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Li X, Wang L, Wang Z
Structural characterization and antioxidant activity of polysaccharide from Hohenbuehelia serotina
International Journal of Biological Macromolecules 98 (2017)
59-66
Hohenbuehelia serotina
(previously named: Panellus serotinus, Panus serotinus, Pleurotus serotinus; later renamed to: Sarcomyxa serotina)
(NCBI TaxID 40488,
species name lookup)
Taxonomic group: fungi / Basidiomycota
(Phylum: Basidiomycota)
Organ / tissue: fruiting body
The structure was elucidated in this paperPublication DOI: 10.1016/j.ijbiomac.2016.12.089Journal NLM ID: 7909578Publisher: Butterworth-Heinemann
Correspondence: lixiaoyu

ysu.edu.cn
Institutions: School of Environmental and Chemical Engineering, Yanshan University, Qinhuangdao, China, School of Food Science and Engineering, Harbin Institute of Technology, Harbin, China, School of Environmental and Chemical Engineering, Yanshan University, Qinhuangdao 066004, PR China, School of Food Science and Engineering, Harbin Institute of Technology, Harbin 150090, PR China
Previous research found that the polysaccharides isolated from Hohenbuehelia serotina possessed various biological activities, such as antioxidant, immunomodulation and radioprotective effects. However, the structural information of H. serotina polysaccharides has not yet been reported. Therefore, based on the investigation of the antioxidative tracking, a novel polysaccharide named as NTHSP-A1 was isolated from H. serotina by ultrasonic-assistance extraction and anion-exchange and gel permeation chromatography approaches. Structural characterization revealed that NTHSP-A1 had an average molecular weight of 8.09 × 103 Da and composed of arabinose, mannose, glucose and galactose in a molar ratio of 4:16:28:11. The polysaccharide was semi-crystalline substance with multi-branching structure. The backbone of NTHSP-A1 was shown to contain →3,6)-α-D-Glcp-(1→, with branches substituted at C-3 of →2)-α-L-Arap-(1→, C-3 of α-D-Manp-(1→, and C-6 of →6)-β-D-Galp-(1→, respectively. This study provides a theoretical basis for the further research on the relationship between biological activity and structure of NTHSP-A1.
polysaccharide, Structural characterization, Antioxidant activity
Structure type: structural motif or average structure ; 809000
Location inside paper: NTHSP-A1, Table 2, p.64
Compound class: O-polysaccharide, arabinoglucan
Contained glycoepitopes: IEDB_142488,IEDB_144998,IEDB_146664,IEDB_158538,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, GC-MS, X-ray, GC, HPLC, acetylation, atomic force microscopy, methylation analysis, trifluoroacetic acid solvolysis, HPGPC, HMBC, HMQC, COSY, FT-IR, phenol-sulphuric acid method
Biological activity: NTHSP-A1 polysaccharide possesed remarkable inhibitory actions with the ABTS and hydroxyl IC50 values of 35.84 ± 0.24 and 95.08 ± 3.27 mg VCE/g polysaccharide, respectively (p < 0.01)
Comments, role: part of NTHSP-A1 polysaccharide complex stucture, which consists of repeating unit of successively linked [(ID 43227)x (ID 43228)a (ID 43229) (ID 43227)y (ID 43228)b] with x+y=2 and a+b=4. Published erroneous NMR chemical shifts of the O-methyl substituent were removed by CSDB staff.
Related record ID(s): 43227, 43228
NCBI Taxonomy refs (TaxIDs): 40488Reference(s) to other database(s): GTC:G83229GM
Show glycosyltransferases
NMR conditions: in D2O at 343 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3,2 Me
3 aLArap 102.7 78.3 69.0 68.2 69.2
aDGlcp 98.8 72.1 75.6 73.9 71.1 68.2
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3,2 Me
3 aLArap 5.3 3.9 4.1 3.7 3.7
aDGlcp 5.3 3.6 4.1 3.7 3.6 3.7
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3,2 Me
3 aLArap 102.7/5.3 78.3/3.9 69.0/4.1 68.2/3.7 69.2/3.7
aDGlcp 98.8/5.3 72.1/3.6 75.6/4.1 73.9/3.7 71.1/3.6 68.2/3.7
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
3,2 | Me | |
3 | aLArap | 5.3 | 3.9 | 4.1 | 3.7 | 3.7 | |
| aDGlcp | 5.3 | 3.6 | 4.1 | 3.7 | 3.6 | 3.7 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
3,2 | Me | |
3 | aLArap | 102.7 | 78.3 | 69.0 | 68.2 | 69.2 | |
| aDGlcp | 98.8 | 72.1 | 75.6 | 73.9 | 71.1 | 68.2 |
|
There is only one chemically distinct structure:
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Wu Y, Wang D
A new class of natural glycopeptides with sugar moiety-dependent antioxidant activities derived from Ganoderma lucidum fruiting bodies
Journal of Proteome Research 8(2) (2009)
436-442
a-L-Araf-(1-6)-+
|
-3)-b-D-Glcp-(1-3)-b-D-Glcp-(1-3)-b-D-Glcp-(1- |
Show graphically |
Ganoderma lucidum
(NCBI TaxID 5315,
species name lookup)
Taxonomic group: fungi / Basidiomycota
(Phylum: Basidiomycota)
Organ / tissue: fruiting body
The structure was elucidated in this paperNCBI PubMed ID: 18989955Publication DOI: 10.1021/pr800554wJournal NLM ID: 101128775Publisher: Washington, DC: American Chemical Society
Correspondence: yw2248

columbia.edu
Institutions: Department of Ophthalmology, Columbia University, New York, USA, Stanford Tumor Glycome Laboratory, Department of Genetics, Stanford University School of Medicine, Stanford, USA
A water-soluble glycopeptide (PGY), fractionated and purified from the aqueous extract of the fruiting bodies of Ganoderma lucidum via two-step dialysis, anion exchange, and gel permeation chromatography, was constituted of two moieties of carbohydrate and peptide. Carbohydrate characterization with component analysis, methylation analysis, periodate oxidation. Smith degradation, enzymic hydrolysis, and IR and NMR experiments demonstrated that the carbohydrate moiety possessed a backbone of approximately 33 (1-3)-linked β-D-glucopyranosyl residues and side chains, at positions 6, of single α-L-arabinofuranosyl residues for every three Glcp residues in the main chain. On the basis of the results of amino acid composition and trypsin digestion, the peptide moiety, shown to consist of Arg, Ser, Ala, and Gly in a ratio of 1:1:2:2, exhibited the sequence of Ser-Arg-[(Ala)2(Gly)2] and was O-attached to the carbohydrate moiety via Ser. To contribute toward our understanding of the structure-activity relationship, a series of expected derivatives generated from PGY by trypsin digestion, debranching, and NalO 4 oxidation following reduction experiments, including PTC, DB-PGY, and PPP, were obtained. All of them, as well as PGY and a reference compound (butylated hydroxytoluene, BHT), were evaluated with two conventional antioxidant testing systems of 1,1-diphenyl-2-picrylhydrazyl (DPPH) and superoxide radical scavenging and found to have their respective antioxidant activities in a concentration-dependent manner. Comparable radical-scavenging activities observed between PTC and PGY demonstrated that the removal of Ala and Gly in a peptide moiety did not result in the variation of biological functions of PGY. However, it was very interesting to note that the scavenging activity of PPP was higher for DPPH radicals, with an SC 50 value of 116.4 ± 5.1 μg/mL, and lower for superoxide radicals, with an SC 50 value of 205.2 ± 14.4 μg/mL, than that of PGY with corresponding SC 50 values of 133.5 ± 5.5 and 140.5 ± 7.7 μ/mL, and, moreover, DB-PGY displayed the weakest scavenging potency in the tested samples, indicating that the carbohydrate moiety, in particular the side chain of nonreducing end units of Araf residues as the functional region, played a vital role in the structure and antioxidant activity. In addition, compared with the SC 50 value of BHT, PGY showed lower DPPH radical-scavenging activity but possessed higher superoxide radical-quenching potency, suggesting that it could be presented as a possible new source of natural antioxidants.
structure, glycopeptide, relationship, Antioxidants, Ganoderma lucidum, functional regions
Structure type: structural motif or average structure ; n=11
Location inside paper: fig.7, 1, PGY
Aglycon: Ser-Arg-Ala2-Glu2
Compound class: O-polysaccharide, arabinoglucan
Contained glycoepitopes: IEDB_136907,IEDB_1397514,IEDB_142488,IEDB_146664,IEDB_153543,IEDB_158555,IEDB_161166,IEDB_558869,IEDB_857743,IEDB_983931,SB_192
Methods: 13C NMR, IR, GLC-MS, acid hydrolysis, GLC, Smith degradation, amino acid analysis, GPC, enzymatic digestion, extraction, periodate oxidation, optical rotation measurement, acetylation, reduction, isotopic labeling, HMBC, radical scavenging assay, ethanol precipitation, DEPT
Biological activity: the compound quenched superoxide radicals generated from the riboflavin-NBT-light system in a concentration-dependent manner; scavenging effects against DPPH and superoxide radicals represent a direct correlation on terminal α-L-Araf residues as the side chain in the carbohydrate moiety of PGY
Enzymes that release or process the structure: exo-(1-3)-β-D-glucanase, trypsin, α-L-arabinofuranosidase
Related record ID(s): 44077, 44079, 44080, 44081
NCBI Taxonomy refs (TaxIDs): 5315Reference(s) to other database(s): GTC:G04684WA
Show glycosyltransferases
NMR conditions: in D2O at 310(C) K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3,3,6 aLAraf 107.7 82.6 77.8 85.7 61.4
3,3 bDGlcp 103.8 73.7 84.1 69.8 77.0 66.8
3 bDGlcp 104.5 74.7 84.2 71.5 80.7 61.0
bDGlcp 104.5 74.7 84.2 71.5 80.7 61.0
1H NMR data:
missing...
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
3,3,6 | aLAraf | 107.7 | 82.6 | 77.8 | 85.7 | 61.4 | |
3,3 | bDGlcp | 103.8 | 73.7 | 84.1 | 69.8 | 77.0 | 66.8 |
3 | bDGlcp | 104.5 | 74.7 | 84.2 | 71.5 | 80.7 | 61.0 |
| bDGlcp | 104.5 | 74.7 | 84.2 | 71.5 | 80.7 | 61.0 |
|
There is only one chemically distinct structure:
Expand this record
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Wu Y, Wang D
A new class of natural glycopeptides with sugar moiety-dependent antioxidant activities derived from Ganoderma lucidum fruiting bodies
Journal of Proteome Research 8(2) (2009)
436-442
a-L-Araf-(1-6)-+
|
-3)-b-D-Glcp-(1-3)-b-D-Glcp-(1-3)-b-D-Glcp-(1- |
Show graphically |
Ganoderma lucidum
(NCBI TaxID 5315,
species name lookup)
Taxonomic group: fungi / Basidiomycota
(Phylum: Basidiomycota)
Organ / tissue: fruiting body
The structure was elucidated in this paperNCBI PubMed ID: 18989955Publication DOI: 10.1021/pr800554wJournal NLM ID: 101128775Publisher: Washington, DC: American Chemical Society
Correspondence: yw2248

columbia.edu
Institutions: Department of Ophthalmology, Columbia University, New York, USA, Stanford Tumor Glycome Laboratory, Department of Genetics, Stanford University School of Medicine, Stanford, USA
A water-soluble glycopeptide (PGY), fractionated and purified from the aqueous extract of the fruiting bodies of Ganoderma lucidum via two-step dialysis, anion exchange, and gel permeation chromatography, was constituted of two moieties of carbohydrate and peptide. Carbohydrate characterization with component analysis, methylation analysis, periodate oxidation. Smith degradation, enzymic hydrolysis, and IR and NMR experiments demonstrated that the carbohydrate moiety possessed a backbone of approximately 33 (1-3)-linked β-D-glucopyranosyl residues and side chains, at positions 6, of single α-L-arabinofuranosyl residues for every three Glcp residues in the main chain. On the basis of the results of amino acid composition and trypsin digestion, the peptide moiety, shown to consist of Arg, Ser, Ala, and Gly in a ratio of 1:1:2:2, exhibited the sequence of Ser-Arg-[(Ala)2(Gly)2] and was O-attached to the carbohydrate moiety via Ser. To contribute toward our understanding of the structure-activity relationship, a series of expected derivatives generated from PGY by trypsin digestion, debranching, and NalO 4 oxidation following reduction experiments, including PTC, DB-PGY, and PPP, were obtained. All of them, as well as PGY and a reference compound (butylated hydroxytoluene, BHT), were evaluated with two conventional antioxidant testing systems of 1,1-diphenyl-2-picrylhydrazyl (DPPH) and superoxide radical scavenging and found to have their respective antioxidant activities in a concentration-dependent manner. Comparable radical-scavenging activities observed between PTC and PGY demonstrated that the removal of Ala and Gly in a peptide moiety did not result in the variation of biological functions of PGY. However, it was very interesting to note that the scavenging activity of PPP was higher for DPPH radicals, with an SC 50 value of 116.4 ± 5.1 μg/mL, and lower for superoxide radicals, with an SC 50 value of 205.2 ± 14.4 μg/mL, than that of PGY with corresponding SC 50 values of 133.5 ± 5.5 and 140.5 ± 7.7 μ/mL, and, moreover, DB-PGY displayed the weakest scavenging potency in the tested samples, indicating that the carbohydrate moiety, in particular the side chain of nonreducing end units of Araf residues as the functional region, played a vital role in the structure and antioxidant activity. In addition, compared with the SC 50 value of BHT, PGY showed lower DPPH radical-scavenging activity but possessed higher superoxide radical-quenching potency, suggesting that it could be presented as a possible new source of natural antioxidants.
structure, glycopeptide, relationship, Antioxidants, Ganoderma lucidum, functional regions
Structure type: structural motif or average structure ; n=11
Location inside paper: fig.7, 3, PTC
Aglycon: Ser-Arg
Compound class: O-polysaccharide, arabinoglucan
Contained glycoepitopes: IEDB_136907,IEDB_1397514,IEDB_142488,IEDB_146664,IEDB_153543,IEDB_158555,IEDB_161166,IEDB_558869,IEDB_857743,IEDB_983931,SB_192
Methods: 13C NMR, IR, GLC-MS, acid hydrolysis, GLC, Smith degradation, amino acid analysis, GPC, enzymatic digestion, extraction, periodate oxidation, optical rotation measurement, acetylation, reduction, isotopic labeling, HMBC, radical scavenging assay, ethanol precipitation, DEPT
Biological activity: the compound quenched superoxide radicals generated from the riboflavin-NBT-light system in a concentration-dependent manner
Enzymes that release or process the structure: trypsin
Related record ID(s): 44077, 44078, 44079, 44081
NCBI Taxonomy refs (TaxIDs): 5315Reference(s) to other database(s): GTC:G04684WA
Show glycosyltransferases
There is only one chemically distinct structure:
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