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Maina NH, Virkki L, Pynnönen H, Maaheimo H, Tenkanen M
Structural analysis of enzyme-resistant isomaltooligosaccharides reveals the elongation of α-(1-3)-linked branches in Weissella confusa dextran
Biomacromolecules 12(2) (2011)
409-418
Weissella confusa VTT E-90392
(previously named: Weissella confusa DSM 20194, OLD: Weissella confusa NCDO 1975)
(Ancestor NCBI TaxID 1583,
species name lookup)
Taxonomic group: bacteria / Firmicutes
(Phylum: Firmicutes)
The structure was elucidated in this paperPublication DOI: 10.1021/bm1011536Journal NLM ID: 100892849Publisher: Washington, DC: American Chemical Society
Correspondence: Maina NH <henry.maina

helsinki.fi>
Institutions: Department of Food and Environmental Sciences, University of Helsinki, Helsinki, Finland, VTT Technical Research Centre of Finland, Espoo, Finland
Weissella confusa VTT E-90392 is an efficient producer of a dextran that is mainly composed of α-(1→6)-linked d-glucosyl units and very few α-(1→3) branch linkages. A mixture of the Chaetomium erraticum endodextranase and the Aspergillus niger α-glucosidase was used to hydrolyze W. confusa dextran to glucose and a set of enzyme-resistant isomaltooligosaccharides. Two of the oligosaccharides (tetra- and hexasaccharide) were isolated in pure form and their structures elucidated. The tetrasaccharide had a nonreducing end terminal α-(1→3)-linked glucosyl unit (α-D-Glcp-(1→3)-α-D-Glcp-(1→6)-α-D-Glcp-(1→6)-α-D-Glc), whereas the hexasaccharide had an α-(1→3)-linked isomaltosyl side group (α-D-Glcp-(1→6)[α-D-Glcp-(1→6)-α-D-Glcp-(1→3)]-α-D-Glcp-(1→6)-α-D-Glcp-(1→6)-α-D-Glc). A mixture of two isomeric oligosaccharides was also obtained in the pentasaccharide fraction, which were identified as (α-D-Glcp-(1→6)-α-D-Glcp-(1→3)-α-D-Glcp-(1→6)-α-D-Glcp-(1→6)-α-D-Glc) and (α-D-Glcp-(1→6)[α-D-Glcp-(1→3)]-α-D-Glcp-(1→6)-α-D-Glcp-(1→6)-α-D-Glc). The structures of the oligosaccharides indicated that W. confusa dextran contains both terminal and elongated α-(1→3)-branches. This is the first report evidencing the presence of elongated branches in W. confusa dextran. The 1H and 13C NMR spectroscopic data on the enzyme-resistant isomaltooligosaccharides with α-(1→3)-linked glucosyl and isomaltosyl groups are published here for the first time.
Weissella confusa, isomaltooligosaccharide
Structure type: oligomer ; 689 [M+Na]+
Location inside paper: structure BIM4, fig. 3, fig. 5, Table 1S
Compound class: isomaltooligosaccharide
Contained glycoepitopes: IEDB_142488,IEDB_144998,IEDB_146664,IEDB_158538,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, TLC, ESI-MS, HPLC, GPC, HPAEC-PAD, TOCSY, methylation analysis, DQF-COSY, HMBC
Synthetic data: enzymatic
Comments, role: 1H NMR is referenced to acetone at 2.225, 13C NMR is referenced to acetone at 31.55.
Related record ID(s): 43626, 43627, 43628
NCBI Taxonomy refs (TaxIDs): 1583Reference(s) to other database(s): GTC:G43097FM
Show glycosyltransferases
NMR conditions: in D2O at 296 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
6,6,3 aDGlcp 100.5 72.8 74.2 70.6 73.0 61.5
6,6 aDGlcp 99.1 73.0 81.1 70.8 72.9 61.5
6 aDGlcp 99.1 72.8 74.6 70.8 71.4 66.5
aDGlcp 97.5 75.4 77.3 70.8 75.6 67.0
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
6,6,3 aDGlcp 5.35 3.57 3.75 3.45 4.02 3.75-3.85
6,6 aDGlcp 4.97 3.66 3.85 3.65 3.74 3.75-3.85
6 aDGlcp 4.97 3.58 3.73 3.54 3.93 3.75
aDGlcp 5.24 3.54 3.71 3.51 4.02 3.71
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
6,6,3 aDGlcp 100.5/5.35 72.8/3.57 74.2/3.75 70.6/3.45 73.0/4.02 61.5/3.75-3.85
6,6 aDGlcp 99.1/4.97 73.0/3.66 81.1/3.85 70.8/3.65 72.9/3.74 61.5/3.75-3.85
6 aDGlcp 99.1/4.97 72.8/3.58 74.6/3.73 70.8/3.54 71.4/3.93 66.5/3.75
aDGlcp 97.5/5.24 75.4/3.54 77.3/3.71 70.8/3.51 75.6/4.02 67.0/3.71
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
6,6,3 | aDGlcp | 5.35 | 3.57 | 3.75 | 3.45 | 4.02 | 3.75 3.85 |
6,6 | aDGlcp | 4.97 | 3.66 | 3.85 | 3.65 | 3.74 | 3.75 3.85 |
6 | aDGlcp | 4.97 | 3.58 | 3.73 | 3.54 | 3.93 | 3.75 |
| aDGlcp | 5.24 | 3.54 | 3.71 | 3.51 | 4.02 | 3.71 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
6,6,3 | aDGlcp | 100.5 | 72.8 | 74.2 | 70.6 | 73.0 | 61.5 |
6,6 | aDGlcp | 99.1 | 73.0 | 81.1 | 70.8 | 72.9 | 61.5 |
6 | aDGlcp | 99.1 | 72.8 | 74.6 | 70.8 | 71.4 | 66.5 |
| aDGlcp | 97.5 | 75.4 | 77.3 | 70.8 | 75.6 | 67.0 |
|
There is only one chemically distinct structure:
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Maina NH, Virkki L, Pynnönen H, Maaheimo H, Tenkanen M
Structural analysis of enzyme-resistant isomaltooligosaccharides reveals the elongation of α-(1-3)-linked branches in Weissella confusa dextran
Biomacromolecules 12(2) (2011)
409-418
a-D-Glcp-(1-6)-+
|
a-D-Glcp-(1-3)-a-D-Glcp-(1-6)-a-D-Glcp-(1-6)-a-D-Glcp |
Show graphically |
Weissella confusa VTT E-90392
(previously named: Weissella confusa DSM 20194, OLD: Weissella confusa NCDO 1975)
(Ancestor NCBI TaxID 1583,
species name lookup)
Taxonomic group: bacteria / Firmicutes
(Phylum: Firmicutes)
The structure was elucidated in this paperPublication DOI: 10.1021/bm1011536Journal NLM ID: 100892849Publisher: Washington, DC: American Chemical Society
Correspondence: Maina NH <henry.maina

helsinki.fi>
Institutions: Department of Food and Environmental Sciences, University of Helsinki, Helsinki, Finland, VTT Technical Research Centre of Finland, Espoo, Finland
Weissella confusa VTT E-90392 is an efficient producer of a dextran that is mainly composed of α-(1→6)-linked d-glucosyl units and very few α-(1→3) branch linkages. A mixture of the Chaetomium erraticum endodextranase and the Aspergillus niger α-glucosidase was used to hydrolyze W. confusa dextran to glucose and a set of enzyme-resistant isomaltooligosaccharides. Two of the oligosaccharides (tetra- and hexasaccharide) were isolated in pure form and their structures elucidated. The tetrasaccharide had a nonreducing end terminal α-(1→3)-linked glucosyl unit (α-D-Glcp-(1→3)-α-D-Glcp-(1→6)-α-D-Glcp-(1→6)-α-D-Glc), whereas the hexasaccharide had an α-(1→3)-linked isomaltosyl side group (α-D-Glcp-(1→6)[α-D-Glcp-(1→6)-α-D-Glcp-(1→3)]-α-D-Glcp-(1→6)-α-D-Glcp-(1→6)-α-D-Glc). A mixture of two isomeric oligosaccharides was also obtained in the pentasaccharide fraction, which were identified as (α-D-Glcp-(1→6)-α-D-Glcp-(1→3)-α-D-Glcp-(1→6)-α-D-Glcp-(1→6)-α-D-Glc) and (α-D-Glcp-(1→6)[α-D-Glcp-(1→3)]-α-D-Glcp-(1→6)-α-D-Glcp-(1→6)-α-D-Glc). The structures of the oligosaccharides indicated that W. confusa dextran contains both terminal and elongated α-(1→3)-branches. This is the first report evidencing the presence of elongated branches in W. confusa dextran. The 1H and 13C NMR spectroscopic data on the enzyme-resistant isomaltooligosaccharides with α-(1→3)-linked glucosyl and isomaltosyl groups are published here for the first time.
Weissella confusa, isomaltooligosaccharide
Structure type: oligomer ; 851 [M+Na]+
Location inside paper: structure BIM5-1, fig. 3, fig. 5
Compound class: isomaltooligosaccharide
Contained glycoepitopes: IEDB_142488,IEDB_144998,IEDB_146664,IEDB_158538,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, TLC, ESI-MS, HPLC, GPC, HPAEC-PAD, TOCSY, methylation analysis, DQF-COSY, HMBC
Synthetic data: enzymatic
Comments, role: 1H NMR is referenced to acetone at 2.225, 13C NMR is referenced to acetone at 31.55.
Related record ID(s): 43625, 43627, 43628
NCBI Taxonomy refs (TaxIDs): 1583Reference(s) to other database(s): GTC:G09251OF
Show glycosyltransferases
NMR conditions: in D2O at 296 K
1H NMR data: present in publication
|
13C NMR data: present in publication
|
There is only one chemically distinct structure:
Expand this record
Collapse this record
Maina NH, Virkki L, Pynnönen H, Maaheimo H, Tenkanen M
Structural analysis of enzyme-resistant isomaltooligosaccharides reveals the elongation of α-(1-3)-linked branches in Weissella confusa dextran
Biomacromolecules 12(2) (2011)
409-418
a-D-Glcp-(1-6)-a-D-Glcp-(1-3)-a-D-Glcp-(1-6)-a-D-Glcp-(1-6)-a-D-Glcp |
Show graphically |
Weissella confusa VTT E-90392
(previously named: Weissella confusa DSM 20194, OLD: Weissella confusa NCDO 1975)
(Ancestor NCBI TaxID 1583,
species name lookup)
Taxonomic group: bacteria / Firmicutes
(Phylum: Firmicutes)
The structure was elucidated in this paperPublication DOI: 10.1021/bm1011536Journal NLM ID: 100892849Publisher: Washington, DC: American Chemical Society
Correspondence: Maina NH <henry.maina

helsinki.fi>
Institutions: Department of Food and Environmental Sciences, University of Helsinki, Helsinki, Finland, VTT Technical Research Centre of Finland, Espoo, Finland
Weissella confusa VTT E-90392 is an efficient producer of a dextran that is mainly composed of α-(1→6)-linked d-glucosyl units and very few α-(1→3) branch linkages. A mixture of the Chaetomium erraticum endodextranase and the Aspergillus niger α-glucosidase was used to hydrolyze W. confusa dextran to glucose and a set of enzyme-resistant isomaltooligosaccharides. Two of the oligosaccharides (tetra- and hexasaccharide) were isolated in pure form and their structures elucidated. The tetrasaccharide had a nonreducing end terminal α-(1→3)-linked glucosyl unit (α-D-Glcp-(1→3)-α-D-Glcp-(1→6)-α-D-Glcp-(1→6)-α-D-Glc), whereas the hexasaccharide had an α-(1→3)-linked isomaltosyl side group (α-D-Glcp-(1→6)[α-D-Glcp-(1→6)-α-D-Glcp-(1→3)]-α-D-Glcp-(1→6)-α-D-Glcp-(1→6)-α-D-Glc). A mixture of two isomeric oligosaccharides was also obtained in the pentasaccharide fraction, which were identified as (α-D-Glcp-(1→6)-α-D-Glcp-(1→3)-α-D-Glcp-(1→6)-α-D-Glcp-(1→6)-α-D-Glc) and (α-D-Glcp-(1→6)[α-D-Glcp-(1→3)]-α-D-Glcp-(1→6)-α-D-Glcp-(1→6)-α-D-Glc). The structures of the oligosaccharides indicated that W. confusa dextran contains both terminal and elongated α-(1→3)-branches. This is the first report evidencing the presence of elongated branches in W. confusa dextran. The 1H and 13C NMR spectroscopic data on the enzyme-resistant isomaltooligosaccharides with α-(1→3)-linked glucosyl and isomaltosyl groups are published here for the first time.
Weissella confusa, isomaltooligosaccharide
Structure type: oligomer ; 851 [M+Na]+
Location inside paper: structure BIM5-2, fig. 3, fig. 5,Table 1S
Compound class: isomaltooligosaccharide
Contained glycoepitopes: IEDB_142488,IEDB_144998,IEDB_146664,IEDB_158538,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, TLC, ESI-MS, HPLC, GPC, HPAEC-PAD, TOCSY, methylation analysis, DQF-COSY, HMBC
Synthetic data: enzymatic
Comments, role: 1H NMR is referenced to acetone at 2.225, 13C NMR is referenced to acetone at 31.55.
Related record ID(s): 43625, 43626, 43628
NCBI Taxonomy refs (TaxIDs): 1583Reference(s) to other database(s): GTC:G78993IV
Show glycosyltransferases
NMR conditions: in D2O at 296 K
1H NMR data: present in publication
|
13C NMR data: present in publication
|
There is only one chemically distinct structure:
Expand this record
Collapse this record
Maina NH, Virkki L, Pynnönen H, Maaheimo H, Tenkanen M
Structural analysis of enzyme-resistant isomaltooligosaccharides reveals the elongation of α-(1-3)-linked branches in Weissella confusa dextran
Biomacromolecules 12(2) (2011)
409-418
a-D-Glcp-(1-6)-+
|
a-D-Glcp-(1-6)-a-D-Glcp-(1-3)-a-D-Glcp-(1-6)-a-D-Glcp-(1-6)-a-D-Glcp |
Show graphically |
Weissella confusa VTT E-90392
(previously named: Weissella confusa DSM 20194, OLD: Weissella confusa NCDO 1975)
(Ancestor NCBI TaxID 1583,
species name lookup)
Taxonomic group: bacteria / Firmicutes
(Phylum: Firmicutes)
The structure was elucidated in this paperPublication DOI: 10.1021/bm1011536Journal NLM ID: 100892849Publisher: Washington, DC: American Chemical Society
Correspondence: Maina NH <henry.maina

helsinki.fi>
Institutions: Department of Food and Environmental Sciences, University of Helsinki, Helsinki, Finland, VTT Technical Research Centre of Finland, Espoo, Finland
Weissella confusa VTT E-90392 is an efficient producer of a dextran that is mainly composed of α-(1→6)-linked d-glucosyl units and very few α-(1→3) branch linkages. A mixture of the Chaetomium erraticum endodextranase and the Aspergillus niger α-glucosidase was used to hydrolyze W. confusa dextran to glucose and a set of enzyme-resistant isomaltooligosaccharides. Two of the oligosaccharides (tetra- and hexasaccharide) were isolated in pure form and their structures elucidated. The tetrasaccharide had a nonreducing end terminal α-(1→3)-linked glucosyl unit (α-D-Glcp-(1→3)-α-D-Glcp-(1→6)-α-D-Glcp-(1→6)-α-D-Glc), whereas the hexasaccharide had an α-(1→3)-linked isomaltosyl side group (α-D-Glcp-(1→6)[α-D-Glcp-(1→6)-α-D-Glcp-(1→3)]-α-D-Glcp-(1→6)-α-D-Glcp-(1→6)-α-D-Glc). A mixture of two isomeric oligosaccharides was also obtained in the pentasaccharide fraction, which were identified as (α-D-Glcp-(1→6)-α-D-Glcp-(1→3)-α-D-Glcp-(1→6)-α-D-Glcp-(1→6)-α-D-Glc) and (α-D-Glcp-(1→6)[α-D-Glcp-(1→3)]-α-D-Glcp-(1→6)-α-D-Glcp-(1→6)-α-D-Glc). The structures of the oligosaccharides indicated that W. confusa dextran contains both terminal and elongated α-(1→3)-branches. This is the first report evidencing the presence of elongated branches in W. confusa dextran. The 1H and 13C NMR spectroscopic data on the enzyme-resistant isomaltooligosaccharides with α-(1→3)-linked glucosyl and isomaltosyl groups are published here for the first time.
Weissella confusa, isomaltooligosaccharide
Structure type: oligomer ; 1013 [M+Na]+
Location inside paper: structure BIM6, fig. 3, fig. 5, Table 2S
Compound class: isomaltooligosaccharide
Contained glycoepitopes: IEDB_142488,IEDB_144998,IEDB_146664,IEDB_158538,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, TLC, ESI-MS, HPLC, GPC, HPAEC-PAD, TOCSY, methylation analysis, DQF-COSY, HMBC
Synthetic data: enzymatic
Comments, role: 1H NMR is referenced to acetone at 2.225, 13C NMR is referenced to acetone at 31.55.
Related record ID(s): 43625, 43626, 43627
NCBI Taxonomy refs (TaxIDs): 1583Reference(s) to other database(s): GTC:G11640MV
Show glycosyltransferases
NMR conditions: in D2O at 296 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
6,6,3,6 aDGlcp 99.1 72.9 74.4 70.7 73.2 61.6
6,6,3 aDGlcp 100.9 72.9 74.4 70.6 71.6 66.5
6,6,6 aDGlcp 99.1 72.9 74.4 70.7 73.2 61.6
6,6 aDGlcp 99.0 71.4 82.3 71.3 71.2 66.7
6 aDGlcp 99.3 72.8 74.8 ? ? 66.7
aDGlcp 97.5 75.4 77.3 70.8 75.6 66.9
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
6,6,3,6 aDGlcp 4.96 3.55 3.72 3.42 3.73 3.85
6,6,3 aDGlcp 5.32 3.59 3.73 3.56 4.20 3.68
6,6,6 aDGlcp 4.96 3.55 3.72 3.42 3.73 3.85
6,6 aDGlcp 4.99 3.68 3.82 3.77 3.93 ?
6 aDGlcp 4.99 3.59 3.73 3.54 ? ?
aDGlcp 5.24 3.54 3.71 3.52 4.02 3.71
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
6,6,3,6 aDGlcp 99.1/4.96 72.9/3.55 74.4/3.72 70.7/3.42 73.2/3.73 61.6/3.85
6,6,3 aDGlcp 100.9/5.32 72.9/3.59 74.4/3.73 70.6/3.56 71.6/4.20 66.5/3.68
6,6,6 aDGlcp 99.1/4.96 72.9/3.55 74.4/3.72 70.7/3.42 73.2/3.73 61.6/3.85
6,6 aDGlcp 99.0/4.99 71.4/3.68 82.3/3.82 71.3/3.77 71.2/3.93 66.7/?
6 aDGlcp 99.3/4.99 72.8/3.59 74.8/3.73 ?/3.54 ?/? 66.7/?
aDGlcp 97.5/5.24 75.4/3.54 77.3/3.71 70.8/3.52 75.6/4.02 66.9/3.71
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
6,6,3,6 | aDGlcp | 4.96 | 3.55 | 3.72 | 3.42 | 3.73 | 3.85 |
6,6,3 | aDGlcp | 5.32 | 3.59 | 3.73 | 3.56 | 4.20 | 3.68 |
6,6,6 | aDGlcp | 4.96 | 3.55 | 3.72 | 3.42 | 3.73 | 3.85 |
6,6 | aDGlcp | 4.99 | 3.68 | 3.82 | 3.77 | 3.93 | ? |
6 | aDGlcp | 4.99 | 3.59 | 3.73 | 3.54 | ? | ? |
| aDGlcp | 5.24 | 3.54 | 3.71 | 3.52 | 4.02 | 3.71 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
6,6,3,6 | aDGlcp | 99.1 | 72.9 | 74.4 | 70.7 | 73.2 | 61.6 |
6,6,3 | aDGlcp | 100.9 | 72.9 | 74.4 | 70.6 | 71.6 | 66.5 |
6,6,6 | aDGlcp | 99.1 | 72.9 | 74.4 | 70.7 | 73.2 | 61.6 |
6,6 | aDGlcp | 99.0 | 71.4 | 82.3 | 71.3 | 71.2 | 66.7 |
6 | aDGlcp | 99.3 | 72.8 | 74.8 | ? | ? | 66.7 |
| aDGlcp | 97.5 | 75.4 | 77.3 | 70.8 | 75.6 | 66.9 |
|
 The spectrum also has 2 signals at unknown positions (not plotted). |
There is only one chemically distinct structure:
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