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Nishimura H, Yamaguchi D, Watanabe T
Cerebrosides, extracellular glycolipids secreted by the selective lignin-degrading fungus Ceriporiopsis subvermispora
Chemistry and Physics of Lipids 203 (2017) 
1-11
 
Gelatoporia subvermispora ATCC90467
 (previously named: Ceriporiopsis subvermispora ATCC90467, Poria subvermispora ATCC90467)
(Ancestor NCBI TaxID 42742,
species name lookup)
 
Taxonomic group: fungi / Basidiomycota 
(Phylum: Basidiomycota)
Organ / tissue: mycelium 
The structure was elucidated in this paperNCBI PubMed ID: 28062355Publication DOI: 10.1016/j.chemphyslip.2016.12.006Journal NLM ID: 0067206Correspondence: Nishimura H <hiroshi_nishimura

rish.kyoto-u.ac.jp>; Nishimura H <hiroshi.nishimura

mb2.seikyou.ne.jp>
Institutions: Laboratory of Biomass Conversion, Research Institute for Sustainable Humanosphere (RISH), Kyoto University, Uji, Japan
Ceriporiopsis subvermispora is a selective white-rot fungus that degrades lignin at a site far from the hyphae and extracellular enzymes, without intensive damage to the cellulose. In selective ligninolysis, low molecular mass metabolites play a principal role and amphipathic substances are involved to control the degradation and transport of hydrophobic aromatic molecules, including lignin and lipids; however, secretion of the amphipathic substances by this fungus has not been well understood, except for alk(en)yl itaconates called ceriporic acids, which have a weak amphiphilicity. Herein, we report for the first time that the fungus secretes cerebrosides that are classified as glycosphingolipids. By using liquid chromatography electron spray ionization mass spectrometry (LC-ESI-MS) and nuclear magnetic resonance (NMR) spectroscopy coupled with stable isotope feeding experiments with 13C-glucose and 15N-ammonium sulfate, the cerebrosides were determined to be N-hydroxyoctadecanoyl-1-O-β-D-glucopyranosyl-4E,8E-sphingadienine, N-hydroxyoctadecanoyl-1-O-β-D-glucopyranosyl-4E,8Z-sphingadienine, and N-hydroxyoctadecanoyl-1-O-β-D-glucopyranosyl-9-methyl-4E,8E-sphingadienine. The cerebrosides are strong amphipathic substances and potential metabolites for regulating difference and symbiosis within the microbial community.
glycolipid, cerebroside, Basidiomycete, white-rot fungi
Structure type: monomer ; 726.5520 [M-H]-
C
41H
77NO
9Location inside paper: cerebroside B, Scheme 1 (cerebroside B), Fig. 3, 5
Compound class: glycosphingolipid, cerebroside
Contained glycoepitopes: IEDB_137339,IEDB_142488,IEDB_146664,IEDB_983931,SB_192,SB_5 
Methods: 13C NMR, 1H NMR, GC-MS, TLC, ESI-MS, HPLC, CID-MS, LC-MS, HMBC, COSY, HSQC, HRMS, LC/IT-TOF-MS 
Related record ID(s): 43291, 43292
NCBI Taxonomy refs (TaxIDs): 42742
Show glycosyltransferases
 
There is only one chemically distinct structure:
 
 
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Nishimura H, Yamaguchi D, Watanabe T
Cerebrosides, extracellular glycolipids secreted by the selective lignin-degrading fungus Ceriporiopsis subvermispora
Chemistry and Physics of Lipids 203 (2017) 
1-11
 
| 
  2HOPam-(1-2)-+
               |
b-D-Glcp-(1-1)-SphdC18  
 xXSphdC18 = 4E,8E-sphingadienine-C18 | 
Show graphically | 
Gelatoporia subvermispora ATCC90467
 (previously named: Ceriporiopsis subvermispora ATCC90467, Poria subvermispora ATCC90467)
(Ancestor NCBI TaxID 42742,
species name lookup)
 
Taxonomic group: fungi / Basidiomycota 
(Phylum: Basidiomycota)
Organ / tissue: mycelium 
The structure was elucidated in this paperNCBI PubMed ID: 28062355Publication DOI: 10.1016/j.chemphyslip.2016.12.006Journal NLM ID: 0067206Correspondence: Nishimura H <hiroshi_nishimura

rish.kyoto-u.ac.jp>; Nishimura H <hiroshi.nishimura

mb2.seikyou.ne.jp>
Institutions: Laboratory of Biomass Conversion, Research Institute for Sustainable Humanosphere (RISH), Kyoto University, Uji, Japan
Ceriporiopsis subvermispora is a selective white-rot fungus that degrades lignin at a site far from the hyphae and extracellular enzymes, without intensive damage to the cellulose. In selective ligninolysis, low molecular mass metabolites play a principal role and amphipathic substances are involved to control the degradation and transport of hydrophobic aromatic molecules, including lignin and lipids; however, secretion of the amphipathic substances by this fungus has not been well understood, except for alk(en)yl itaconates called ceriporic acids, which have a weak amphiphilicity. Herein, we report for the first time that the fungus secretes cerebrosides that are classified as glycosphingolipids. By using liquid chromatography electron spray ionization mass spectrometry (LC-ESI-MS) and nuclear magnetic resonance (NMR) spectroscopy coupled with stable isotope feeding experiments with 13C-glucose and 15N-ammonium sulfate, the cerebrosides were determined to be N-hydroxyoctadecanoyl-1-O-β-D-glucopyranosyl-4E,8E-sphingadienine, N-hydroxyoctadecanoyl-1-O-β-D-glucopyranosyl-4E,8Z-sphingadienine, and N-hydroxyoctadecanoyl-1-O-β-D-glucopyranosyl-9-methyl-4E,8E-sphingadienine. The cerebrosides are strong amphipathic substances and potential metabolites for regulating difference and symbiosis within the microbial community.
glycolipid, cerebroside, Basidiomycete, white-rot fungi
Structure type: monomer ; 712.5360 [M-H]-
C
40H
75NO
9Location inside paper: cerebroside A1, Scheme 1 (cerebroside A1), Fig. 2, 4, Table 1
Compound class: glycosphingolipid, cerebroside
Contained glycoepitopes: IEDB_137339,IEDB_142488,IEDB_146664,IEDB_983931,SB_192,SB_5 
Methods: 13C NMR, 1H NMR, GC-MS, TLC, ESI-MS, HPLC, CID-MS, LC-MS, HMBC, COSY, HSQC, HRMS, LC/IT-TOF-MS 
Related record ID(s): 43290, 43292
NCBI Taxonomy refs (TaxIDs): 42742
Show glycosyltransferases
 
NMR conditions: in CD3OD at 295 K      
[as TSV]
13C NMR data:
Linkage	Residue	C1	C2	C3	C4	C5	C6	C7	C8	C9	C10	C11	C12	C13	C14	C15	C16	C17	C18
1	bDGlcp	104.9	75.0	77.9	71.6	78.1	62.7
2	l?2HOPam	174.2	73.1	36.0	30.8	30.8	30.8	30.8	30.8	30.8	30.8	30.8	30.8	30.8	30.8	24.2	14.5
	xXSphdC18	69.8	54.7	72.9	134.5	131.3	33.7	33.5	132.0	130.8	33.5	?	?	?	?	?	?	?	?
1H NMR data:
Linkage	Residue	H1	H2	H3	H4	H5	H6	H7	H8	H9	H10	H11	H12	H13	H14	H15	H16	H17	H18
1	bDGlcp	4.24	3.16	3.33	3.25	3.25	3.65-3.84
2	l?2HOPam	-	3.96	1.54-1.68	1.27	1.27	1.27	1.27	1.27	1.27	1.27	1.27	1.27	1.27	1.27	1.87	0.88
	xXSphdC18	3.69-4.09	3.97	4.12	5.71	5.46	1.96	2.05	5.41	5.42	2.05	?	?	?	?	?	?	?	?
1H/13C HSQC data:
Linkage	Residue	C1/H1	C2/H2	C3/H3	C4/H4	C5/H5	C6/H6	C7/H7	C8/H8	C9/H9	C10/H10	C11/H11	C12/H12	C13/H13	C14/H14	C15/H15	C16/H16	C17/H17	C18/H18
1	bDGlcp	104.9/4.24	75.0/3.16	77.9/3.33	71.6/3.25	78.1/3.25	62.7/3.65-3.84
2	l?2HOPam		73.1/3.96	36.0/1.54-1.68	30.8/1.27	30.8/1.27	30.8/1.27	30.8/1.27	30.8/1.27	30.8/1.27	30.8/1.27	30.8/1.27	30.8/1.27	30.8/1.27	30.8/1.27	24.2/1.87	14.5/0.88
	xXSphdC18	69.8/3.69-4.09	54.7/3.97	72.9/4.12	134.5/5.71	131.3/5.46	33.7/1.96	33.5/2.05	132.0/5.41	130.8/5.42	33.5/2.05	?/?	?/?	?/?	?/?	?/?	?/?	?/?	?/?
1H NMR data:
 | Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 | H7 | H8 | H9 | H10 | H11 | H12 | H13 | H14 | H15 | H16 | H17 | H18 |  
| 1 | bDGlcp | 4.24 | 3.16 | 3.33 | 3.25 | 3.25 | 3.65 3.84 |   |  
| 2 | l?2HOPam | 
  | 3.96 | 1.54 1.68 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.87 | 0.88 |   |  
|   | xXSphdC18 | 3.69 4.09 | 3.97 | 4.12 | 5.71 | 5.46 | 1.96 | 2.05 | 5.41 | 5.42 | 2.05 | ? | ? | ? | ? | ? | ? | ? | ? |  
   
  | 
13C NMR data:
 | Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 | C7 | C8 | C9 | C10 | C11 | C12 | C13 | C14 | C15 | C16 | C17 | C18 |  
| 1 | bDGlcp | 104.9 | 75.0 | 77.9 | 71.6 | 78.1 | 62.7 |   |  
| 2 | l?2HOPam | 174.2 | 73.1 | 36.0 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 24.2 | 14.5 |   |  
|   | xXSphdC18 | 69.8 | 54.7 | 72.9 | 134.5 | 131.3 | 33.7 | 33.5 | 132.0 | 130.8 | 33.5 | ? | ? | ? | ? | ? | ? | ? | ? |  
   
  | 
  The spectrum also has 8 signals at unknown positions (not plotted). | 
There is only one chemically distinct structure:
 
 
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Nishimura H, Yamaguchi D, Watanabe T
Cerebrosides, extracellular glycolipids secreted by the selective lignin-degrading fungus Ceriporiopsis subvermispora
Chemistry and Physics of Lipids 203 (2017) 
1-11
 
| 
  2HOPam-(1-2)-+
               |
b-D-Glcp-(1-1)-Subst  
 Subst = (4E,8Z)-2-aminononadeca-4,8-diene-1,3-diol = SMILES CCCCCCCCCC/C=C\CC/C=C/{3}C(O){2}C(N){1}CO | 
Show graphically | 
Gelatoporia subvermispora ATCC90467
 (previously named: Ceriporiopsis subvermispora ATCC90467, Poria subvermispora ATCC90467)
(Ancestor NCBI TaxID 42742,
species name lookup)
 
Taxonomic group: fungi / Basidiomycota 
(Phylum: Basidiomycota)
Organ / tissue: mycelium 
The structure was elucidated in this paperNCBI PubMed ID: 28062355Publication DOI: 10.1016/j.chemphyslip.2016.12.006Journal NLM ID: 0067206Correspondence: Nishimura H <hiroshi_nishimura

rish.kyoto-u.ac.jp>; Nishimura H <hiroshi.nishimura

mb2.seikyou.ne.jp>
Institutions: Laboratory of Biomass Conversion, Research Institute for Sustainable Humanosphere (RISH), Kyoto University, Uji, Japan
Ceriporiopsis subvermispora is a selective white-rot fungus that degrades lignin at a site far from the hyphae and extracellular enzymes, without intensive damage to the cellulose. In selective ligninolysis, low molecular mass metabolites play a principal role and amphipathic substances are involved to control the degradation and transport of hydrophobic aromatic molecules, including lignin and lipids; however, secretion of the amphipathic substances by this fungus has not been well understood, except for alk(en)yl itaconates called ceriporic acids, which have a weak amphiphilicity. Herein, we report for the first time that the fungus secretes cerebrosides that are classified as glycosphingolipids. By using liquid chromatography electron spray ionization mass spectrometry (LC-ESI-MS) and nuclear magnetic resonance (NMR) spectroscopy coupled with stable isotope feeding experiments with 13C-glucose and 15N-ammonium sulfate, the cerebrosides were determined to be N-hydroxyoctadecanoyl-1-O-β-D-glucopyranosyl-4E,8E-sphingadienine, N-hydroxyoctadecanoyl-1-O-β-D-glucopyranosyl-4E,8Z-sphingadienine, and N-hydroxyoctadecanoyl-1-O-β-D-glucopyranosyl-9-methyl-4E,8E-sphingadienine. The cerebrosides are strong amphipathic substances and potential metabolites for regulating difference and symbiosis within the microbial community.
glycolipid, cerebroside, Basidiomycete, white-rot fungi
Structure type: monomer ; 712.5364 [M-H]-
C
40H
75NO
9Location inside paper: cerebroside A2, Scheme 1 (cerebroside A2), Table 1
Compound class: glycosphingolipid, cerebroside
Contained glycoepitopes: IEDB_142488,IEDB_146664,IEDB_983931,SB_192 
Methods: 13C NMR, 1H NMR, GC-MS, TLC, ESI-MS, HPLC, CID-MS, LC-MS, HMBC, COSY, HSQC, HRMS, LC/IT-TOF-MS 
Related record ID(s): 43290, 43291
NCBI Taxonomy refs (TaxIDs): 42742
Show glycosyltransferases
 
NMR conditions: in CD3OD at 295 K      
[as TSV]
13C NMR data:
Linkage	Residue	C1	C2	C3	C4	C5	C6	C7	C8	C9	C10	C11	C12	C13	C14	C15	C16
1	bDGlcp	104.9	75.0	77.9	71.6	78.1	62.7
2	l?2HOPam	174.2	73.1	36.0	30.8	30.8	30.8	30.8	30.8	30.8	30.8	30.8	30.8	30.8	30.8	24.2	14.5
	Subst	69.8	54.7	72.9	134.5	131.3	33.7	27.9-28.2	131.3	130.2	27.9-28.2
1H NMR data:
Linkage	Residue	H1	H2	H3	H4	H5	H6	H7	H8	H9	H10	H11	H12	H13	H14	H15	H16
1	bDGlcp	4.24	3.16	3.33	3.25	3.25	3.65-3.84
2	l?2HOPam	-	3.96	1.54-1.68	1.27	1.27	1.27	1.27	1.27	1.27	1.27	1.27	1.27	1.27	1.27	1.87	0.88
	Subst	3.69-4.09	3.97	4.12	5.71	5.46	1.96	2.02-2.10	5.35	5.35	2.02-2.10
1H/13C HSQC data:
Linkage	Residue	C1/H1	C2/H2	C3/H3	C4/H4	C5/H5	C6/H6	C7/H7	C8/H8	C9/H9	C10/H10	C11/H11	C12/H12	C13/H13	C14/H14	C15/H15	C16/H16
1	bDGlcp	104.9/4.24	75.0/3.16	77.9/3.33	71.6/3.25	78.1/3.25	62.7/3.65-3.84
2	l?2HOPam		73.1/3.96	36.0/1.54-1.68	30.8/1.27	30.8/1.27	30.8/1.27	30.8/1.27	30.8/1.27	30.8/1.27	30.8/1.27	30.8/1.27	30.8/1.27	30.8/1.27	30.8/1.27	24.2/1.87	14.5/0.88
	Subst	69.8/3.69-4.09	54.7/3.97	72.9/4.12	134.5/5.71	131.3/5.46	33.7/1.96	27.9-28.2/2.02-2.10	131.3/5.35	130.2/5.35	27.9-28.2/2.02-2.10
1H NMR data:
 | Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 | H7 | H8 | H9 | H10 | H11 | H12 | H13 | H14 | H15 | H16 |  
| 1 | bDGlcp | 4.24 | 3.16 | 3.33 | 3.25 | 3.25 | 3.65 3.84 |   |  
| 2 | l?2HOPam | 
  | 3.96 | 1.54 1.68 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.87 | 0.88 |  
|   | Subst | 3.69 4.09 | 3.97 | 4.12 | 5.71 | 5.46 | 1.96 | 2.02 2.10 | 5.35 | 5.35 | 2.02 2.10 |   |  
   
  | 
13C NMR data:
 | Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 | C7 | C8 | C9 | C10 | C11 | C12 | C13 | C14 | C15 | C16 |  
| 1 | bDGlcp | 104.9 | 75.0 | 77.9 | 71.6 | 78.1 | 62.7 |   |  
| 2 | l?2HOPam | 174.2 | 73.1 | 36.0 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 24.2 | 14.5 |  
|   | Subst | 69.8 | 54.7 | 72.9 | 134.5 | 131.3 | 33.7 | 27.9 28.2 | 131.3 | 130.2 | 27.9 28.2 |   |  
   
  | 
There is only one chemically distinct structure:
 
 
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