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Nishimura H, Yamaguchi D, Watanabe T
Cerebrosides, extracellular glycolipids secreted by the selective lignin-degrading fungus Ceriporiopsis subvermispora
Chemistry and Physics of Lipids 203 (2017)
1-11
Gelatoporia subvermispora ATCC90467
(previously named: Ceriporiopsis subvermispora ATCC90467, Poria subvermispora ATCC90467)
(Ancestor NCBI TaxID 42742,
species name lookup)
Taxonomic group: fungi / Basidiomycota
(Phylum: Basidiomycota)
Organ / tissue: mycelium
The structure was elucidated in this paperNCBI PubMed ID: 28062355Publication DOI: 10.1016/j.chemphyslip.2016.12.006Journal NLM ID: 0067206Correspondence: Nishimura H <hiroshi_nishimura

rish.kyoto-u.ac.jp>; Nishimura H <hiroshi.nishimura

mb2.seikyou.ne.jp>
Institutions: Laboratory of Biomass Conversion, Research Institute for Sustainable Humanosphere (RISH), Kyoto University, Uji, Japan
Ceriporiopsis subvermispora is a selective white-rot fungus that degrades lignin at a site far from the hyphae and extracellular enzymes, without intensive damage to the cellulose. In selective ligninolysis, low molecular mass metabolites play a principal role and amphipathic substances are involved to control the degradation and transport of hydrophobic aromatic molecules, including lignin and lipids; however, secretion of the amphipathic substances by this fungus has not been well understood, except for alk(en)yl itaconates called ceriporic acids, which have a weak amphiphilicity. Herein, we report for the first time that the fungus secretes cerebrosides that are classified as glycosphingolipids. By using liquid chromatography electron spray ionization mass spectrometry (LC-ESI-MS) and nuclear magnetic resonance (NMR) spectroscopy coupled with stable isotope feeding experiments with 13C-glucose and 15N-ammonium sulfate, the cerebrosides were determined to be N-hydroxyoctadecanoyl-1-O-β-D-glucopyranosyl-4E,8E-sphingadienine, N-hydroxyoctadecanoyl-1-O-β-D-glucopyranosyl-4E,8Z-sphingadienine, and N-hydroxyoctadecanoyl-1-O-β-D-glucopyranosyl-9-methyl-4E,8E-sphingadienine. The cerebrosides are strong amphipathic substances and potential metabolites for regulating difference and symbiosis within the microbial community.
glycolipid, cerebroside, Basidiomycete, white-rot fungi
Structure type: monomer ; 726.5520 [M-H]-
C
41H
77NO
9Location inside paper: cerebroside B, Scheme 1 (cerebroside B), Fig. 3, 5
Compound class: glycosphingolipid, cerebroside
Contained glycoepitopes: IEDB_137339,IEDB_142488,IEDB_146664,IEDB_983931,SB_192,SB_5
Methods: 13C NMR, 1H NMR, GC-MS, TLC, ESI-MS, HPLC, CID-MS, LC-MS, HMBC, COSY, HSQC, HRMS, LC/IT-TOF-MS
Related record ID(s): 43291, 43292
NCBI Taxonomy refs (TaxIDs): 42742
Show glycosyltransferases
There is only one chemically distinct structure:
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Nishimura H, Yamaguchi D, Watanabe T
Cerebrosides, extracellular glycolipids secreted by the selective lignin-degrading fungus Ceriporiopsis subvermispora
Chemistry and Physics of Lipids 203 (2017)
1-11
2HOPam-(1-2)-+
|
b-D-Glcp-(1-1)-SphdC18
xXSphdC18 = 4E,8E-sphingadienine-C18 |
Show graphically |
Gelatoporia subvermispora ATCC90467
(previously named: Ceriporiopsis subvermispora ATCC90467, Poria subvermispora ATCC90467)
(Ancestor NCBI TaxID 42742,
species name lookup)
Taxonomic group: fungi / Basidiomycota
(Phylum: Basidiomycota)
Organ / tissue: mycelium
The structure was elucidated in this paperNCBI PubMed ID: 28062355Publication DOI: 10.1016/j.chemphyslip.2016.12.006Journal NLM ID: 0067206Correspondence: Nishimura H <hiroshi_nishimura

rish.kyoto-u.ac.jp>; Nishimura H <hiroshi.nishimura

mb2.seikyou.ne.jp>
Institutions: Laboratory of Biomass Conversion, Research Institute for Sustainable Humanosphere (RISH), Kyoto University, Uji, Japan
Ceriporiopsis subvermispora is a selective white-rot fungus that degrades lignin at a site far from the hyphae and extracellular enzymes, without intensive damage to the cellulose. In selective ligninolysis, low molecular mass metabolites play a principal role and amphipathic substances are involved to control the degradation and transport of hydrophobic aromatic molecules, including lignin and lipids; however, secretion of the amphipathic substances by this fungus has not been well understood, except for alk(en)yl itaconates called ceriporic acids, which have a weak amphiphilicity. Herein, we report for the first time that the fungus secretes cerebrosides that are classified as glycosphingolipids. By using liquid chromatography electron spray ionization mass spectrometry (LC-ESI-MS) and nuclear magnetic resonance (NMR) spectroscopy coupled with stable isotope feeding experiments with 13C-glucose and 15N-ammonium sulfate, the cerebrosides were determined to be N-hydroxyoctadecanoyl-1-O-β-D-glucopyranosyl-4E,8E-sphingadienine, N-hydroxyoctadecanoyl-1-O-β-D-glucopyranosyl-4E,8Z-sphingadienine, and N-hydroxyoctadecanoyl-1-O-β-D-glucopyranosyl-9-methyl-4E,8E-sphingadienine. The cerebrosides are strong amphipathic substances and potential metabolites for regulating difference and symbiosis within the microbial community.
glycolipid, cerebroside, Basidiomycete, white-rot fungi
Structure type: monomer ; 712.5360 [M-H]-
C
40H
75NO
9Location inside paper: cerebroside A1, Scheme 1 (cerebroside A1), Fig. 2, 4, Table 1
Compound class: glycosphingolipid, cerebroside
Contained glycoepitopes: IEDB_137339,IEDB_142488,IEDB_146664,IEDB_983931,SB_192,SB_5
Methods: 13C NMR, 1H NMR, GC-MS, TLC, ESI-MS, HPLC, CID-MS, LC-MS, HMBC, COSY, HSQC, HRMS, LC/IT-TOF-MS
Related record ID(s): 43290, 43292
NCBI Taxonomy refs (TaxIDs): 42742
Show glycosyltransferases
NMR conditions: in CD3OD at 295 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6 C7 C8 C9 C10 C11 C12 C13 C14 C15 C16 C17 C18
1 bDGlcp 104.9 75.0 77.9 71.6 78.1 62.7
2 l?2HOPam 174.2 73.1 36.0 30.8 30.8 30.8 30.8 30.8 30.8 30.8 30.8 30.8 30.8 30.8 24.2 14.5
xXSphdC18 69.8 54.7 72.9 134.5 131.3 33.7 33.5 132.0 130.8 33.5 ? ? ? ? ? ? ? ?
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6 H7 H8 H9 H10 H11 H12 H13 H14 H15 H16 H17 H18
1 bDGlcp 4.24 3.16 3.33 3.25 3.25 3.65-3.84
2 l?2HOPam - 3.96 1.54-1.68 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.87 0.88
xXSphdC18 3.69-4.09 3.97 4.12 5.71 5.46 1.96 2.05 5.41 5.42 2.05 ? ? ? ? ? ? ? ?
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6 C7/H7 C8/H8 C9/H9 C10/H10 C11/H11 C12/H12 C13/H13 C14/H14 C15/H15 C16/H16 C17/H17 C18/H18
1 bDGlcp 104.9/4.24 75.0/3.16 77.9/3.33 71.6/3.25 78.1/3.25 62.7/3.65-3.84
2 l?2HOPam 73.1/3.96 36.0/1.54-1.68 30.8/1.27 30.8/1.27 30.8/1.27 30.8/1.27 30.8/1.27 30.8/1.27 30.8/1.27 30.8/1.27 30.8/1.27 30.8/1.27 30.8/1.27 24.2/1.87 14.5/0.88
xXSphdC18 69.8/3.69-4.09 54.7/3.97 72.9/4.12 134.5/5.71 131.3/5.46 33.7/1.96 33.5/2.05 132.0/5.41 130.8/5.42 33.5/2.05 ?/? ?/? ?/? ?/? ?/? ?/? ?/? ?/?
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 | H7 | H8 | H9 | H10 | H11 | H12 | H13 | H14 | H15 | H16 | H17 | H18 |
1 | bDGlcp | 4.24 | 3.16 | 3.33 | 3.25 | 3.25 | 3.65 3.84 | |
2 | l?2HOPam |
| 3.96 | 1.54 1.68 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.87 | 0.88 | |
| xXSphdC18 | 3.69 4.09 | 3.97 | 4.12 | 5.71 | 5.46 | 1.96 | 2.05 | 5.41 | 5.42 | 2.05 | ? | ? | ? | ? | ? | ? | ? | ? |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 | C7 | C8 | C9 | C10 | C11 | C12 | C13 | C14 | C15 | C16 | C17 | C18 |
1 | bDGlcp | 104.9 | 75.0 | 77.9 | 71.6 | 78.1 | 62.7 | |
2 | l?2HOPam | 174.2 | 73.1 | 36.0 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 24.2 | 14.5 | |
| xXSphdC18 | 69.8 | 54.7 | 72.9 | 134.5 | 131.3 | 33.7 | 33.5 | 132.0 | 130.8 | 33.5 | ? | ? | ? | ? | ? | ? | ? | ? |
|
 The spectrum also has 8 signals at unknown positions (not plotted). |
There is only one chemically distinct structure:
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Nishimura H, Yamaguchi D, Watanabe T
Cerebrosides, extracellular glycolipids secreted by the selective lignin-degrading fungus Ceriporiopsis subvermispora
Chemistry and Physics of Lipids 203 (2017)
1-11
2HOPam-(1-2)-+
|
b-D-Glcp-(1-1)-Subst
Subst = (4E,8Z)-2-aminononadeca-4,8-diene-1,3-diol = SMILES CCCCCCCCCC/C=C\CC/C=C/{3}C(O){2}C(N){1}CO |
Show graphically |
Gelatoporia subvermispora ATCC90467
(previously named: Ceriporiopsis subvermispora ATCC90467, Poria subvermispora ATCC90467)
(Ancestor NCBI TaxID 42742,
species name lookup)
Taxonomic group: fungi / Basidiomycota
(Phylum: Basidiomycota)
Organ / tissue: mycelium
The structure was elucidated in this paperNCBI PubMed ID: 28062355Publication DOI: 10.1016/j.chemphyslip.2016.12.006Journal NLM ID: 0067206Correspondence: Nishimura H <hiroshi_nishimura

rish.kyoto-u.ac.jp>; Nishimura H <hiroshi.nishimura

mb2.seikyou.ne.jp>
Institutions: Laboratory of Biomass Conversion, Research Institute for Sustainable Humanosphere (RISH), Kyoto University, Uji, Japan
Ceriporiopsis subvermispora is a selective white-rot fungus that degrades lignin at a site far from the hyphae and extracellular enzymes, without intensive damage to the cellulose. In selective ligninolysis, low molecular mass metabolites play a principal role and amphipathic substances are involved to control the degradation and transport of hydrophobic aromatic molecules, including lignin and lipids; however, secretion of the amphipathic substances by this fungus has not been well understood, except for alk(en)yl itaconates called ceriporic acids, which have a weak amphiphilicity. Herein, we report for the first time that the fungus secretes cerebrosides that are classified as glycosphingolipids. By using liquid chromatography electron spray ionization mass spectrometry (LC-ESI-MS) and nuclear magnetic resonance (NMR) spectroscopy coupled with stable isotope feeding experiments with 13C-glucose and 15N-ammonium sulfate, the cerebrosides were determined to be N-hydroxyoctadecanoyl-1-O-β-D-glucopyranosyl-4E,8E-sphingadienine, N-hydroxyoctadecanoyl-1-O-β-D-glucopyranosyl-4E,8Z-sphingadienine, and N-hydroxyoctadecanoyl-1-O-β-D-glucopyranosyl-9-methyl-4E,8E-sphingadienine. The cerebrosides are strong amphipathic substances and potential metabolites for regulating difference and symbiosis within the microbial community.
glycolipid, cerebroside, Basidiomycete, white-rot fungi
Structure type: monomer ; 712.5364 [M-H]-
C
40H
75NO
9Location inside paper: cerebroside A2, Scheme 1 (cerebroside A2), Table 1
Compound class: glycosphingolipid, cerebroside
Contained glycoepitopes: IEDB_142488,IEDB_146664,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, GC-MS, TLC, ESI-MS, HPLC, CID-MS, LC-MS, HMBC, COSY, HSQC, HRMS, LC/IT-TOF-MS
Related record ID(s): 43290, 43291
NCBI Taxonomy refs (TaxIDs): 42742
Show glycosyltransferases
NMR conditions: in CD3OD at 295 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6 C7 C8 C9 C10 C11 C12 C13 C14 C15 C16
1 bDGlcp 104.9 75.0 77.9 71.6 78.1 62.7
2 l?2HOPam 174.2 73.1 36.0 30.8 30.8 30.8 30.8 30.8 30.8 30.8 30.8 30.8 30.8 30.8 24.2 14.5
Subst 69.8 54.7 72.9 134.5 131.3 33.7 27.9-28.2 131.3 130.2 27.9-28.2
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6 H7 H8 H9 H10 H11 H12 H13 H14 H15 H16
1 bDGlcp 4.24 3.16 3.33 3.25 3.25 3.65-3.84
2 l?2HOPam - 3.96 1.54-1.68 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.87 0.88
Subst 3.69-4.09 3.97 4.12 5.71 5.46 1.96 2.02-2.10 5.35 5.35 2.02-2.10
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6 C7/H7 C8/H8 C9/H9 C10/H10 C11/H11 C12/H12 C13/H13 C14/H14 C15/H15 C16/H16
1 bDGlcp 104.9/4.24 75.0/3.16 77.9/3.33 71.6/3.25 78.1/3.25 62.7/3.65-3.84
2 l?2HOPam 73.1/3.96 36.0/1.54-1.68 30.8/1.27 30.8/1.27 30.8/1.27 30.8/1.27 30.8/1.27 30.8/1.27 30.8/1.27 30.8/1.27 30.8/1.27 30.8/1.27 30.8/1.27 24.2/1.87 14.5/0.88
Subst 69.8/3.69-4.09 54.7/3.97 72.9/4.12 134.5/5.71 131.3/5.46 33.7/1.96 27.9-28.2/2.02-2.10 131.3/5.35 130.2/5.35 27.9-28.2/2.02-2.10
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 | H7 | H8 | H9 | H10 | H11 | H12 | H13 | H14 | H15 | H16 |
1 | bDGlcp | 4.24 | 3.16 | 3.33 | 3.25 | 3.25 | 3.65 3.84 | |
2 | l?2HOPam |
| 3.96 | 1.54 1.68 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.27 | 1.87 | 0.88 |
| Subst | 3.69 4.09 | 3.97 | 4.12 | 5.71 | 5.46 | 1.96 | 2.02 2.10 | 5.35 | 5.35 | 2.02 2.10 | |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 | C7 | C8 | C9 | C10 | C11 | C12 | C13 | C14 | C15 | C16 |
1 | bDGlcp | 104.9 | 75.0 | 77.9 | 71.6 | 78.1 | 62.7 | |
2 | l?2HOPam | 174.2 | 73.1 | 36.0 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 30.8 | 24.2 | 14.5 |
| Subst | 69.8 | 54.7 | 72.9 | 134.5 | 131.3 | 33.7 | 27.9 28.2 | 131.3 | 130.2 | 27.9 28.2 | |
|
There is only one chemically distinct structure:
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