.86 |
| aDGlcp | 5.32 | 3.56 | 3.89 | 3.57 | 3.77 | 3.70 3.78 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
4 | aDGlcp | 101.28 | 73.15 | 74.93 | 78.35 | 72.77 | 61.87 |
4,4,4,4 | aDGlcp | 101.28 | 73.15 | 74.93 | 78.35 | 72.77 | 61.87 |
4,4,4,6,4 | aDGlcp | 101.28 | 73.40 | 74.33 | 70.94 | 73.42 | 61.89 |
4,4,4,6 | aDGlcp | 100.19 | 73.40 | 74.93 | 78.35 | 71.97 | 61.89 |
4,4,4 | aDGlcp | 101.37 | 73.42 | 74.93 | 79.24 | 71.78 | 69.37 |
4,4,6,4,4 | aDGlcp | 101.28 | 73.40 | 74.33 | 70.94 | 73.42 | 61.89 |
4,4,6,4 | bDGalp | 105.96 | 74.41 | 74.87 | 79.24 | 76.11 | 62.34 |
4,4,6 | aDGlcp | 100.19 | 73.40 | 74.93 | 78.35 | 71.97 | 61.89 |
4,4 | aDGlcp | 101.37 | 73.42 | 74.93 | 79.24 | 71.78 | 69.37 |
| aDGlcp | 101.28 | 73.15 | 74.93 | 78.35 | 72.77 | 61.87 |
|
There is only one chemically distinct structure: