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Renard CMGC, Crépeau MJ, Thibault JF
Glucuronic acid directly linked to galacturonic acid in the rhamnogalacturonan backbone of beet pectins
European Journal of Biochemistry 266(2) (1999)
566-574
b-D-GlcpA-(1-3)-a-D-GalpA-(1-2)-a-L-Rhap-(1-4)-a-D-GalpA-(1-2)-L-Rhap |
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Beta vulgaris ssp. vulgaris
(previously named: Beta vulgaris ssp. vulgaris var. altissima, Beta vulgaris var. altissima)
(NCBI TaxID 3555,
species name lookup)
Taxonomic group: plant / Streptophyta
(Phylum: Streptophyta)
Organ / tissue: root
The structure was elucidated in this paperNCBI PubMed ID: 10561599Publication DOI: 10.1046/j.1432-1327.1999.00896.xJournal NLM ID: 0107600Publisher: Oxford, UK: Blackwell Science Ltd. on behalf of the Federation of European Biochemical Societies
Correspondence: Renard CMGC <crenard

rennes.inra.fr>
Institutions: Unité de Recherches sur les Polysaccharides, leurs Organisations et Interactions, Institut National de la Recherche Agronomique, Centre de Recherche Agro-Alimentaire de Nantes, Nantes, France
Sugar-beet pulp was de-esterified and submitted to 72 h hydrolysis by 0.1 M HCl at 80°C. Oligomers containing a single glucuronic acid (GlcA) moiety in addition to n(≥ 2) repeats of the dimer →4)-α-D-GalpA-(1→2)-α-LRhap-(1→ were isolated from the hydrolysate by ion-exchange and gel-permeation. Glycosyl linkage composition analysis and 1H NMR studies indicated that the GlcA was attached to O-3 of a galacturonic acid (GalA) residue, as shown for the two pentamers β-D-GlcpA-(1→)-α-D-GalpA-(1→2)-α-L-Rhap-(1→4)-α-DGalpA-(1→2)-L-Rhap and α-D-GalpA-(1→2)-α-L-Rhap-(1→4)-[β-D-GlcpA-(1→3)]-α-D-GalpA-(1→2)-L-Rhap. Substitution by GlcA was estimated as occurring on one Gala residue out of 72 in the rhamnogalacturonan fraction of the backbone of beet pectins.
glucuronic acid, sugar beet, rhamnogalacturonan, pectin
Structure type: oligomer
Location inside paper: oligomer 1c, table 3(1c)
Compound class: pectin, rhamnogalacturonan
Contained glycoepitopes: IEDB_115136,IEDB_116885,IEDB_136105,IEDB_140630,IEDB_225177,IEDB_423153,IEDB_885823
Methods: 1H NMR, GLC, HPAEC, GPC, ion-exchange chromatography, acetylation, TOCSY, methylation analysis, dialysis, NOESY, HOHAHA, HCl hydrolysis, TFA hydrolysis, DFQ-COSY, reduction with LiBDEt3
Related record ID(s): 63108
NCBI Taxonomy refs (TaxIDs): 3555Reference(s) to other database(s): GTC:G89842HR
Show glycosyltransferases
NMR conditions: in D2O at 315(H) K
[as TSV]
13C NMR data:
missing...
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
2,4,2,3 bDGlcpA 4.72 3.41 3.54 3.54 3.75 -
2,4,2 aDGalpA 5.04 4.00 4.13 4.54 4.62 -
2,4 aLRhap 5.30 4.13 3.89 3.43 3.80 1.26
2 aDGalpA 5.07-5.16 3.93-3.99 4.12-4.14 4.44-4.45 4.60 -
?LRhap 4.92-5.23 3.97-4.05 3.64-3.89 3.36-3.47 3.41-3.81 1.28-1.30
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
2,4,2,3 | bDGlcpA | 4.72 | 3.41 | 3.54 | 3.54 | 3.75 |
|
2,4,2 | aDGalpA | 5.04 | 4.00 | 4.13 | 4.54 | 4.62 |
|
2,4 | aLRhap | 5.30 | 4.13 | 3.89 | 3.43 | 3.80 | 1.26 |
2 | aDGalpA | 5.07 5.16 | 3.93 3.99 | 4.12 4.14 | 4.44 4.45 | 4.60 |
|
| ?LRhap | 4.92 5.23 | 3.97 4.05 | 3.64 3.89 | 3.36 3.47 | 3.41 3.81 | 1.28 1.30 |
|
There is only one chemically distinct structure:
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Renard CMGC, Crépeau MJ, Thibault JF
Glucuronic acid directly linked to galacturonic acid in the rhamnogalacturonan backbone of beet pectins
European Journal of Biochemistry 266(2) (1999)
566-574
b-D-GlcpA-(1-3)-+
|
a-D-GalpA-(1-2)-a-L-Rhap-(1-4)-a-D-GalpA-(1-2)-L-Rhap |
Show graphically |
Beta vulgaris ssp. vulgaris
(previously named: Beta vulgaris ssp. vulgaris var. altissima, Beta vulgaris var. altissima)
(NCBI TaxID 3555,
species name lookup)
Taxonomic group: plant / Streptophyta
(Phylum: Streptophyta)
Organ / tissue: root
The structure was elucidated in this paperNCBI PubMed ID: 10561599Publication DOI: 10.1046/j.1432-1327.1999.00896.xJournal NLM ID: 0107600Publisher: Oxford, UK: Blackwell Science Ltd. on behalf of the Federation of European Biochemical Societies
Correspondence: Renard CMGC <crenard

rennes.inra.fr>
Institutions: Unité de Recherches sur les Polysaccharides, leurs Organisations et Interactions, Institut National de la Recherche Agronomique, Centre de Recherche Agro-Alimentaire de Nantes, Nantes, France
Sugar-beet pulp was de-esterified and submitted to 72 h hydrolysis by 0.1 M HCl at 80°C. Oligomers containing a single glucuronic acid (GlcA) moiety in addition to n(≥ 2) repeats of the dimer →4)-α-D-GalpA-(1→2)-α-LRhap-(1→ were isolated from the hydrolysate by ion-exchange and gel-permeation. Glycosyl linkage composition analysis and 1H NMR studies indicated that the GlcA was attached to O-3 of a galacturonic acid (GalA) residue, as shown for the two pentamers β-D-GlcpA-(1→)-α-D-GalpA-(1→2)-α-L-Rhap-(1→4)-α-DGalpA-(1→2)-L-Rhap and α-D-GalpA-(1→2)-α-L-Rhap-(1→4)-[β-D-GlcpA-(1→3)]-α-D-GalpA-(1→2)-L-Rhap. Substitution by GlcA was estimated as occurring on one Gala residue out of 72 in the rhamnogalacturonan fraction of the backbone of beet pectins.
glucuronic acid, sugar beet, rhamnogalacturonan, pectin
Structure type: oligomer
Location inside paper: oligomer 1b, table 3(1b)
Compound class: pectin, rhamnogalacturonan
Contained glycoepitopes: IEDB_115136,IEDB_116885,IEDB_136105,IEDB_140630,IEDB_225177,IEDB_423153,IEDB_885823
Methods: 1H NMR, GLC, HPAEC, GPC, ion-exchange chromatography, acetylation, TOCSY, methylation analysis, dialysis, NOESY, HOHAHA, HCl hydrolysis, TFA hydrolysis, DFQ-COSY, reduction with LiBDEt3
Related record ID(s): 63107
NCBI Taxonomy refs (TaxIDs): 3555Reference(s) to other database(s): GTC:G58194YQ
Show glycosyltransferases
NMR conditions: in D2O at 320(H) K
[as TSV]
13C NMR data:
missing...
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
2,3 bDGlcpA 4.72-4.75 3.45 3.57 3.57 3.71 -
2,4,2 aDGalpA 5.08 3.86 3.97 4.30 4.62 -
2,4 aLRhap 5.41 4.11 3.90 3.41 3.78 1.24
2 aDGalpA 5.07-5.16 4.09-4.13 4.25-4.27 4.60 4.64 -
?LRhap 4.92-5.24 3.98-4.08 3.64-3.87 3.37-3.51 3.40-3.87 1.29-1.31
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
2,3 | bDGlcpA | 4.72 4.75 | 3.45 | 3.57 | 3.57 | 3.71 |
|
2,4,2 | aDGalpA | 5.08 | 3.86 | 3.97 | 4.30 | 4.62 |
|
2,4 | aLRhap | 5.41 | 4.11 | 3.90 | 3.41 | 3.78 | 1.24 |
2 | aDGalpA | 5.07 5.16 | 4.09 4.13 | 4.25 4.27 | 4.60 | 4.64 |
|
| ?LRhap | 4.92 5.24 | 3.98 4.08 | 3.64 3.87 | 3.37 3.51 | 3.40 3.87 | 1.29 1.31 |
|
There is only one chemically distinct structure:
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