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Huang Y, Li B, Yin J, Yang Q, Sheng O, Deng G, Li C, Hu C, Dong T, Dou T, Gao H, Bi F, Yi G
CgGCS, encoding a glucosylceramide synthase, is required for growth, conidiation and pathogenicity in Colletotrichum gloeosporioides
Frontiers in Microbiology 10 (2019)
ID 1016
Colletotrichum gloeosporioides Cg-14
(NCBI TaxID 1237896,
species name lookup)
Colletotrichum gloeosporioides Cg-14 (ΔGCS mutant)
(Ancestor NCBI TaxID 1237896,
species name lookup)
Taxonomic group: fungi / Ascomycota
(Phylum: Ascomycota)
Host organism: Persea americana
Organ / tissue: fruit,
mycelium
NCBI PubMed ID: 31164871Publication DOI: 10.3389/fmicb.2019.01016Journal NLM ID: 101548977Publisher: Lausanne: Frontiers Research Foundation
Correspondence: Bi F <fangchengbi

gmail.com>; Yi G <yiganjun

vip.163.com>
Institutions: Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Guangzhou, China, Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture, Guangzhou, China, Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangzhou, China,, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China, College of Life Sciences, South China Agricultural University, Guangzhou, China, School of Life Sciences, Sun Yat-sen University, Guangzhou, China
Fungal glucosylceramide plays important role in cell division, hyphal formation and growth, spore germination and the modulation of virulence and has recently been considered as target for small molecule inhibitors. In this study, we characterized CgGCS, a protein encoding a glucosylceramide synthase (GCS) in Colletotrichum gloeosporioides. Disruption of CgGCS resulted in a severe reduction of mycelial growth and defects in conidiogenesis. Sphingolipid profile analysis revealed large decreases in glucosylceramide production in the mutant strains. Pathogenicity assays indicated that the ability of the ΔCgGCS mutants to invade both tomato and mango hosts was almost lost. In addition, the expression levels of many genes, especially those related to metabolism, were shown to be affected by the mutation of CgGCS via transcriptome analysis. Overall, our results demonstrate that C. gloeosporioides glucosylceramide is an important regulatory factor in fungal growth, conidiation, and pathogenesis in hosts.
pathogenicity, glucosylceramide, Colletotrichum gloeosporioides, GCS conidiogenesis, growth rate
Structure type: monomer
Location inside paper: Fig. 5, A, gCer
Compound class: glycolipid, glycosphingolipid
Contained glycoepitopes: IEDB_137339,IEDB_142488,IEDB_146664,IEDB_983931,SB_192,SB_5
Methods: PCR, DNA techniques, biological assays, extraction, cell growth, sonication, centrifugation, qRT-PCR, HPLC-QTOF-MS
NCBI Taxonomy refs (TaxIDs): 1237896
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There is only one chemically distinct structure:
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Usvalampi A, Medrano MR, Maaheimo H, Salminen H, Tossavainen O, Frey AD
Production and characterization of Aspergillus niger GH29 family α-fucosidase and production of a novel non-reducing 1-fucosyllactose
Glycoconjugate Journal 37(2) (2020)
221-229
Aspergillus niger CBS 513.88
(NCBI TaxID 425011,
species name lookup)
Taxonomic group: fungi / Ascomycota
(Phylum: Ascomycota)
NCBI PubMed ID: 31792892Publication DOI: 10.1007/s10719-019-09896-wJournal NLM ID: 8603310Publisher: Kluwer Academic Publishers
Correspondence: anne.usvalampi

aalto.fi
Institutions: Department of Bioproducts and Biosystems, Aalto University School of Chemical Engineering, Espoo, Finland, VTT Technical Research Centre of Finland Ltd., Espoo, Finland, Valio Ltd., Helsinki, Finland
Fucosylated oligosaccharides are interesting molecules due to their bioactive properties. In particular, their application as active ingredient in milk powders is attractive for dairy industries. The objective of this study was to characterize the glycosyl hydrolase family 29 α-fucosidase produced by Aspergillus niger and test its ability to transfucosylate lactose with a view towards potential industrial applications such as the valorization of the lactose side stream produced by dairy industry. In order to reduce costs and toxicity the use of free fucose instead of environmentally questionable fucose derivatives was studied. In contrast to earlier studies, a recombinantly produced A. niger α-fucosidase was utilized. Using pNP-fucose as substrate, the optimal pH for hydrolytic activity was determined to be 3.8. The optimal temperature for a 30-min reaction was 60 °C, and considering temperature stability, the optimal temperature for a 24-h reaction was defined as 45 °C For the same hydrolysis reaction, the kinetic values were calculated to be 0.385 mM for the KM and 2.8 mmol/mg/h for the Vmax. Transfucosylation of lactose occurred at high substrate concentrations when reaction time was elongated to several days. The structure of the product trisaccharide was defined as 1-fucosyllactose, where fucose is α-linked to the anomeric carbon of the β-glucose moiety of lactose. Furthermore, the enzyme was able to hydrolyze its own transfucosylation product and 2'-fucosyllactose but only poorly 3-fucosyllactose. As a conclusion, α-fucosidase from A. niger can transfucosylate lactose using free fucose as substrate producing a novel non-reducing 1-fucosyllactose.
Aspergillus niger, 1-fucosyllactose, fucosyllactose, non-reducing sugar, transfucosylation, α-fucosidase
Structure type: oligomer
Location inside paper: Fig. 3, supplementary materials, Table S2
Trivial name: 1-fucosyllactose
Compound class: trisaccharide
Contained glycoepitopes: IEDB_136044,IEDB_136045,IEDB_137472,IEDB_141794,IEDB_142487,IEDB_142488,IEDB_142489,IEDB_144562,IEDB_146664,IEDB_152214,IEDB_174333,IEDB_190606,IEDB_983931,SB_165,SB_166,SB_187,SB_192,SB_195,SB_6,SB_7,SB_86,SB_88
Methods: 13C NMR, 1H NMR, NMR-2D, PCR, SDS-PAGE, Western blotting, enzymatic digestion, HPAEC-PAD, column chromatography, cell growth, MALDI-TOF/TOF MS, enzymatic assay, centrifugation, ultrafiltration, gene cloning, HPLC-QTOF-MS
Enzymes that release or process the structure: α-L-fucosidase
Synthetic data: enzymatic
Comments, role: DSS-referenced 13C NMR chemical shifts look like shifted (-1.6) by authors to accord to TMS reference
NCBI Taxonomy refs (TaxIDs): 425011Reference(s) to other database(s): GTC:G57530IM, GenDB:XP_001396349.2
Show glycosyltransferases
NMR conditions: in D2O / 0.05%TSP at 295 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
1,4 bDGalp 104.2 72.3 73.8 69.8 76.7 62.3
1 bDGlcp 98.5 73.7 75.5 79.5 76.2 61.2
aLFucp 96.5 68.6 70.7 73.0 68.5 16.6
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
1,4 bDGalp 4.456 3.545 3.666 3.926 3.727 3.773
1 bDGlcp 4.658 3.423 3.674 3.701 3.598 3.826-3.971
aLFucp 5.283 3.838 3.913 3.833 4.220 1.216
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
1,4 bDGalp 104.2/4.456 72.3/3.545 73.8/3.666 69.8/3.926 76.7/3.727 62.3/3.773
1 bDGlcp 98.5/4.658 73.7/3.423 75.5/3.674 79.5/3.701 76.2/3.598 61.2/3.826-3.971
aLFucp 96.5/5.283 68.6/3.838 70.7/3.913 73.0/3.833 68.5/4.220 16.6/1.216
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
1,4 | bDGalp | 4.456 | 3.545 | 3.666 | 3.926 | 3.727 | 3.773 |
1 | bDGlcp | 4.658 | 3.423 | 3.674 | 3.701 | 3.598 | 3.826 3.971 |
| aLFucp | 5.283 | 3.838 | 3.913 | 3.833 | 4.220 | 1.216 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
1,4 | bDGalp | 104.2 | 72.3 | 73.8 | 69.8 | 76.7 | 62.3 |
1 | bDGlcp | 98.5 | 73.7 | 75.5 | 79.5 | 76.2 | 61.2 |
| aLFucp | 96.5 | 68.6 | 70.7 | 73.0 | 68.5 | 16.6 |
|
There is only one chemically distinct structure:
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Kojima Y, Honda C, Kobayashi I, Katsuta R, Matsumura S, Wagatsuma I, Takehisa M, Shindo H, Hosaka M, Nukada T, Tokuoka M
Transglycosylation forms novel glycoside ethyl α-maltoside and ethyl α-isomaltoside in sake during the brewing process by α-glucosidase A of Aspergillus oryzae
Journal of Agricultural and Food Chemistry 68(5) (2020)
1419-1426
Aspergillus oryzae NSCS
(Ancestor NCBI TaxID 5062,
species name lookup)
Aspergillus oryzae NS4ΔligD (ΔagdA mutant)
(Ancestor NCBI TaxID 5062,
species name lookup)
Taxonomic group: fungi / Ascomycota
(Phylum: Ascomycota)
NCBI PubMed ID: 31888328Publication DOI: 10.1021/acs.jafc.9b06936Journal NLM ID: 0374755Publisher: American Chemical Society
Correspondence: m3tokuok

nodai.ac.jp
Institutions: Graduate School of Agriculture, Department of Fermentation Science and Technology, Tokyo University of Agriculture, Tokyo, Japan, Department of Chemistry for Life Sciences and Agriculture, Tokyo University of Agriculture, Tokyo, Japan, Department of Fermentation Science, Tokyo University of Agriculture, Tokyo, Japan
Sake, the Japanese rice wine, contains a variety of oligosaccharides and glucosides produced by fungal enzymes during the brewing process. This study investigates the effect of knocking out the Aspergillus oryzae α-glucosidase (agdA) gene on the transglycosylation products in brewed sake. In addition to α-ethyl glucoside and α-glyceryl glucoside, the amount of two compounds that have molecular mass values similar to that of ethyl maltose decreased by agdA gene knockout. Both compounds were synthesized, in vitro, from maltose and ethanol with purified agdA. Nuclear magnetic resonance analysis identified the two compounds as ethyl α-maltoside and ethyl α-isomaltoside, respectively, which are novel compounds in sake as well as in the natural environment. Quantitative analysis of 111 commercially available types of sake showed that these novel compounds were widely present at concentrations of several hundred mg/L, suggesting that both of them are ones of the common glycosides in sake.
glucoside, transglycosylation, Aspergillus oryzae, α-glucosidase, brewing, sake
Structure type: oligomer
Location inside paper: p. 1423, Fig. 5, A, supplementary materials, Table S3
Compound class: glycoside
Contained glycoepitopes: IEDB_140629,IEDB_142488,IEDB_144998,IEDB_146664,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, NMR-2D, PCR, DNA cloning, SDS-PAGE, DNA techniques, HPLC, Southern blotting, cell growth, enzymatic assay, LC, centrifugation, ultrafiltration, Lowry method, HPLC-QTOF-MS
Enzymes that release or process the structure: α-glucosidase A
Biosynthesis and genetic data: genetic data
Related record ID(s): 50400
NCBI Taxonomy refs (TaxIDs): 5062
Show glycosyltransferases
NMR conditions: in D2O
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
1,4 aDGlcp 99.7 71.8 72.9 69.4 72.7 60.5
1 aDGlcp 97.8 71.1 73.7 77.0 70.2 60.6
Et 64.0 14.2
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
1,4 aDGlcp 5.32 3.50 3.61 3.34 3.63 3.69-3.79
1 aDGlcp 4.85 3.51 3.88 3.56 3.73 3.69-3.80
Et 3.50-3.71 1.15
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
1,4 aDGlcp 99.7/5.32 71.8/3.50 72.9/3.61 69.4/3.34 72.7/3.63 60.5/3.69-3.79
1 aDGlcp 97.8/4.85 71.1/3.51 73.7/3.88 77.0/3.56 70.2/3.73 60.6/3.69-3.80
Et 64.0/3.50-3.71 14.2/1.15
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
1,4 | aDGlcp | 5.32 | 3.50 | 3.61 | 3.34 | 3.63 | 3.69 3.79 |
1 | aDGlcp | 4.85 | 3.51 | 3.88 | 3.56 | 3.73 | 3.69 3.80 |
| Et | 3.50 3.71 | 1.15 | |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
1,4 | aDGlcp | 99.7 | 71.8 | 72.9 | 69.4 | 72.7 | 60.5 |
1 | aDGlcp | 97.8 | 71.1 | 73.7 | 77.0 | 70.2 | 60.6 |
| Et | 64.0 | 14.2 | |
|
There is only one chemically distinct structure:
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Kojima Y, Honda C, Kobayashi I, Katsuta R, Matsumura S, Wagatsuma I, Takehisa M, Shindo H, Hosaka M, Nukada T, Tokuoka M
Transglycosylation forms novel glycoside ethyl α-maltoside and ethyl α-isomaltoside in sake during the brewing process by α-glucosidase A of Aspergillus oryzae
Journal of Agricultural and Food Chemistry 68(5) (2020)
1419-1426
Aspergillus oryzae NSCS
(Ancestor NCBI TaxID 5062,
species name lookup)
Aspergillus oryzae NS4ΔligD (ΔagdA mutant)
(Ancestor NCBI TaxID 5062,
species name lookup)
Taxonomic group: fungi / Ascomycota
(Phylum: Ascomycota)
NCBI PubMed ID: 31888328Publication DOI: 10.1021/acs.jafc.9b06936Journal NLM ID: 0374755Publisher: American Chemical Society
Correspondence: m3tokuok

nodai.ac.jp
Institutions: Graduate School of Agriculture, Department of Fermentation Science and Technology, Tokyo University of Agriculture, Tokyo, Japan, Department of Chemistry for Life Sciences and Agriculture, Tokyo University of Agriculture, Tokyo, Japan, Department of Fermentation Science, Tokyo University of Agriculture, Tokyo, Japan
Sake, the Japanese rice wine, contains a variety of oligosaccharides and glucosides produced by fungal enzymes during the brewing process. This study investigates the effect of knocking out the Aspergillus oryzae α-glucosidase (agdA) gene on the transglycosylation products in brewed sake. In addition to α-ethyl glucoside and α-glyceryl glucoside, the amount of two compounds that have molecular mass values similar to that of ethyl maltose decreased by agdA gene knockout. Both compounds were synthesized, in vitro, from maltose and ethanol with purified agdA. Nuclear magnetic resonance analysis identified the two compounds as ethyl α-maltoside and ethyl α-isomaltoside, respectively, which are novel compounds in sake as well as in the natural environment. Quantitative analysis of 111 commercially available types of sake showed that these novel compounds were widely present at concentrations of several hundred mg/L, suggesting that both of them are ones of the common glycosides in sake.
glucoside, transglycosylation, Aspergillus oryzae, α-glucosidase, brewing, sake
Structure type: oligomer
Location inside paper: p. 1423, Fig. 5, B, supplementary materials, Table S4
Compound class: glycoside
Contained glycoepitopes: IEDB_142488,IEDB_144998,IEDB_146664,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, NMR-2D, PCR, DNA cloning, SDS-PAGE, DNA techniques, HPLC, Southern blotting, cell growth, enzymatic assay, LC, centrifugation, ultrafiltration, Lowry method, HPLC-QTOF-MS
Enzymes that release or process the structure: α-glucosidase A
Biosynthesis and genetic data: genetic data
Related record ID(s): 50399
NCBI Taxonomy refs (TaxIDs): 5062
Show glycosyltransferases
NMR conditions: in D2O
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
1,6 aDGlcp 98.1 71.7 73.3 69.8 72.1 60.7
1 aDGlcp 98.2 71.4 73.7 69.7 70.4 65.8
Et 64.4 14.4
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
1,6 aDGlcp 4.95 3.55 3.72 3.43 3.71 3.77-3.85
1 aDGlcp 4.94 3.56 3.69 3.52 3.87 3.72-3.99
Et 3.59-3.81 1.23
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
1,6 aDGlcp 98.1/4.95 71.7/3.55 73.3/3.72 69.8/3.43 72.1/3.71 60.7/3.77-3.85
1 aDGlcp 98.2/4.94 71.4/3.56 73.7/3.69 69.7/3.52 70.4/3.87 65.8/3.72-3.99
Et 64.4/3.59-3.81 14.4/1.23
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
1,6 | aDGlcp | 4.95 | 3.55 | 3.72 | 3.43 | 3.71 | 3.77 3.85 |
1 | aDGlcp | 4.94 | 3.56 | 3.69 | 3.52 | 3.87 | 3.72 3.99 |
| Et | 3.59 3.81 | 1.23 | |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
1,6 | aDGlcp | 98.1 | 71.7 | 73.3 | 69.8 | 72.1 | 60.7 |
1 | aDGlcp | 98.2 | 71.4 | 73.7 | 69.7 | 70.4 | 65.8 |
| Et | 64.4 | 14.4 | |
|
There is only one chemically distinct structure:
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