CSDB: Search results

Found 7 organisms. Displayed organisms from 1 to 7
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1. (Organism ID: 4948)

Burkholderia cenocepacia

(NCBI TaxID 95486, species name lookup)

Taxonomic group: bacteria
Phylum: Proteobacteria

The following compound(s) are assigned to this organism:

Compound ID: 9242

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Compound ID: 9367

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Structure type: oligomer
Trivial name: 1,7-linked L-glycero-D-manno-heptobiose
Reference(s) to other database(s): GTC:G41138RA

Carbohydrate Research 2011, "Crystal and molecular structure of methyl L-glycero-a-D-manno-heptopyranoside, and synthesis of 1→7 linked L-glycero-D-manno-heptobiose and its methyl a-glycoside"
CSDB ID 26133 (all data & tools)
Compound ID: 1030

-6)-b-D-GlcpNAc-(1- Show graphically

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Structure type: homopolymer
Trivial name: poly-β-1,6-GlcNAc (PGA), biofilm, poly-b-(1-6)-N-acetyl-D-glucosamine (PNAG), poly-β-N-acetyl-glucosamine (PNAG), PNAG, poly-N-acetylglucosamine, PNAG
Compound class: CPS, EPS, O-polysaccharide, glucan, polysaccharide
Reference(s) to other database(s): GTC:G36952FI, GlycomeDB:11210

Applied and Environmental Microbiology 2011, "Characterization of the poly-b-1,6-N-Acetylglucosamine Polysaccharide Component of Burkholderia Biofilms"
CSDB ID 26393 (all data & tools)
Compound ID: 10650

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Structure type: monomer

Glycobiology 2012, "Burkholderia cenocepacia lectin A binding to heptoses from the bacterial lipopolysaccharide"
CSDB ID 28451 (all data & tools)
Compound ID: 10651

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Structure type: oligomer

Glycobiology 2012, "Burkholderia cenocepacia lectin A binding to heptoses from the bacterial lipopolysaccharide"
CSDB ID 28452 (all data & tools)
Compound ID: 10652

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Structure type: oligomer

Glycobiology 2012, "Burkholderia cenocepacia lectin A binding to heptoses from the bacterial lipopolysaccharide"
CSDB ID 28453 (all data & tools)

Compound ID: 11141

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Compound ID: 12063

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Structure type: oligomer
Aglycon: inner core-lipid A
Trivial name: saccharide epitope
Compound class: LOS
Reference(s) to other database(s): GTC:G58001LB

Carbohydrate Research 2015, "Synthesis of the tetrasaccharide outer core fragment of Burkholderia multivorans lipooligosaccharide"
CSDB ID 30900 (all data & tools)
Compound ID: 2243

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Structure type: polymer chemical repeating unit
Trivial name: K-antigen, galactan-Kdo, Kdo-EPS
Compound class: CPS, EPS
Reference(s) to other database(s): GTC:G77110LE, GlycomeDB:25312

Natural Product Reports 2018, "Polysaccharides from Burkholderia species as targets for vaccine development, immunomodulation and chemical synthesis"
CSDB ID 12475 (all data & tools)

Compound ID: 12955

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Compound ID: 12956

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Structure type: polymer chemical repeating unit
Trivial name: co-cepacian
Compound class: EPS
Reference(s) to other database(s): GTC:G86277RB

Natural Product Reports 2018, "Polysaccharides from Burkholderia species as targets for vaccine development, immunomodulation and chemical synthesis"
CSDB ID 12479 (all data & tools)
Compound ID: 12957

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Structure type: polymer chemical repeating unit
Trivial name: PNAG
Compound class: EPS
Reference(s) to other database(s): GTC:G84392XC

Natural Product Reports 2018, "Polysaccharides from Burkholderia species as targets for vaccine development, immunomodulation and chemical synthesis"
CSDB ID 12481 (all data & tools)
Compound ID: 240

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Structure type: polymer chemical repeating unit
Trivial name: neutral glycan
Compound class: O-polysaccharide, O-antigen, LPS
Reference(s) to other database(s): GTC:G46905WE, GlycomeDB:3417, CCSD:12532, CBank-STR:2856

Natural Product Reports 2018, "Polysaccharides from Burkholderia species as targets for vaccine development, immunomodulation and chemical synthesis"
CSDB ID 12489 (all data & tools)
Compound ID: 14804

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Structure type: polymer chemical repeating unit ; n=1,2
Aglycon: (->1)(CH2)3N3 (3-Azidopropyl)
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G06700QW

Current Opinion in Chemical Biology 2020, "Recent progress in chemical synthesis of bacterial surface glycans"
CSDB ID 5101 (all data & tools)

Compound ID: 13145

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2. (Organism ID: 17494)

Clostridium botulinum A

(NCBI TaxID 36826, species name lookup)

Taxonomic group: bacteria
Phylum: Bacillota

No compounds are assigned to this organism (you searched for an associated organism but selected a HOST organism; or this is a virtual organism)

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3. (Organism ID: 22)

Escherichia coli

(NCBI TaxID 562, species name lookup)

Taxonomic group: bacteria
Phylum: Proteobacteria

The following compound(s) are assigned to this organism:

Compound ID: 38

Gal Show graphically

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Structure type: monomer
Reference(s) to other database(s): GTC:G52483PD

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1627 (all data & tools)
Compound ID: 39

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Structure type: monomer
Aglycon: O-para-nitrophenyl or S-para-nitrophenyl
Reference(s) to other database(s): GTC:G09546QO, GlycomeDB:3601

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1715 (all data & tools)
Compound ID: 40

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Structure type: monomer
Aglycon: para-nitrothiophenyl
Reference(s) to other database(s): GTC:G65889KE, GlycomeDB:115

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1717 (all data & tools)
Compound ID: 41

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Structure type: oligomer
Aglycon: para-nitrophenyl
Reference(s) to other database(s): GTC:G84224TW, GlycomeDB:118

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1719 (all data & tools)
Compound ID: 42

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Structure type: oligomer
Reference(s) to other database(s): GTC:G13745WN, GlycomeDB:1544

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1720 (all data & tools)
Compound ID: 43

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Structure type: oligomer
Reference(s) to other database(s): GTC:G75192NK, GlycomeDB:384

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1721 (all data & tools)
Compound ID: 44

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Structure type: oligomer
Reference(s) to other database(s): GTC:G09675VB, GlycomeDB:557

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1722 (all data & tools)
Compound ID: 45

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Structure type: oligomer
Reference(s) to other database(s): GTC:G40657ZV, GlycomeDB:172

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1723 (all data & tools)
Compound ID: 46

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Structure type: oligomer
Reference(s) to other database(s): GTC:G02909JE, GlycomeDB:439

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1724 (all data & tools)
Compound ID: 47

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Structure type: oligomer

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1725 (all data & tools)
Compound ID: 48

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Structure type: oligomer
Aglycon: (CH2)8CO2CH3 or para-nitrothiophenyl
Reference(s) to other database(s): GTC:G45315EX

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1726 (all data & tools)
Compound ID: 49

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Structure type: oligomer
Reference(s) to other database(s): GTC:G93268KU

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1728 (all data & tools)
Compound ID: 50

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Structure type: oligomer
Aglycon: p-nitrophenyl
Reference(s) to other database(s): GTC:G28052FT, GlycomeDB:327

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1729 (all data & tools)
Compound ID: 51

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Structure type: oligomer
Reference(s) to other database(s): GTC:G44617RE

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1730 (all data & tools)
Compound ID: 52

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Structure type: oligomer
Compound class: LPS
Reference(s) to other database(s): GTC:G26424YB, GlycomeDB:447

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1731 (all data & tools)
Compound ID: 53

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Structure type: oligomer
Reference(s) to other database(s): GTC:G46067UI

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1732 (all data & tools)
Compound ID: 54

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Structure type: oligomer
Aglycon: p-nitrophenyl
Reference(s) to other database(s): GTC:G54670RT

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1734 (all data & tools)
Compound ID: 55

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Structure type: oligomer
Reference(s) to other database(s): GTC:G09000WS, GlycomeDB:2520

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1735 (all data & tools)
Compound ID: 56

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Structure type: oligomer
Reference(s) to other database(s): GTC:G31262IS, GlycomeDB:998

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1736 (all data & tools)
Compound ID: 57

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Structure type: oligomer
Trivial name: lacto-N-biose
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G04616ST, GlycomeDB:11384

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1737 (all data & tools)
Compound ID: 58

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Structure type: oligomer
Aglycon: (CH2)2NHC(O)OCH2Ph
Reference(s) to other database(s): GTC:G00056MO, GlycomeDB:307

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1738 (all data & tools)
Compound ID: 59

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Structure type: oligomer
Trivial name: lacto-N-tetraose
Reference(s) to other database(s): GTC:G02782UU, GlycomeDB:965

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1739 (all data & tools)
Compound ID: 60

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Structure type: oligomer
Trivial name: Lewisa, Lewis a
Reference(s) to other database(s): GTC:G05450JY, GlycomeDB:1403

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1740 (all data & tools)
Compound ID: 61

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Structure type: oligomer
Reference(s) to other database(s): GTC:G67969CT, GlycomeDB:47

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1741 (all data & tools)
Compound ID: 62

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Structure type: oligomer
Aglycon: p-nitrophenyl
Reference(s) to other database(s): GTC:G23202WP

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1742 (all data & tools)
Compound ID: 63

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Structure type: oligomer
Aglycon: p-nitrophenyl
Reference(s) to other database(s): GTC:G63349JM

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1743 (all data & tools)
Compound ID: 64

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Structure type: oligomer
Aglycon: (CH2)8CO2CH3
Reference(s) to other database(s): GTC:G85343TN

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1744 (all data & tools)
Compound ID: 65

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Structure type: oligomer
Reference(s) to other database(s): GTC:G79160ZM, GlycomeDB:1428

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1745 (all data & tools)
Compound ID: 66

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Structure type: oligomer

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1746 (all data & tools)
Compound ID: 67

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Structure type: oligomer

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1747 (all data & tools)
Compound ID: 68

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Structure type: oligomer
Trivial name: globotriose
Reference(s) to other database(s): GTC:G07992YV, GlycomeDB:1306

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1748 (all data & tools)
Compound ID: 69

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Structure type: oligomer
Aglycon: (CH2)8CO2CH3
Reference(s) to other database(s): GTC:G46372KU

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1749 (all data & tools)
Compound ID: 70

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Structure type: oligomer
Trivial name: raffinose
Reference(s) to other database(s): GTC:G16195BQ, GlycomeDB:25474

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1750 (all data & tools)
Compound ID: 71

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Structure type: oligomer
Trivial name: stachyose
Reference(s) to other database(s): GTC:G99857RQ, GlycomeDB:25475

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1751 (all data & tools)
Compound ID: 72

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Structure type: oligomer
Reference(s) to other database(s): GTC:G50274CU

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1752 (all data & tools)
Compound ID: 73

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Structure type: oligomer
Reference(s) to other database(s): GTC:G29396CW, GlycomeDB:192

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1753 (all data & tools)
Compound ID: 74

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Structure type: oligomer
Reference(s) to other database(s): GTC:G22699IF

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1754 (all data & tools)
Compound ID: 75

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Structure type: oligomer
Reference(s) to other database(s): GTC:G13668YX

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1755 (all data & tools)

Compound ID: 76

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Compound ID: 77

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Compound ID: 78

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Compound ID: 79

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Compound ID: 80

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Compound ID: 81

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Compound ID: 82

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Structure type: oligomer
Aglycon: p-nitrophenyl
Reference(s) to other database(s): GTC:G06239NA, GlycomeDB:599

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1762 (all data & tools)
Compound ID: 83

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Structure type: oligomer
Aglycon: p-nitrophenyl
Reference(s) to other database(s): GTC:G64943CI, GlycomeDB:3196

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1763 (all data & tools)
Compound ID: 84

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Structure type: oligomer
Aglycon: p-nitrophenyl
Reference(s) to other database(s): GTC:G69538FB, GlycomeDB:5169

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1764 (all data & tools)
Compound ID: 129

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Structure type: polymer chemical repeating unit
Trivial name: ECA, ECA LPS, enterobacterial common antigen (ECA)
Compound class: enterobacterial common antigen
Reference(s) to other database(s): GTC:G63996VH, GlycomeDB:7812

Carbohydrate Research 1995, "Determination by NMR spectroscopy of the structure and conformational features of the enterobacterial common antigen isolated from Escherichia coli"
CSDB ID 1667 (all data & tools)

FEMS Microbiology Reviews 2000, "Psudomonas aeruginosa B-band lipopolysaccharide genes wbpA and wbpI and their Escherichia coli homologues wecC and wecB are not functionally interchangeable"
CSDB ID 6504 (all data & tools)

Future Microbiology 2016, "The first sugar of the repeat units is essential for the Wzy polymerase activity and elongation of the O-antigen lipopolysaccharide"
CSDB ID 11789 (all data & tools)

Compound ID: 160

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Compound ID: 188

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Compound ID: 179

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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G47888NW, GlycomeDB:25535

European Journal of Biochemistry 2002, "The structure of the O-chain of the lipopolysaccharide of a prototypal diarrheagenic strain of Hafnia alvei that has characteristics of a new species under the genus Escherichia"
CSDB ID 2042 (all data & tools)

Compound ID: 314

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Compound ID: 375

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Structure type: oligomer
Compound class: lipid A

Journal of Biological Chemistry 2001, "Accumulation of a polyisoprene-linked amino sugar in polymyxin resistant Salmonella typhimurium and Escherichia coli. Structural characterization and transfer to lipid A in the periplasm"
CSDB ID 5231 (all data & tools)

Compound ID: 376

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Compound ID: 400

P-8)-Kdo Show graphically

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Structure type: monomer
Reference(s) to other database(s): GTC:G70705ZI, GlycomeDB:37103

Journal of Biological Chemistry 2002, "KpsF is the arabinose 5-phosphate isomerase required for 3-deoxy-D-manno-octulosonic acid (Kdo) biosynthesis and for both lipooligosaccharide assembly and capsular polysaccharide expression in Neisseria meningitidis"
CSDB ID 5247 (all data & tools)
Compound ID: 401

Kdo Show graphically

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Structure type: monomer
Reference(s) to other database(s): GTC:G69279ZI, GlycomeDB:37740

Journal of Biological Chemistry 2002, "KpsF is the arabinose 5-phosphate isomerase required for 3-deoxy-D-manno-octulosonic acid (Kdo) biosynthesis and for both lipooligosaccharide assembly and capsular polysaccharide expression in Neisseria meningitidis"
CSDB ID 5408 (all data & tools)
Compound ID: 402

Kdop-(2--P--5)--C Show graphically

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Structure type: monomer

Journal of Biological Chemistry 2002, "KpsF is the arabinose 5-phosphate isomerase required for 3-deoxy-D-manno-octulosonic acid (Kdo) biosynthesis and for both lipooligosaccharide assembly and capsular polysaccharide expression in Neisseria meningitidis"
CSDB ID 5409 (all data & tools)

Compound ID: 379

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Compound ID: 426

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Compound ID: 1028

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Compound ID: 1063

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Compound ID: 1064

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Compound ID: 1065

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Structure type: oligomer
Aglycon: inner core
Trivial name: outer R4 core oligosaccharide
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G14695QL, GlycomeDB:27159

FEMS Immunology and Medical Microbiology 1996, "Serological characterisation of anti-endotoxin sera directed against the conjugates of oligosaccharide core of Escherichia coli type R1, R2, R3, J5 and Salmonella Ra with tetanus toxoid"
CSDB ID 7535 (all data & tools)
Compound ID: 1242

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Structure type: monomer

Journal of Infectious Diseases 2001, "Natural development of antibodies to pneumococcal capsular polysaccharides depends on the serotype: Association with pneumococcal carriage and acute otitis media in young children"
CSDB ID 8333 (all data & tools)

Compound ID: 1340

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Compound ID: 1352

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Compound ID: 1454

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Structure type: oligomer
Reference(s) to other database(s): GTC:G10794OA, GlycomeDB:170

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 8942 (all data & tools)
Compound ID: 1455

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Structure type: oligomer
Aglycon: p-nitrophenyl
Trivial name: common epithope
Reference(s) to other database(s): GTC:G84224TW, GlycomeDB:118

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 9073 (all data & tools)
Compound ID: 1456

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Structure type: oligomer
Aglycon: p-nitrophenyl
Trivial name: common epithope
Reference(s) to other database(s): GTC:G00055MO, GlycomeDB:228

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 9074 (all data & tools)
Compound ID: 1457

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Structure type: oligomer
Aglycon: p-nitrophenyl
Trivial name: common epithope
Reference(s) to other database(s): GTC:G21469TE, GlycomeDB:1877

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 9075 (all data & tools)
Compound ID: 1458

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Structure type: oligomer
Aglycon: p-nitrophenyl
Trivial name: common epithope
Reference(s) to other database(s): GTC:G33476GF, GlycomeDB:1436

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 9078 (all data & tools)
Compound ID: 1459

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Structure type: oligomer
Aglycon: p-nitrophenyl
Trivial name: common epithope
Reference(s) to other database(s): GTC:G67272YR, GlycomeDB:16508

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 9079 (all data & tools)
Compound ID: 1460

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Structure type: oligomer
Aglycon: p-nitrophenyl
Trivial name: common epithope
Reference(s) to other database(s): GTC:G79307NW, GlycomeDB:27410

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 9080 (all data & tools)
Compound ID: 1030

-6)-b-D-GlcpNAc-(1- Show graphically

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Structure type: homopolymer
Trivial name: poly-β-1,6-GlcNAc (PGA), biofilm, poly-b-(1-6)-N-acetyl-D-glucosamine (PNAG), poly-β-N-acetyl-glucosamine (PNAG), PNAG, poly-N-acetylglucosamine, PNAG
Compound class: CPS, EPS, O-polysaccharide, glucan, polysaccharide
Reference(s) to other database(s): GTC:G36952FI, GlycomeDB:11210

Journal of Bacteriology 2004, "The pgaABCD locus of Escherichia coli promotes the synthesis of a polysaccharide adhesin required for biofilm formation"
CSDB ID 8984 (all data & tools)

Journal of Bacteriology 2005, "Depolymerization of b-1,6-N-acetyl-D-glucosamine disrupts the integrity of diverse bacterial biofilms"
CSDB ID 10059 (all data & tools)

Molecular Microbiology 2005, "CsrA post-transcriptionally represses pgaABCD, responsible for synthesis of a biofilm polysaccharide adhesin of Escherichia coli"
CSDB ID 10642 (all data & tools)

Organic and Biomolecular Chemistry 2012, "Synthesis and evaluation of inhibitors of E. coli PgaB, a polysaccharide de-N-acetylase involved in biofilm formation"
CSDB ID 29938 (all data & tools)

Trends in Microbiology 2013, "Synthase-dependent exopolysaccharide secretion in Gram-negative bacteria"
CSDB ID 29388 (all data & tools)

PLoS Pathogens 2014, "P. aeruginosa SGNH hydrolase-like rroteins AlgJ and AlgX have similar topology but separate and distinct roles in alginate acetylation"
CSDB ID 46402 (all data & tools)

Engineering (Beijing) 2024, "Antibodies targeting a conserved surface polysaccharide are protective against a wide range of microbial pathogens producing β-1–6-linked poly-N-acetylglucosamine (PNAG)"
CSDB ID 15645 (all data & tools)

Compound ID: 1602

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Compound ID: 1779

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Compound ID: 1815

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Structure type: cyclic polymer repeating unit ; n=4-6
Trivial name: Enterobacterial common antigen
Reference(s) to other database(s): GTC:G63996VH, GlycomeDB:7812

Journal of Biomolecular NMR 2004, "Cyclic enterobacterial common antigen: Potential contaminant of bacterially expressed protein preparations"
CSDB ID 9532 (all data & tools)

Compound ID: 1600

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Compound ID: 1817

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Compound ID: 1818

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Compound ID: 2056

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Structure type: oligomer
Aglycon: lipid A
Trivial name: inner core region, outer core region
Compound class: core oligosaccharide, LPS
Reference(s) to other database(s): GTC:G18751QK, GlycomeDB:26995

European Journal of Biochemistry 2000, "Comparative functional characterization in vitro of heptopyranosyltransferase I (WaaC) and II (WaaF) from Escherichia coli"
CSDB ID 443 (all data & tools)
Compound ID: 942

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Structure type: oligomer
Aglycon: lipid A
Trivial name: outer core region
Compound class: core oligosaccharide, LOS, LPS
Reference(s) to other database(s): GTC:G36348JQ, GlycomeDB:5576

Molecular Microbiology 2000, "Molecular structure of bacterial endotoxin (Escherichia coli Re lipopolysaccharide): implications for formation of a novel heterogeneous lattice structure"
CSDB ID 852 (all data & tools)

Journal of Biological Chemistry 1995, "Inhibition of lipopolysaccharide biosynthesis and cell growth following inactivation of the kdtA gene in Escherichia coli"
CSDB ID 6252 (all data & tools)

Biochemistry 2005, "A Slow, Tight-Binding Inhibitor of the Zinc-Dependent Deacetylase LpxC of Lipid A Biosynthesis with Antibiotic Activity Comparable to Ciprofloxacin"
CSDB ID 10584 (all data & tools)

Journal of Biological Chemistry 2013, "The origin of 8-amino-3,8-dideoxy-D-manno-octulosonic acid (Kdo8N) in the lipopolysaccharide of Shewanella oneidensis"
CSDB ID 29489 (all data & tools)
Compound ID: 2262

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Structure type: monomer
Trivial name: ADP-β-L-glycero-D-manno-heptose, ADP-L-glycero-β-D-manno-heptose
Reference(s) to other database(s): GlycomeDB:25190

Journal of Biological Chemistry 2001, "Biosynthesis of nucleotide-activated D-glycero-D-manno-heptose"
CSDB ID 899 (all data & tools)

Bioorganic and Medicinal Chemistry 2008, "Towards Gram-negative antivirulence drugs: New inhibitors of HldE kinase"
CSDB ID 23513 (all data & tools)
Compound ID: 2264

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Structure type: monomer
Trivial name: ADP-β-D-glycero-D-manno-heptose
Reference(s) to other database(s): GlycomeDB:25347

Journal of Biological Chemistry 2001, "Biosynthesis of nucleotide-activated D-glycero-D-manno-heptose"
CSDB ID 944 (all data & tools)
Compound ID: 2265

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Structure type: monomer
Trivial name: component of core oligosaccharide
Reference(s) to other database(s): GlycomeDB:25190

Journal of Bacteriology 2002, "Biosynthesis pathway of ADP-L-glycero-b-D-manno-heptose in Escherichia coli"
CSDB ID 940 (all data & tools)

Journal of Molecular Biology 2006, "Structure of the Escherichia coli Heptosyltransferase WaaC: Binary Complexes with ADP AND ADP-2-deoxy-2-fluoro Heptose"
CSDB ID 20080 (all data & tools)
Compound ID: 2362

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Structure type: polymer chemical repeating unit
Trivial name: murein

Microbiology 1996, "A hypothetical holoenzyme involved in the replication of the murein sacculus of Eschereichia coli"
CSDB ID 2439 (all data & tools)
Compound ID: 2903

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Structure type: oligomer
Aglycon: (CH2)3S(CH2)2NHCSNH-BSA
Reference(s) to other database(s): GTC:G36348JQ, GlycomeDB:5576

Journal of Endotoxin Research 2002, "A novel strategy for the synthesis of neoglycoconjugates from deacylated deep rough lipopolysaccharides"
CSDB ID 3724 (all data & tools)
Compound ID: 2907

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Structure type: oligomer
Aglycon: (CH2)3S(CH2)2NHCSNH-BSA
Reference(s) to other database(s): GTC:G30068VP, GlycomeDB:5771

Journal of Endotoxin Research 2002, "A novel strategy for the synthesis of neoglycoconjugates from deacylated deep rough lipopolysaccharides"
CSDB ID 3806 (all data & tools)
Compound ID: 2941

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Structure type: oligomer
Reference(s) to other database(s): GTC:G06967ER

Journal of Endotoxin Research 2002, "A novel strategy for the synthesis of neoglycoconjugates from deacylated deep rough lipopolysaccharides"
CSDB ID 3807 (all data & tools)
Compound ID: 2942

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Structure type: oligomer
Reference(s) to other database(s): GTC:G03089SU

Journal of Endotoxin Research 2002, "A novel strategy for the synthesis of neoglycoconjugates from deacylated deep rough lipopolysaccharides"
CSDB ID 3808 (all data & tools)
Compound ID: 2943

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Structure type: oligomer
Reference(s) to other database(s): GTC:G21998JP

Journal of Endotoxin Research 2002, "A novel strategy for the synthesis of neoglycoconjugates from deacylated deep rough lipopolysaccharides"
CSDB ID 3809 (all data & tools)

Compound ID: 2944

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Compound ID: 2945

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Structure type: oligomer
Reference(s) to other database(s): GTC:G82767JW

Journal of Endotoxin Research 2002, "A novel strategy for the synthesis of neoglycoconjugates from deacylated deep rough lipopolysaccharides"
CSDB ID 3811 (all data & tools)
Compound ID: 2946

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Structure type: oligomer
Reference(s) to other database(s): GTC:G70367QE

Journal of Endotoxin Research 2002, "A novel strategy for the synthesis of neoglycoconjugates from deacylated deep rough lipopolysaccharides"
CSDB ID 3812 (all data & tools)
Compound ID: 3654

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Structure type: oligomer
Aglycon: Fig. 1
Reference(s) to other database(s): GTC:G40144CS, GlycomeDB:12750

Glycoconjugate Journal 1999, "The living factory: In vivo production of N-acetyllactosamine containing carbohydrates in E-coli"
CSDB ID 6257 (all data & tools)

Compound ID: 3725

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Compound ID: 3726

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Compound ID: 3735

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Structure type: oligomer
Trivial name: lacto-N-neofucopentaose
Reference(s) to other database(s): GTC:G76691AS, GlycomeDB:1599

Glycoconjugate Journal 2001, "In vivo fucosylation of lacto-N-neotetraose and lacto-N-neohexaose by heterologous expression of Helicobacter pylori a-1,3 fucosyltransferase in engineered Escherichia coli"
CSDB ID 6596 (all data & tools)
Compound ID: 3736

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Structure type: oligomer
Trivial name: lacto-N-neodifucohexaose
Reference(s) to other database(s): GTC:G63389KA, GlycomeDB:5686

Glycoconjugate Journal 2001, "In vivo fucosylation of lacto-N-neotetraose and lacto-N-neohexaose by heterologous expression of Helicobacter pylori a-1,3 fucosyltransferase in engineered Escherichia coli"
CSDB ID 6616 (all data & tools)

Compound ID: 3737

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Compound ID: 1598

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Compound ID: 3778

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Compound ID: 3783

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Compound ID: 3784

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Compound ID: 3872

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Compound ID: 3873

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Compound ID: 3875

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Structure type: oligomer
Aglycon: (1->3) inner core
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G14695QL

Progress in Clinical and Biological Research 1998, "Core structures of enterobacterial lipopolysaccharides"
CSDB ID 31766 (all data & tools)

Compound ID: 4008

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Compound ID: 4245

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Compound ID: 4252

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Compound ID: 4300

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Compound ID: 4313

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Compound ID: 4480

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Structure type: oligomer
Compound class: peptidoglycan
Reference(s) to other database(s): CCSD:35779

BOOK: Antibiotics and antiviral compounds: chemical synthesis and modification; Eds.: Krohn K, Kirst HA, Maag H; Weinheim, New York: VCH 1993, "Transglycosylase inhibition"
CSDB ID 103840 (all data & tools)
Compound ID: 266

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Structure type: suggested polymer biological repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G42214IC, GlycomeDB:25593

Biochemistry 1993, "Probing the combining site of an anti-carbohydrate antibody by saturation-mutagenesis: role of the heavy-chain CDR3 residues"
CSDB ID 107890 (all data & tools)
Compound ID: 4436

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Structure type: polymer chemical repeating unit
Trivial name: colominic acid, Japanese common char (Salvelinus leucomaenis pluvius)
Compound class: CPS, O-glycoprotein, polysialate
Reference(s) to other database(s): GTC:G74009LP, GlycomeDB:660

Biopolymers 1993, "The preparation and characterization of a twin-tailed, lipid-linked polysialic acid"
CSDB ID 111111 (all data & tools)
Compound ID: 5524

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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G50829SS, GlycomeDB:7632

European Journal of Biochemistry 1973, "Enzymic degradation of O-antigenic lipopolysaccharides by coliphage OMEGA 8"
CSDB ID 122393 (all data & tools)
Compound ID: 5773

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Structure type: oligomer
Aglycon: Ceramide
Trivial name: glycosphingolipid
Compound class: glycolipid
Reference(s) to other database(s): GlycomeDB:9468

Infection and Immunity 1981, "Glycolipid receptors for uropathogenic Escherichia coli on human erythrocytes and uroepithelial cells"
CSDB ID 130161 (all data & tools)
Compound ID: 5779

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Structure type: oligomer
Reference(s) to other database(s): GTC:G59222MP

Infection and Immunity 1989, "Ganglioside epitope recognized by K99 fimbriae from enterotoxigenic Escherichia coli"
CSDB ID 130227 (all data & tools)
Compound ID: 5780

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Structure type: oligomer
Aglycon: Ceramide
Trivial name: GM3, II3NeuAc-Lac-Cer
Compound class: ganglioside
Reference(s) to other database(s): GlycomeDB:146

Infection and Immunity 1989, "Ganglioside epitope recognized by K99 fimbriae from enterotoxigenic Escherichia coli"
CSDB ID 130228 (all data & tools)
Compound ID: 5781

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Structure type: oligomer
Aglycon: Ceramide
Trivial name: GM3-NeuGc, II3NeuGc-Lac-Cer
Compound class: ganglioside

Infection and Immunity 1989, "Ganglioside epitope recognized by K99 fimbriae from enterotoxigenic Escherichia coli"
CSDB ID 130229 (all data & tools)
Compound ID: 5782

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Structure type: oligomer
Aglycon: Ceramide
Trivial name: GM3-Neu4Ac5Gc
Compound class: ganglioside

Infection and Immunity 1989, "Ganglioside epitope recognized by K99 fimbriae from enterotoxigenic Escherichia coli"
CSDB ID 130230 (all data & tools)
Compound ID: 5783

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Structure type: oligomer
Aglycon: Ceramide
Trivial name: 3'-LM1-NeuGc
Compound class: ganglioside

Infection and Immunity 1989, "Ganglioside epitope recognized by K99 fimbriae from enterotoxigenic Escherichia coli"
CSDB ID 130232 (all data & tools)
Compound ID: 5784

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Structure type: oligomer
Aglycon: Ceramide
Trivial name: VI3NeuGc-nLc6-Cer
Compound class: ganglioside

Infection and Immunity 1989, "Ganglioside epitope recognized by K99 fimbriae from enterotoxigenic Escherichia coli"
CSDB ID 130233 (all data & tools)
Compound ID: 5951

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Structure type: oligomer
Aglycon: (P->P) C55-P, (->1) undecaprenyl monophosphate
Trivial name: enterobacterial common antigen
Compound class: LPS
Reference(s) to other database(s): GlycomeDB:10706

Journal of Biological Chemistry 1990, "Biosynthesis of enterobacterial common antigen in Escherichia coli. Biochemical characterization of Tn10 insertion mutants defective in enterobacterial common antigen synthesis"
CSDB ID 135922 (all data & tools)
Compound ID: 5954

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Structure type: oligomer
Compound class: peptidoglycan
Reference(s) to other database(s): GTC:G84834YO

Journal of Biological Chemistry 1990, "Growth pattern of the murein sacculus of Escherichia coli"
CSDB ID 135959 (all data & tools)
Compound ID: 5971

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Structure type: oligomer
Trivial name: muramyl peptide
Compound class: peptidoglycan
Reference(s) to other database(s): CCSD:49380

Journal of Biological Chemistry 1992, "A murein hydrolase is the specific target of Bulgecin in Escherichia coli"
CSDB ID 136414 (all data & tools)

Microbiology 1994, "Alterations of murein structure and of penicillin-binding proteins in minicells from Escherichia coli"
CSDB ID 143645 (all data & tools)

Compound ID: 6022

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Compound ID: 6053

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Structure type: oligomer
Compound class: LPS
Reference(s) to other database(s): GTC:G89420DK, GlycomeDB:11342

Journal of Chromatography 1986, "Quantification of 2-keto-3-deoxyoctonate in (lipo)polysaccharides by methanolytic release, trifluoroacetylation and capillary gas chromatography"
CSDB ID 138790 (all data & tools)
Compound ID: 6054

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Structure type: oligomer
Compound class: LPS
Reference(s) to other database(s): GTC:G07426IU, GlycomeDB:11343

Journal of Chromatography 1986, "Quantification of 2-keto-3-deoxyoctonate in (lipo)polysaccharides by methanolytic release, trifluoroacetylation and capillary gas chromatography"
CSDB ID 138791 (all data & tools)

Compound ID: 6114

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Compound ID: 6115

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Compound ID: 6116

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Compound ID: 5969

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Compound ID: 5685

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Compound ID: 6117

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Compound ID: 2197

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Structure type: oligomer
Reference(s) to other database(s): GTC:G09579CP

Journal of Organic Chemistry 1994, "Large scale production of recombinant a-1,2-mannosyltransferase from E. coli for the study of acceptor specificity and use of the recombinant whole cells in synthesis"
CSDB ID 141618 (all data & tools)
Compound ID: 6120

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Structure type: oligomer
Reference(s) to other database(s): GlycomeDB:278

Journal of Organic Chemistry 1994, "Large scale production of recombinant a-1,2-mannosyltransferase from E. coli for the study of acceptor specificity and use of the recombinant whole cells in synthesis"
CSDB ID 141619 (all data & tools)
Compound ID: 6121

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Structure type: oligomer
Compound class: O-glycoprotein

Journal of Organic Chemistry 1994, "Large scale production of recombinant a-1,2-mannosyltransferase from E. coli for the study of acceptor specificity and use of the recombinant whole cells in synthesis"
CSDB ID 141631 (all data & tools)
Compound ID: 6122

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Structure type: oligomer
Compound class: O-glycoprotein

Journal of Organic Chemistry 1994, "Large scale production of recombinant a-1,2-mannosyltransferase from E. coli for the study of acceptor specificity and use of the recombinant whole cells in synthesis"
CSDB ID 141633 (all data & tools)

Compound ID: 6155

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Compound ID: 6156

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Structure type: oligomer
Compound class: peptidoglycan
Reference(s) to other database(s): CCSD:49379

Microbiology 1994, "Alterations of murein structure and of penicillin-binding proteins in minicells from Escherichia coli"
CSDB ID 143643 (all data & tools)
Compound ID: 6157

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Structure type: oligomer
Compound class: peptidoglycan
Reference(s) to other database(s): CCSD:49381

Microbiology 1994, "Alterations of murein structure and of penicillin-binding proteins in minicells from Escherichia coli"
CSDB ID 143644 (all data & tools)
Compound ID: 4415

-3)-b-D-Glcp-(1- Show graphically

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Structure type: homopolymer
Trivial name: glucan, β-1,3-glucan, curdlan, curdlan-type polysaccharide 13140, paramylon, curdlan, laminarin, β-glucan, curdlan, β-(1,3)-glucan, β-(1,3)-glucan, curdlan, curdlan, β-1,3-glucan, paramylon, reserve polysaccharide, b-glucan, β-1,3-D-glucan, laminaran, botryosphaeran, laminaran type β-D-glucan, latiglucan I, pachymaran, Curdlan, zymosan A, β-glucan, curdlan, laminarin, zymosan, zymosan, glucan particles, zymosan, β-(1-3)-glucan, β-(1,3)-glucan, β-(1,3)glucan, pachymaran, D-glucan (DPn)540, pachyman, laminaran, curdlan, zymosan, zymosan, β-(1,3)-glucan, zymosan A, zymosan, β-1,3-glucan, curdlan, β-1,3-glucan, curdlan, β-1,3-glucan, curdlan, pachyman, β-(1,3)-glucan, curdlan, callose, a water-insoluble β-(1→3)-glucan, fermentum β-polysaccharide, water-insoluble glucan, alkali-soluble β-glucan (PeA3), alkali-soluble polysaccharide (PCAP), callose, laminarin
Compound class: EPS, O-polysaccharide, cell wall polysaccharide, lipophosphoglycan, glycoprotein, LPG, glucan, polysaccharide, glycoside, β-glucan, β3-glucan, cell wall glucan
Reference(s) to other database(s): GTC:G51056AN, GlycomeDB:157, CCSD:50049, CBank-STR:4225, CA-RN: 51052-65-4, GenDB:FJ3380871.1

Microbiology 1995, "Four glucosyltransferases, GtfJ, GtfK, GtfL and GtfM, from Streptococcus salivarius ATCC 25975"
CSDB ID 143679 (all data & tools)
Compound ID: 6167

-6)-b-D-Glcp-(1- Show graphically

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Structure type: homopolymer
Trivial name: pustulan, β-1,6-glucan, β-1,6-D-glucan, β(1-6)-D-glucan, β-(1,6)-glucan, lasiodiplodan, pustulan, β-(1,6)-glucan, lasiodiplodan, β-(1,6)-glucan, β-(1,6)-glucan, lasiodiplodan, pustulan, β-1,6-glucan, β-(1,6)-glucan, pustulan, β-(1→6)-glucan PCPS, water-soluble glucan (PS-I)
Compound class: EPS, O-polysaccharide, cell wall polysaccharide, glycoprotein, glucan, polysaccharide, cell wall glucoprotein
Reference(s) to other database(s): GTC:G26777BZ, GlycomeDB:863, CCSD:50854, CBank-STR:4234

Microbiology 1995, "Four glucosyltransferases, GtfJ, GtfK, GtfL and GtfM, from Streptococcus salivarius ATCC 25975"
CSDB ID 143680 (all data & tools)
Compound ID: 6168

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Structure type: polymer chemical repeating unit
Reference(s) to other database(s): GTC:G73210JL, GlycomeDB:12038

Microbiology 1995, "Four glucosyltransferases, GtfJ, GtfK, GtfL and GtfM, from Streptococcus salivarius ATCC 25975"
CSDB ID 143681 (all data & tools)
Compound ID: 6205

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Structure type: oligomer
Compound class: LPS
Reference(s) to other database(s): GTC:G06373VZ, GlycomeDB:12093

Molecular Microbiology 1993, "The genus-specific lipopolysaccharide epitope of Chlamydia is assembled in C. psittaci and C. trachomatis by glycosyltransferases of low homology"
CSDB ID 144075 (all data & tools)
Compound ID: 6242

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Structure type: oligomer

Science 1993, "A covalent enzyme-substrate intermediate with saccharide distortion in a mutant T4 lysozyme"
CSDB ID 148381 (all data & tools)

Compound ID: 6332

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Compound ID: 6344

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Compound ID: 6466

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Compound ID: 844

-8)-a-Neup5Ac-(2- Show graphically

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Structure type: homopolymer
Trivial name: colominic acid sodium salt, colominic acid, type B polysaccharide, polysialic acid, PSA, oligosaccharide repeating unit, α-2,8-linked polysialic acid
Compound class: CPS, O-polysaccharide, K-antigen, O-antigen
Reference(s) to other database(s): GTC:G30588ZL, GlycomeDB:677

Biochemical and Biophysical Research Communications 1994, "Regulation of alternative pathway complement activation by glycosaminoglycans: specificity of the polyanion binding site on Factor H"
CSDB ID 105693 (all data & tools)

Frontiers in Immunology 2014, "Crossroads between Bacterial and Mammalian Glycosyltransferases"
CSDB ID 30221 (all data & tools)
Compound ID: 6551

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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G97024RO, GlycomeDB:28657

Carbohydrate Research 1994, "Structural studies of the Escherichia coli O90 O-antigen polysaccharide"
CSDB ID 218176 (all data & tools)

Compound ID: 6658

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Compound ID: 6673

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Compound ID: 6674

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Compound ID: 6689

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Compound ID: 6938

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Compound ID: 6939

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Compound ID: 6940

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Compound ID: 7089

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Structure type: oligomer
Trivial name: hyaluronan
Reference(s) to other database(s): GTC:G30666MK, GlycomeDB:17783

Carbohydrate Research 2006, "Complete assignment of hyaluronan oligosaccharides up to hexasaccharides"
CSDB ID 20007 (all data & tools)
Compound ID: 7090

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Structure type: oligomer
Trivial name: hyaluronan, polysaccharide peptide HAd
Compound class: PSP
Reference(s) to other database(s): GTC:G86299UP, GlycomeDB:19498

Carbohydrate Research 2006, "Complete assignment of hyaluronan oligosaccharides up to hexasaccharides"
CSDB ID 20301 (all data & tools)
Compound ID: 7091

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Structure type: oligomer
Trivial name: hyaluronan
Reference(s) to other database(s): GTC:G51352HP, GlycomeDB:17865

Carbohydrate Research 2006, "Complete assignment of hyaluronan oligosaccharides up to hexasaccharides"
CSDB ID 20302 (all data & tools)
Compound ID: 7092

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Structure type: oligomer
Trivial name: hyaluronan
Reference(s) to other database(s): GTC:G68185CW

Carbohydrate Research 2006, "Complete assignment of hyaluronan oligosaccharides up to hexasaccharides"
CSDB ID 20303 (all data & tools)
Compound ID: 7093

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Structure type: oligomer
Trivial name: hyaluronan
Reference(s) to other database(s): GTC:G58804BL

Carbohydrate Research 2006, "Complete assignment of hyaluronan oligosaccharides up to hexasaccharides"
CSDB ID 20304 (all data & tools)
Compound ID: 7094

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Structure type: oligomer
Trivial name: hyaluronan
Reference(s) to other database(s): GTC:G20544UR

Carbohydrate Research 2006, "Complete assignment of hyaluronan oligosaccharides up to hexasaccharides"
CSDB ID 20305 (all data & tools)
Compound ID: 7095

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Structure type: oligomer
Trivial name: hyaluronan

Carbohydrate Research 2006, "Complete assignment of hyaluronan oligosaccharides up to hexasaccharides"
CSDB ID 20306 (all data & tools)
Compound ID: 3699

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Structure type: oligomer
Aglycon: lipid IVA
Trivial name: intermediate Kdo2-lipidIVA
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G36348JQ, GlycomeDB:5576

Journal of Biological Chemistry 2006, "Expression Cloning of Three Rhizobium leguminosarum Lipopolysaccharide Core Galacturonosyltransferases"
CSDB ID 20324 (all data & tools)
Compound ID: 7125

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Structure type: oligomer
Aglycon: lipid IVA
Trivial name: intermediate lipid A
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G98894HY, GlycomeDB:27926

Journal of Biological Chemistry 2006, "Expression Cloning of Three Rhizobium leguminosarum Lipopolysaccharide Core Galacturonosyltransferases"
CSDB ID 20325 (all data & tools)

Compound ID: 7126

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Compound ID: 7127

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Compound ID: 7158

a-D-Manp-(1-P Show graphically

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Structure type: monomer
Trivial name: componente of O-antigen, D-mannose-1-phosphate
Reference(s) to other database(s): GlycomeDB:471

Protein Science 2006, "The structure of GDP-4-keto-6-deoxy-D-mannose-3-dehydratase: A unique coenzyme B6-dependent enzyme"
CSDB ID 20067 (all data & tools)
Compound ID: 7159

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Structure type: monomer
Trivial name: componente of O-antigen, GDP-mannose, GDP-α-D-mannose, GDP-D-Man
Compound class: nucleoside diphosphate sugar

Protein Science 2006, "The structure of GDP-4-keto-6-deoxy-D-mannose-3-dehydratase: A unique coenzyme B6-dependent enzyme"
CSDB ID 20353 (all data & tools)
Compound ID: 7160

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Structure type: monomer
Trivial name: componente of O-antigen
Compound class: nucleoside diphosphate sugar

Protein Science 2006, "The structure of GDP-4-keto-6-deoxy-D-mannose-3-dehydratase: A unique coenzyme B6-dependent enzyme"
CSDB ID 20354 (all data & tools)
Compound ID: 7161

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Structure type: monomer
Trivial name: componente of O-antigen, GDP-6-deoxy-D-lyxo-hexos-4-ulose
Compound class: nucleoside diphosphate sugar

Protein Science 2006, "The structure of GDP-4-keto-6-deoxy-D-mannose-3-dehydratase: A unique coenzyme B6-dependent enzyme"
CSDB ID 20355 (all data & tools)
Compound ID: 1606

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Structure type: monomer
Trivial name: componente of O-antigen, GDP-L-colitose
Compound class: nucleoside diphosphate sugar

Protein Science 2006, "The structure of GDP-4-keto-6-deoxy-D-mannose-3-dehydratase: A unique coenzyme B6-dependent enzyme"
CSDB ID 20356 (all data & tools)
Compound ID: 7224

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Structure type: oligomer
Aglycon: lipid A
Trivial name: Kdo2-lipid A
Reference(s) to other database(s): GTC:G47854XE, GlycomeDB:27878

Journal of Lipid Research 2006, "Kdo2-lipid A of Escherichia coli, a defined endotoxin that activates macrophages via TLR-4"
CSDB ID 20121 (all data & tools)
Compound ID: 260

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Structure type: oligomer
Reference(s) to other database(s): GlycomeDB:268

Carbohydrate Research 2006, "Sequence determination of oligosaccharides and regular polysaccharides using NMR spectroscopy and a novel Web-based version of the computer program casper"
CSDB ID 20123 (all data & tools)
Compound ID: 7231

P-6)-D-Fru Show graphically

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Structure type: monomer
Reference(s) to other database(s): GTC:G48268AX, GlycomeDB:27879

Chemistry and Biology 2006, "An In Vitro Screen of Bacterial Lipopolysaccharide Biosynthetic Enzymes Identifies an Inhibitor of ADP-Heptose Biosynthesis"
CSDB ID 20124 (all data & tools)
Compound ID: 7232

P-5)-D-Rib Show graphically

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Structure type: monomer
Reference(s) to other database(s): GTC:G49668AP, GlycomeDB:27976

Chemistry and Biology 2006, "An In Vitro Screen of Bacterial Lipopolysaccharide Biosynthetic Enzymes Identifies an Inhibitor of ADP-Heptose Biosynthesis"
CSDB ID 20418 (all data & tools)
Compound ID: 4319

P-7)-D-gro-D-manHep Show graphically

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Structure type: monomer
Trivial name: D-glycero-D-manno-heptose-7-phosphate
Reference(s) to other database(s): GTC:G37889CH, GlycomeDB:27767

Chemistry and Biology 2006, "An In Vitro Screen of Bacterial Lipopolysaccharide Biosynthetic Enzymes Identifies an Inhibitor of ADP-Heptose Biosynthesis"
CSDB ID 20419 (all data & tools)

Bioorganic and Medicinal Chemistry 2008, "Towards Gram-negative antivirulence drugs: New inhibitors of HldE kinase"
CSDB ID 23425 (all data & tools)
Compound ID: 7233

P-4)-Ery Show graphically

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Structure type: monomer
Reference(s) to other database(s): GTC:G56540ZK

Chemistry and Biology 2006, "An In Vitro Screen of Bacterial Lipopolysaccharide Biosynthetic Enzymes Identifies an Inhibitor of ADP-Heptose Biosynthesis"
CSDB ID 20420 (all data & tools)
Compound ID: 7234

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Structure type: monomer
Reference(s) to other database(s): GlycomeDB:27978

Chemistry and Biology 2006, "An In Vitro Screen of Bacterial Lipopolysaccharide Biosynthetic Enzymes Identifies an Inhibitor of ADP-Heptose Biosynthesis"
CSDB ID 20421 (all data & tools)
Compound ID: 7235

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Structure type: monomer
Reference(s) to other database(s): GlycomeDB:27978

Chemistry and Biology 2006, "An In Vitro Screen of Bacterial Lipopolysaccharide Biosynthetic Enzymes Identifies an Inhibitor of ADP-Heptose Biosynthesis"
CSDB ID 20422 (all data & tools)
Compound ID: 7236

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Structure type: monomer
Reference(s) to other database(s): GlycomeDB:27982

Chemistry and Biology 2006, "An In Vitro Screen of Bacterial Lipopolysaccharide Biosynthetic Enzymes Identifies an Inhibitor of ADP-Heptose Biosynthesis"
CSDB ID 20429 (all data & tools)
Compound ID: 7240

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Structure type: oligomer
Aglycon: (1->3) lipid A
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G68489YV, GlycomeDB:26361

FASEB Journal 1994, "Bacterial endotoxin: Molecular relationships of structure to activity and function"
CSDB ID 22447 (all data & tools)

Compound ID: 7241

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Compound ID: 7242

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Compound ID: 7243

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Structure type: oligomer
Aglycon: (1->3) lipid A
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G14695QL, GlycomeDB:27159

FASEB Journal 1994, "Bacterial endotoxin: Molecular relationships of structure to activity and function"
CSDB ID 22450 (all data & tools)

Compound ID: 7541

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Compound ID: 7576

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Compound ID: 7577

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Compound ID: 7679

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Compound ID: 7512

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Structure type: monomer
Trivial name: ADP-D-glycero-D-manno-heptose (ADP-DDHep), ADP-D-glycero-β-D-manno-heptose
Reference(s) to other database(s): GlycomeDB:25347

Bioorganic and Medicinal Chemistry 2008, "Towards Gram-negative antivirulence drugs: New inhibitors of HldE kinase"
CSDB ID 23512 (all data & tools)
Compound ID: 8480

b-Kdop-(2--P--5)--C Show graphically

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Structure type: monomer
Trivial name: CMP-Kdo

Journal of Biological Chemistry 2009, "Structure-based mechanism of CMP-2-keto-3-deoxy-manno-octulonic acid synthetase: convergent evolution of a sugar-activating enzyme with DNA/RNA polymerases"
CSDB ID 23711 (all data & tools)
Compound ID: 8551

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Structure type: homopolymer
Trivial name: PNAG, polysaccharide intercellular adhesin (PIA)
Compound class: EPS
Reference(s) to other database(s): GTC:G11006VI

Carbohydrate Research 2009, "Efficient synthesis and protein conjugation of β-(1→6)-d-N-acetylglucosamine oligosaccharides from the polysaccharide intercellular adhesin"
CSDB ID 24080 (all data & tools)

Compound ID: 8665

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Compound ID: 7938

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Structure type: monomer
Trivial name: UDP-α-D-galactofuranose, UDP-galactofuranose
Compound class: nucleoside diphosphate sugar

Chembiochem: a European Journal of Chemical Biology 2009, "Chemistry and biology of galactofuranose-containing polysaccharides"
CSDB ID 24199 (all data & tools)
Compound ID: 8721

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Structure type: monomer
Compound class: lipid A

Biochemistry 2009, "Biosynthesis of undecaprenyl phosphate-galactosamine and undecaprenyl phosphate-glucose in Francisella novicida"
CSDB ID 31236 (all data & tools)

Compound ID: 8853

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Compound ID: 8886

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Compound ID: 8934

-6)-b-D-GlcpNAc-(1- Show graphically

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Structure type: homopolymer ; n=5,9
Aglycon: spacer
Trivial name: PNAG
Compound class: EPS
Reference(s) to other database(s): GTC:G11006VI, GlycomeDB:11210

Infection and Immunity 2010, "Synthetic b-(1->6)-linked N-acetylated and non-acetylated oligoglucosamines to produce conjugate vaccines for bacterial pathogens"
CSDB ID 25253 (all data & tools)
Compound ID: 8935

-6)-b-D-GlcpN-(1- Show graphically

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Structure type: homopolymer ; n=5,9
Aglycon: spacer
Trivial name: PNAG
Compound class: EPS
Reference(s) to other database(s): GTC:G30568EB, GlycomeDB:27802

Infection and Immunity 2010, "Synthetic b-(1->6)-linked N-acetylated and non-acetylated oligoglucosamines to produce conjugate vaccines for bacterial pathogens"
CSDB ID 25650 (all data & tools)

Compound ID: 8971

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Compound ID: 9299

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Compound ID: 9429

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Compound ID: 9488

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Compound ID: 9489

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Compound ID: 9544

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Compound ID: 9678

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Structure type: fragment of a bigger structure
Aglycon: lipid A
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G41560CU

Mendeleev Communications 2011, "Higher aldulosonic acids: components of bacterial glycans"
CSDB ID 31089 (all data & tools)
Compound ID: 9713

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Structure type: polymer chemical repeating unit
Trivial name: Enterobacterial common antigen (ECA)
Reference(s) to other database(s): GTC:G90704QO

Analytical Biochemistry 2011, "Development of mass cytometry methods for bacterial discrimination"
CSDB ID 26268 (all data & tools)
Compound ID: 10275

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Structure type: oligomer
Aglycon: trimethylsylilethyl (instead of natural Cer)
Trivial name: GbO4

Cell 2001, "Structural basis of the interaction of the pyelonephritic E. coli adhesin to its human kidney receptor"
CSDB ID 11432 (all data & tools)

Compound ID: 10640

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Compound ID: 11092

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Structure type: oligomer
Aglycon: 5-aminopentyl
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G07682RX

Angewandte Chemie, International Edition 2013, "Plague detection by anti-carbohydrate antibodies"
CSDB ID 29427 (all data & tools)

Compound ID: 11130

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Compound ID: 11138

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Compound ID: 11486

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Compound ID: 11512

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Compound ID: 11800

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Compound ID: 11801

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Structure type: monomer ; 305.0634 [M+H]+
C8H18O10P
Trivial name: Hep4P

Journal of Organic Chemistry 2014, "Convergent synthesis of 4-O-phosphorylated L-glycero-D-manno-heptosyl lipopolysaccharide core oligosaccharides based on regioselective cleavage of a 6,7-O-tetraisopropyldisiloxane-1,3-diyl protecting group"
CSDB ID 30467 (all data & tools)
Compound ID: 11802

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Structure type: oligomer ; 495.1122 [M-H]-
C15H27O16P
Compound class: core oligosaccharide

Journal of Organic Chemistry 2014, "Convergent synthesis of 4-O-phosphorylated L-glycero-D-manno-heptosyl lipopolysaccharide core oligosaccharides based on regioselective cleavage of a 6,7-O-tetraisopropyldisiloxane-1,3-diyl protecting group"
CSDB ID 30468 (all data & tools)
Compound ID: 11803

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Structure type: oligomer ; 465.1013 [M-H]-
C14H26O15P
Compound class: core oligosaccharide

Journal of Organic Chemistry 2014, "Convergent synthesis of 4-O-phosphorylated L-glycero-D-manno-heptosyl lipopolysaccharide core oligosaccharides based on regioselective cleavage of a 6,7-O-tetraisopropyldisiloxane-1,3-diyl protecting group"
CSDB ID 30469 (all data & tools)
Compound ID: 11804

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Structure type: oligomer ; 495.1122 [M-H]-
C15H28O16P
Compound class: core oligosaccharide

Journal of Organic Chemistry 2014, "Convergent synthesis of 4-O-phosphorylated L-glycero-D-manno-heptosyl lipopolysaccharide core oligosaccharides based on regioselective cleavage of a 6,7-O-tetraisopropyldisiloxane-1,3-diyl protecting group"
CSDB ID 30470 (all data & tools)

Compound ID: 11805

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Compound ID: 11887

-2)-b-Glc-(1- Show graphically

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Structure type: homopolymer
Reference(s) to other database(s): GTC:G60508RJ

Trends in Glycoscience and Glycotechnology 2000, "The biosynthesis of β-glycans"
CSDB ID 40833 (all data & tools)
Compound ID: 12079

-6)-b-D-GlcpNAc-(1- Show graphically

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Structure type: homopolymer ; n=9
Aglycon: 3-(4-(acetylthio)butyrylamino)propyl or spacer + carrier protein (Tetanus Toxoid)
Trivial name: PNAG
Reference(s) to other database(s): GTC:G11006VI

Carbohydrate Research 2015, "Surface polysaccharides from Acinetobacter baumannii: Structures and syntheses"
CSDB ID 30956 (all data & tools)

Compound ID: 12432

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Compound ID: 12793

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Compound ID: 13025

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Compound ID: 13297

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Structure type: polymer chemical repeating unit
Compound class: EPS, glucan
Reference(s) to other database(s): GTC:G06401NN

Current Medicinal Chemistry 2013, "An overview on natural polysaccharides with antioxidant properties"
CSDB ID 47195 (all data & tools)
Compound ID: 13663

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Structure type: fragment of a bigger structure
Compound class: CPS
Reference(s) to other database(s): GTC:G02109KF

Journal of the American Chemical Society 2019, "High-Throughput 'FP-Tag' Assay for the Identification of Glycosyltransferase Inhibitors"
CSDB ID 1011 (all data & tools)

Compound ID: 1820

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Compound ID: 14276

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Compound ID: 14540

R-3HOMyr-(1-2)-+ | Lau-(1-3)-R-3HOMyr-(1-2)-+ | | | a-D-Galp-(1-2)-a-D-Galp-(1-2)-+ L-gro-a-D-manHepp-(1-7)-+ EtN-(1---P---P---4)-+ a-Kdop-(2-4)-+ | | | | | | | | {{{-a-D-Fucp4NAc-(1-4)-b-D-ManpNAcA-(1-4)-a-D-GlcpNAc-(1-3)-}}}/n=9/-a-D-Fucp4NAc-(1-4)-b-D-ManpNAcA-(1-4)-b-D-GlcpNAc-(1-3)-b-D-Glcp-(1-3)-a-D-Glcp-(1-3)-a-D-Glcp-(1-3)-L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P | | | P-4)-+ Myr-(1-3)-R-3HOMyr-(1-3)-+ | | R-3HOMyr-(1-3)-+

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Compound ID: 15709

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Compound ID: 15757

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Structure type: oligomer
Trivial name: glycosylglycerolipid

Methods in Molecular Biology 2021, "Structural Analysis of Glycosylglycerolipids Using NMR Spectroscopy"
CSDB ID 5880 (all data & tools)
Compound ID: 15758

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Structure type: oligomer
Trivial name: glycosylglycerolipid

Methods in Molecular Biology 2021, "Structural Analysis of Glycosylglycerolipids Using NMR Spectroscopy"
CSDB ID 5881 (all data & tools)

Compound ID: 15883

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Compound ID: 16008

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Structure type: polymer chemical repeating unit
Trivial name: phosphoethanolamine cellulose
Compound class: EPS

Chemical Reviews 2022, "Chemical reporters for bacterial glycans: development and applications"
CSDB ID 20835 (all data & tools)
Compound ID: 16071

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Structure type: polymer chemical repeating unit
Trivial name: ECA
Compound class: enterobacterial common antigen

Chemical Reviews 2022, "Synthetic Glycans to Improve Current Glycoconjugate Vaccines and Fight Antimicrobial Resistance"
CSDB ID 20921 (all data & tools)
Compound ID: 16072

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Structure type: oligomer
Aglycon: spacer-BSA
Trivial name: ECA
Compound class: enterobacterial common antigen

Chemical Reviews 2022, "Synthetic Glycans to Improve Current Glycoconjugate Vaccines and Fight Antimicrobial Resistance"
CSDB ID 20922 (all data & tools)

Compound ID: 16280

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Compound ID: 6326

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Compound ID: 16398

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Compound ID: 9430

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Compound ID: 16629

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Compound ID: 16646

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Compound ID: 16657

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Compound ID: 13550

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Structure type: polymer chemical repeating unit
Trivial name: hyaluronan, hyaluronic acid
Compound class: CPS, EPS, glucan, polysaccharide
Reference(s) to other database(s): GTC:G16235VG

Microbial Cell Factories 2015, "The sweet branch of metabolic engineering: cherry-picking the low-hanging sugary fruits"
CSDB ID 48505 (all data & tools)
Compound ID: 21336

b-D-GlcpN(%)Ac Show graphically

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Structure type: monomer
Reference(s) to other database(s): GTC:G49108TO

Journal of Biological Chemistry 2018, "Synthetic biology strategies for improving microbial synthesis of "green" biopolymers"
CSDB ID 48815 (all data & tools)

Expand this organism

4. (Organism ID: 17476)

Fusobacterium nucleatum

(NCBI TaxID 851, species name lookup)

Taxonomic group: bacteria
Phylum: Fusobacteriota

No compounds are assigned to this organism (you searched for an associated organism but selected a HOST organism; or this is a virtual organism)

Expand this organism

5. (Organism ID: 218)

Legionella pneumophila

(NCBI TaxID 446, species name lookup)

Taxonomic group: bacteria
Phylum: Proteobacteria

The following compound(s) are assigned to this organism:

Compound ID: 386

8eLeg5Ac7Ac Show graphically

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Structure type: monomer
Reference(s) to other database(s): GTC:G49224VH, GlycomeDB:37732

Mendeleev Communications 2000, "Synthesis of 5,7-diacetamido-3,5,7,9-tetradeoxy-L-glycero-D-galacto- and -L-glycero-D-talo-nonulosonic acids, putative components of bacterial lipopolysaccharide"
CSDB ID 5237 (all data & tools)
Compound ID: 387

b-Leg5Ac7Ac Show graphically

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Structure type: monomer
Reference(s) to other database(s): GTC:G16971DQ, GlycomeDB:25214

Carbohydrate Research 2001, "Synthesis and identification in bacterial lipopolysaccharides of 5,7-diacetamido-3,5,7,9-tetradeoxy-D-glycero-D-galacto- and -D-glycero-D-talo-nonulosonic acids"
CSDB ID 5238 (all data & tools)
Compound ID: 388

a-Leg5Ac7Ac Show graphically

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Structure type: monomer
Reference(s) to other database(s): GTC:G17144YF, GlycomeDB:25214

Carbohydrate Research 2001, "Synthesis and identification in bacterial lipopolysaccharides of 5,7-diacetamido-3,5,7,9-tetradeoxy-D-glycero-D-galacto- and -D-glycero-D-talo-nonulosonic acids"
CSDB ID 638 (all data & tools)
Compound ID: 479

a-4eLeg5Ac7Ac Show graphically

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Structure type: monomer
Reference(s) to other database(s): GTC:G22847IO

Carbohydrate Research 2001, "Synthesis and identification in bacterial lipopolysaccharides of 5,7-diacetamido-3,5,7,9-tetradeoxy-D-glycero-D-galacto- and -D-glycero-D-talo-nonulosonic acids"
CSDB ID 5338 (all data & tools)
Compound ID: 480

b-4eLeg5Ac7Ac Show graphically

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Structure type: monomer
Reference(s) to other database(s): GTC:G47958IN

Carbohydrate Research 2001, "Synthesis and identification in bacterial lipopolysaccharides of 5,7-diacetamido-3,5,7,9-tetradeoxy-D-glycero-D-galacto- and -D-glycero-D-talo-nonulosonic acids"
CSDB ID 639 (all data & tools)
Compound ID: 2529

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Structure type: homopolymer
Compound class: O-polysaccharide
Reference(s) to other database(s): GlycomeDB:33609

Biochemistry (Moscow) 2001, "Identification of a homopolymer of 5-acetamidino-7-acetamido-3,5,7,9-tetradeoxy-D-glycero-D-talo-nonulosonic acid in the lipopolysaccharides of Legionella pneumophila non-1 serogroups"
CSDB ID 2919 (all data & tools)

International Journal of Molecular Sciences 2021, "The Role of Lipids in Legionella-Host Interaction"
CSDB ID 10888 (all data & tools)

Compound ID: 3767

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Compound ID: 4020

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Compound ID: 4021

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Compound ID: 7811

b-Leg Show graphically

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Structure type: monomer
Trivial name: 5,7-diamino-3,5,7,9-tetradeoxy-D-glycero-β-D-galacto-non-2-ulosonic acid
Reference(s) to other database(s): GTC:G69897TQ

Biochemistry 2008, "Biosynthesis of CMP-N,N'-diacetyllegionaminic acid from UDP-N,N'-diacetylbacillosamine in Legionella pneumophila"
CSDB ID 22652 (all data & tools)
Compound ID: 7812

b-Leg5Ac7Ac Show graphically

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Structure type: monomer
Trivial name: 5,7-diacetamido-3,5,7,9-tetradeoxy-D-glycero-β-D-galacto-nonulosonic acid
Reference(s) to other database(s): GTC:G16971DQ

Biochemistry 2008, "Biosynthesis of CMP-N,N'-diacetyllegionaminic acid from UDP-N,N'-diacetylbacillosamine in Legionella pneumophila"
CSDB ID 22956 (all data & tools)
Compound ID: 7813

b-Leg5Am7Ac Show graphically

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Structure type: monomer
Trivial name: 5-acetamidino-7-acetamido-3,5,7,9-tetradeoxy-D-glycero-β-D-galacto-nonulosonic acid

Biochemistry 2008, "Biosynthesis of CMP-N,N'-diacetyllegionaminic acid from UDP-N,N'-diacetylbacillosamine in Legionella pneumophila"
CSDB ID 22957 (all data & tools)
Compound ID: 7814

a-Pse5Ac7Ac Show graphically

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Structure type: monomer
Trivial name: 5,7-diacetamido-3,5,7,9-tetradeoxy-L-glycero-α-L-manno-non-2-ulosonic acid
Reference(s) to other database(s): GTC:G81632YA

Biochemistry 2008, "Biosynthesis of CMP-N,N'-diacetyllegionaminic acid from UDP-N,N'-diacetylbacillosamine in Legionella pneumophila"
CSDB ID 22958 (all data & tools)
Compound ID: 7815

b-Neu5Ac Show graphically

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Structure type: monomer
Trivial name: 5-acetamido-5,3-dideoxy-D-glycero-β-D-galacto-oct-2-ulosonic acid
Reference(s) to other database(s): GTC:G96378AE

Biochemistry 2008, "Biosynthesis of CMP-N,N'-diacetyllegionaminic acid from UDP-N,N'-diacetylbacillosamine in Legionella pneumophila"
CSDB ID 22959 (all data & tools)
Compound ID: 6855

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Structure type: monomer
Trivial name: UDP-α-D-GlcNAc, UDP-N-acetyl-α-D-glucosamine, UDP-2-acetamido-2-deoxy-α-D-glucopyranose, UDP-2-acetamido-α-D-glucopyranose, UPD-2-acetamido-α-D-glucopyranose, UDP-GlcNAc
Compound class: nucleoside diphosphate sugar

Biochemistry 2008, "Biosynthesis of CMP-N,N'-diacetyllegionaminic acid from UDP-N,N'-diacetylbacillosamine in Legionella pneumophila"
CSDB ID 22960 (all data & tools)
Compound ID: 7816

a-D-Man2Ac Show graphically

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Structure type: monomer
Trivial name: 2-acetamido-2-deoxy-α-D-mannose
Reference(s) to other database(s): GTC:G11547BP

Biochemistry 2008, "Biosynthesis of CMP-N,N'-diacetyllegionaminic acid from UDP-N,N'-diacetylbacillosamine in Legionella pneumophila"
CSDB ID 22961 (all data & tools)
Compound ID: 7817

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Structure type: monomer
Trivial name: CMP-sialic acid

Biochemistry 2008, "Biosynthesis of CMP-N,N'-diacetyllegionaminic acid from UDP-N,N'-diacetylbacillosamine in Legionella pneumophila"
CSDB ID 22962 (all data & tools)
Compound ID: 7605

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Structure type: monomer
Trivial name: UDP-2,4-diacetamido-2,4,6-trideoxy-α-D-glucopyranose, UDP-2,4-diacetamido-Bacillose, UDP-N,N-diacetylbacillosamine, UPD-2,4-diacetamido-2,4,6-trideoxy-α-D-glucopyranose, UDP-N,N'-diacetyl-bacillosamine, UDP-Bac2Ac4Ac, UDP-diNAcBac
Compound class: nucleoside diphosphate sugar

Biochemistry 2008, "Biosynthesis of CMP-N,N'-diacetyllegionaminic acid from UDP-N,N'-diacetylbacillosamine in Legionella pneumophila"
CSDB ID 22963 (all data & tools)

Glycobiology 2011, "Enzymatic synthesis and properties of glycoconjugates with legionaminic acid as a replacement for neuraminic acid"
CSDB ID 27008 (all data & tools)
Compound ID: 7818

a-D-RhaNAc4NAc Show graphically

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Structure type: monomer
Trivial name: 2,4-diacetamido-2,4,6-trideoxymannose
Reference(s) to other database(s): GTC:G14692MG

Biochemistry 2008, "Biosynthesis of CMP-N,N'-diacetyllegionaminic acid from UDP-N,N'-diacetylbacillosamine in Legionella pneumophila"
CSDB ID 22964 (all data & tools)
Compound ID: 7508

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Structure type: monomer
Trivial name: CMP-5,7-diacetamido-3,5,7,9-tetradeoxy-D-glycero-D-galacto-non-2-ulosonic (CMP-Leg5Ac7AC), CMP-5,7-diacetamido-3,5,7,9-tetradeoxy-D-glycero-β-D-galacto-non-2-ulosonic acid, CMP-legionaminic acid, CMP-N,N'-diacetyllegionaminic acid, CMP-Leg5Ac7Ac

Biochemistry 2008, "Biosynthesis of CMP-N,N'-diacetyllegionaminic acid from UDP-N,N'-diacetylbacillosamine in Legionella pneumophila"
CSDB ID 22965 (all data & tools)

Glycobiology 2011, "Enzymatic synthesis and properties of glycoconjugates with legionaminic acid as a replacement for neuraminic acid"
CSDB ID 27009 (all data & tools)
Compound ID: 6857

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Structure type: monomer
Trivial name: UDP-hexos-4-ulose sugar, UDP-2-acetamido-2,6-dideoxy-α-D-xylo-hexos-4-ulose, UPD-2-acetamido-2,6-dideoxy-α-D-xylo-4-hexulose
Compound class: nucleoside diphosphate sugar

Biochemistry 2008, "Biosynthesis of CMP-N,N'-diacetyllegionaminic acid from UDP-N,N'-diacetylbacillosamine in Legionella pneumophila"
CSDB ID 22966 (all data & tools)
Compound ID: 6974

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Structure type: monomer
Trivial name: UDP-2-acetamido-2,4,6-trideoxy-α-D-glucopyranose, UPD-2-acetamido-4-amino-2,4,6-trideoxy-α-D-glucopyranose, UDP-2-N-acetyl-bacillosamine (UDP-Bac2Ac)
Compound class: nucleoside diphosphate sugar

Biochemistry 2008, "Biosynthesis of CMP-N,N'-diacetyllegionaminic acid from UDP-N,N'-diacetylbacillosamine in Legionella pneumophila"
CSDB ID 22967 (all data & tools)

Glycobiology 2011, "Enzymatic synthesis and properties of glycoconjugates with legionaminic acid as a replacement for neuraminic acid"
CSDB ID 26388 (all data & tools)
Compound ID: 2641

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Structure type: homopolymer
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GlycomeDB:33608

Carbohydrate Research 2019, "A versatile de novo synthesis of legionaminic acid and 4-epi-legionaminic acid starting from D-serine"
CSDB ID 1016 (all data & tools)

Chemical Reviews 2022, "Chemical reporters for bacterial glycans: development and applications"
CSDB ID 20821 (all data & tools)
Compound ID: 13668

4eLegp5Ac7Ac Show graphically

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Structure type: monomer ; 333.1303 [M-H]-
C13H21N2O8
Trivial name: 4-epi-legionaminic acid
Compound class: nonulosonic acid
Reference(s) to other database(s): GTC:G56205OY

Carbohydrate Research 2019, "A versatile de novo synthesis of legionaminic acid and 4-epi-legionaminic acid starting from D-serine"
CSDB ID 732 (all data & tools)

Compound ID: 14445

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Compound ID: 15048

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Compound ID: 16439

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6. (Organism ID: 704)

Neisseria gonorrhoeae

(NCBI TaxID 485, species name lookup)

Taxonomic group: bacteria
Phylum: Proteobacteria

The following compound(s) are assigned to this organism:

Compound ID: 1197

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Structure type: oligomer
Aglycon: Kdo-lipid A
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G78046UJ, GlycomeDB:27236

Journal of Endotoxin Research 2002, "Phase variable changes in genes lgtA and lgtC within the lgtABCDE operon of Neisseria gonorrhoeae can modulate gonococcal susceptibility to normal human serum"
CSDB ID 8303 (all data & tools)

Compound ID: 1198

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Compound ID: 1199

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Structure type: oligomer
Aglycon: Kdo-lipid A
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G74221AX, GlycomeDB:27246

Journal of Endotoxin Research 2002, "Phase variable changes in genes lgtA and lgtC within the lgtABCDE operon of Neisseria gonorrhoeae can modulate gonococcal susceptibility to normal human serum"
CSDB ID 8402 (all data & tools)

Compound ID: 953

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Compound ID: 2687

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Compound ID: 3103

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Structure type: oligomer
Aglycon: p-aminophenyl-HSA glycoconjugate
Trivial name: galabiose
Reference(s) to other database(s): GTC:G67988RO, GlycomeDB:587

Microbial Pathogenesis 1998, "Monoclonal antibodies to the epitope a-Gal-(1-4)-b-Gal-(1- of Moraxella catarrhalis LPS react with a similar epitope in type IV pili of Neisseria meningitidis"
CSDB ID 4305 (all data & tools)

Compound ID: 3644

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Compound ID: 3645

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Compound ID: 4027

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Compound ID: 4581

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Structure type: oligomer
Aglycon: Ceramide
Trivial name: glycosphingolipid
Compound class: LOS
Reference(s) to other database(s): GlycomeDB:3196

Biochemistry 1992, "Structural analysis of lipooligosaccharide produced by Neisseria gonorrhoeae, strain MS11mk (variant A): a precursor for a gonococcal lipooligosaccharide associated with virulence"
CSDB ID 107873 (all data & tools)

Compound ID: 4582

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Compound ID: 4583

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Compound ID: 4584

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Compound ID: 5760

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Structure type: structural motif or average structure
Compound class: LOS
Reference(s) to other database(s): GlycomeDB:1306

Immunobiology 1993, "Lipo-oligosaccharides (LOS) of mucosal pathogens: molecular mimicry and host-modification of LOS"
CSDB ID 129900 (all data & tools)
Compound ID: 5785

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Structure type: oligomer ; 910.36
Trivial name: muramyl peptide
Compound class: peptidoglycan
Reference(s) to other database(s): GlycomeDB:34108

Infection and Immunity 1989, "Somnogenic activity of O-acetylated and dimeric muramyl peptides"
CSDB ID 130238 (all data & tools)
Compound ID: 5786

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Structure type: oligomer ; 868.35
Trivial name: muramyl peptide
Compound class: peptidoglycan
Reference(s) to other database(s): GlycomeDB:34109

Infection and Immunity 1989, "Somnogenic activity of O-acetylated and dimeric muramyl peptides"
CSDB ID 130239 (all data & tools)

Compound ID: 5787

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Compound ID: 5818

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Structure type: oligomer
Aglycon: rest of molecule
Compound class: LOS
Reference(s) to other database(s): GTC:G00055MO, GlycomeDB:228

Infection and Immunity 1995, "Neisseria gonorrhoeae utilizes and enhances the biosynthesis of the asialoglycoprotein receptor expressed on the surface of the hepatic HepG2 cell line"
CSDB ID 130607 (all data & tools)

Compound ID: 6056

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Compound ID: 5259

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Compound ID: 6197

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Structure type: oligomer
Compound class: LOS
Reference(s) to other database(s): GTC:G82244GE, GlycomeDB:12083

Molecular Immunology 1991, "Epitope expression and partial structural characterization of F62 lipooligosaccharide (LOS) of Neisseria gonorrhoeae: IgM monoclonal antibodies (3F11 and 1-1-M) recognize non-reducing termini of the LOS components"
CSDB ID 144016 (all data & tools)
Compound ID: 6198

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Structure type: oligomer
Compound class: LOS
Reference(s) to other database(s): GTC:G71389FQ, GlycomeDB:12084

Molecular Immunology 1991, "Epitope expression and partial structural characterization of F62 lipooligosaccharide (LOS) of Neisseria gonorrhoeae: IgM monoclonal antibodies (3F11 and 1-1-M) recognize non-reducing termini of the LOS components"
CSDB ID 144017 (all data & tools)
Compound ID: 6417

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Structure type: structural motif or average structure
Trivial name: Lc3
Compound class: LPS

Immunobiology 1993, "Lipo-oligosaccharides (LOS) of mucosal pathogens: molecular mimicry and host-modification of LOS"
CSDB ID 229899 (all data & tools)

Compound ID: 6845

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Compound ID: 6846

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Compound ID: 10001

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Structure type: oligomer ; 981.40
Compound class: peptidoglycan, muramyl peptide
Reference(s) to other database(s): CCSD:23508, CBank-STR:1508

Infection and Immunity 1989, "Somnogenic activity of O-acetylated and dimeric muramyl peptides"
CSDB ID 130240 (all data & tools)
Compound ID: 10002

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Structure type: oligomer ; 920.40
Trivial name: muramyl peptide
Compound class: peptidoglycan

Infection and Immunity 1989, "Somnogenic activity of O-acetylated and dimeric muramyl peptides"
CSDB ID 230240 (all data & tools)

Compound ID: 10003

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Compound ID: 10004

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Structure type: oligomer ; 939.39
Trivial name: muramyl peptide
Compound class: peptidoglycan
Reference(s) to other database(s): CCSD:23509, CBank-STR:1500

Infection and Immunity 1989, "Somnogenic activity of O-acetylated and dimeric muramyl peptides"
CSDB ID 130241 (all data & tools)

Compound ID: 10005

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Compound ID: 10006

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Compound ID: 10008

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Compound ID: 10009

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Compound ID: 11106

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Structure type: oligomer
Aglycon: undecaprenyl diphosphate
Reference(s) to other database(s): GTC:G48627KH

Proceedings of the National Academy of Sciences of the USA 2011, "Genetic and molecular analyses reveal an evolutionary trajectory for glycan synthesis in a bacterial protein glycosylation system"
CSDB ID 29919 (all data & tools)
Compound ID: 11107

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Structure type: oligomer
Aglycon: undecaprenyl diphosphate
Reference(s) to other database(s): GTC:G23033AD

Proceedings of the National Academy of Sciences of the USA 2011, "Genetic and molecular analyses reveal an evolutionary trajectory for glycan synthesis in a bacterial protein glycosylation system"
CSDB ID 29435 (all data & tools)
Compound ID: 11227

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Structure type: oligomer
Aglycon: protein, undecaprenyl pyrophosphate
Trivial name: glycan
Reference(s) to other database(s): GTC:G27236WI

Biochemistry 2011, "Biochemical characterization of the O-linked glycosylation pathway in Neisseria gonorrhoeae responsible for biosynthesis of protein glycans containing N,N'-diacetylbacillosamine"
CSDB ID 29194 (all data & tools)
Compound ID: 7605

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Structure type: monomer
Trivial name: UDP-2,4-diacetamido-2,4,6-trideoxy-α-D-glucopyranose, UDP-2,4-diacetamido-Bacillose, UDP-N,N-diacetylbacillosamine, UPD-2,4-diacetamido-2,4,6-trideoxy-α-D-glucopyranose, UDP-N,N'-diacetyl-bacillosamine, UDP-Bac2Ac4Ac, UDP-diNAcBac
Compound class: nucleoside diphosphate sugar

Biochemistry 2011, "Biochemical characterization of the O-linked glycosylation pathway in Neisseria gonorrhoeae responsible for biosynthesis of protein glycans containing N,N'-diacetylbacillosamine"
CSDB ID 29540 (all data & tools)
Compound ID: 11228

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Structure type: oligomer
Aglycon: undecaprenyl pyrophosphate
Trivial name: Und-PP-diNAcBac-Gal
Reference(s) to other database(s): GTC:G23033AD

Biochemistry 2011, "Biochemical characterization of the O-linked glycosylation pathway in Neisseria gonorrhoeae responsible for biosynthesis of protein glycans containing N,N'-diacetylbacillosamine"
CSDB ID 29541 (all data & tools)
Compound ID: 11229

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Structure type: oligomer
Aglycon: undecaprenyl pyrophosphate
Trivial name: Und-PP-diNAcBac-Glc
Reference(s) to other database(s): GTC:G48627KH

Biochemistry 2011, "Biochemical characterization of the O-linked glycosylation pathway in Neisseria gonorrhoeae responsible for biosynthesis of protein glycans containing N,N'-diacetylbacillosamine"
CSDB ID 29542 (all data & tools)
Compound ID: 11352

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Structure type: oligomer
Aglycon: peptide
Compound class: O-glycan
Reference(s) to other database(s): GTC:G76186UI

Journal of Biological Chemistry 2013, "Biochemical analysis and structure determination of bacterial acetyltransferases responsible for the biosynthesis of UDP-N,N'-diacetylbacillosamine"
CSDB ID 29654 (all data & tools)

Compound ID: 13031

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Compound ID: 13032

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Compound ID: 15917

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Structure type: oligomer
Aglycon: core
Compound class: LOS

Frontiers in Microbiology 2021, "Opportunities and Challenges of Bacterial Glycosylation for the Development of Novel Antibacterial Strategies"
CSDB ID 10420 (all data & tools)
Compound ID: 16003

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Structure type: oligomer
Aglycon: pilin
Compound class: O-glycoprotein

Chemical Reviews 2022, "Chemical reporters for bacterial glycans: development and applications"
CSDB ID 20828 (all data & tools)

Compound ID: 16065

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Compound ID: 1030

-6)-b-D-GlcpNAc-(1- Show graphically

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Structure type: homopolymer
Trivial name: poly-β-1,6-GlcNAc (PGA), biofilm, poly-b-(1-6)-N-acetyl-D-glucosamine (PNAG), poly-β-N-acetyl-glucosamine (PNAG), PNAG, poly-N-acetylglucosamine, PNAG
Compound class: CPS, EPS, O-polysaccharide, glucan, polysaccharide
Reference(s) to other database(s): GTC:G36952FI, GlycomeDB:11210

Engineering (Beijing) 2024, "Antibodies targeting a conserved surface polysaccharide are protective against a wide range of microbial pathogens producing β-1–6-linked poly-N-acetylglucosamine (PNAG)"
CSDB ID 15645 (all data & tools)

Expand this organism

7. (Organism ID: 679)

Pseudomonas aeruginosa

(NCBI TaxID 287, species name lookup)

Previously named: Bacterium aeruginosum , Bacillus aeruginosus , Pseudomonas polycolor , Micrococcus pyocyaneus , Pseudomonas pyocyanea , Bacillus pyocyaneus , Bacterium pyocyaneum
Taxonomic group: bacteria
Phylum: Proteobacteria

The following compound(s) are assigned to this organism:

Compound ID: 846

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Structure type: polymer chemical repeating unit
Trivial name: alginate, alginate oligosaccharide, alginic acid
Compound class: EPS
Reference(s) to other database(s): GTC:G94988EU, GlycomeDB:25989

Behring Institute Mitteilungen 1997, "Rationale for development of immunotherapies that target mucoid Pseudomonas aeruginosa infection in cystic fibrosis patient"
CSDB ID 8012 (all data & tools)

Infection and Immunity 2001, "Role of alginate O acetylation in resistance of mucoid Pseudomonas aeruginosa to opsonic phagocytosis"
CSDB ID 8013 (all data & tools)

Journal of Bacteriology 1996, "Alginate synthesis in Pseudomonas aeruginosa: The role of AlgL (alginate lyase) and AlgX"
CSDB ID 3471 (all data & tools)

Infection and Immunity 2005, "Role of an alginate lyase for alginate transport in mucoid Pseudomonas aeruginosa"
CSDB ID 10556 (all data & tools)

Biochemistry 2006, "Chemical mechanism and specificity of the C5-mannuronan epimerase reaction"
CSDB ID 20310 (all data & tools)

Trends in Microbiology 2013, "Synthase-dependent exopolysaccharide secretion in Gram-negative bacteria"
CSDB ID 29812 (all data & tools)
Compound ID: 829

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Structure type: polymer chemical repeating unit
Trivial name: common antigen, common polysaccharide antigen, A band polysaccharide, D-rhamnan, repeat unit of the lipopolysaccharide side-chain, A-band polysaccharide (A-PS), A-band polysaccharide
Compound class: O-polysaccharide, O-antigen, LPS, enterobacterial common antigen, CPA
Reference(s) to other database(s): GTC:G80135ZC, GlycomeDB:25893

Microbiology 2000, "Involvement of the rml locus in core oligosaccharide and O polysaccharide assembly in Pseudomonas aeruginosa"
CSDB ID 8041 (all data & tools)

Biochemistry (Moscow) 1995, "Structure and properties of the common polysaccharide antigen of Pseudomonas aeruginosa"
CSDB ID 2802 (all data & tools)

mBio 2013, "Five New Genes Are Important for Common Polysaccharide Antigen Biosynthesis in Pseudomonas aeruginosa"
CSDB ID 29190 (all data & tools)

Chemical Reviews 2022, "Synthetic Glycans to Improve Current Glycoconjugate Vaccines and Fight Antimicrobial Resistance"
CSDB ID 20907 (all data & tools)

Compound ID: 1168

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Compound ID: 1605

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Compound ID: 1892

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Structure type: monomer
Reference(s) to other database(s): GlycomeDB:25065

Carbohydrate Research 1995, "7-O-Carbamoyl-L-glycero-D-manno-heptose: A new core constituent in the lipopolysaccharide of Pseudomonas aeruginosa"
CSDB ID 95 (all data & tools)
Compound ID: 1923

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Structure type: oligomer
Reference(s) to other database(s): GlycomeDB:25092

Carbohydrate Research 1995, "7-O-Carbamoyl-L-glycero-D-manno-heptose: A new core constituent in the lipopolysaccharide of Pseudomonas aeruginosa"
CSDB ID 130 (all data & tools)
Compound ID: 845

-4)-b-D-ManpA-(1- Show graphically

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Structure type: homopolymer
Trivial name: alginate, mannuronan
Compound class: EPS, polysaccharide
Reference(s) to other database(s): GTC:G79479XA, GlycomeDB:25662

Molecular Microbiology 2003, "The dual roles of AlgG in C-5-epimerization and secretion of alginate polymers in Pseudomonas aeruginosa"
CSDB ID 2482 (all data & tools)

Microbiological Sciences 1986, "Industrially useful microbial polysaccharides"
CSDB ID 143640 (all data & tools)

Biochemistry 2006, "Chemical mechanism and specificity of the C5-mannuronan epimerase reaction"
CSDB ID 20033 (all data & tools)
Compound ID: 2456

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Structure type: structural motif or average structure
Trivial name: alginate
Compound class: polysaccharide
Reference(s) to other database(s): GTC:G94988EU, GlycomeDB:25731

Molecular Microbiology 2003, "The dual roles of AlgG in C-5-epimerization and secretion of alginate polymers in Pseudomonas aeruginosa"
CSDB ID 2591 (all data & tools)
Compound ID: 3125

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Structure type: monomer
Aglycon: Allyl, 3-(2-ammonioethylthio)propyl, (CH2)3S(CH2)2NHCSNH-BSA
Reference(s) to other database(s): GlycomeDB:15477

Carbohydrate Research 1999, "Synthesis of Pseudomonas aeruginosa lipopolysaccharide core antigens containing 7-O-carbamoyl-L-glycero-a-D-manno-heptopyranosyl residues"
CSDB ID 4329 (all data & tools)
Compound ID: 3126

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Structure type: oligomer
Reference(s) to other database(s): GlycomeDB:26298

Carbohydrate Research 1999, "Synthesis of Pseudomonas aeruginosa lipopolysaccharide core antigens containing 7-O-carbamoyl-L-glycero-a-D-manno-heptopyranosyl residues"
CSDB ID 4417 (all data & tools)
Compound ID: 3127

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Structure type: oligomer
Aglycon: Allyl, 3-(2-ammonioethylthio)propyl, (CH2)3S(CH2)2NHCSNH-BSA
Reference(s) to other database(s): GlycomeDB:11207

Carbohydrate Research 1999, "Synthesis of Pseudomonas aeruginosa lipopolysaccharide core antigens containing 7-O-carbamoyl-L-glycero-a-D-manno-heptopyranosyl residues"
CSDB ID 4418 (all data & tools)
Compound ID: 3128

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Structure type: oligomer
Reference(s) to other database(s): GlycomeDB:11947

Carbohydrate Research 1999, "Synthesis of Pseudomonas aeruginosa lipopolysaccharide core antigens containing 7-O-carbamoyl-L-glycero-a-D-manno-heptopyranosyl residues"
CSDB ID 4470 (all data & tools)
Compound ID: 3129

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Structure type: oligomer
Aglycon: Allyl, 3-(2-ammonioethylthio)propyl, (CH2)3S(CH2)2NHCSNH-BSA
Reference(s) to other database(s): GlycomeDB:26272

Journal of Endotoxin Research 2001, "Synthesis and immunochemical characterization of neoglycoproteins containing epitopes of the inner core region of Pseudomonas aeruginosa RNA group I lipopolysaccharide"
CSDB ID 4330 (all data & tools)
Compound ID: 3130

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Structure type: monomer
Aglycon: (CH2)3S(CH2)2NHCSNH-BSA
Reference(s) to other database(s): GlycomeDB:26299

Journal of Endotoxin Research 2001, "Synthesis and immunochemical characterization of neoglycoproteins containing epitopes of the inner core region of Pseudomonas aeruginosa RNA group I lipopolysaccharide"
CSDB ID 4419 (all data & tools)
Compound ID: 3131

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Structure type: oligomer
Aglycon: (CH2)3S(CH2)2NHCSNH-BSA
Reference(s) to other database(s): GlycomeDB:26300

Journal of Endotoxin Research 2001, "Synthesis and immunochemical characterization of neoglycoproteins containing epitopes of the inner core region of Pseudomonas aeruginosa RNA group I lipopolysaccharide"
CSDB ID 4420 (all data & tools)
Compound ID: 3730

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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G17164RY, GlycomeDB:28059

Journal of Bacteriology 2002, "WbjA adds glucose to complete the O-antigen trisaccharide repeating unit of the lipopolysaccharide of Pseudomonas aeruginosa serogroup O11"
CSDB ID 6568 (all data & tools)

Compound ID: 4040

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Compound ID: 4320

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Structure type: polymer chemical repeating unit
Trivial name: alginate
Reference(s) to other database(s): GTC:G59388CM, GlycomeDB:27827

Peptides 2005, "Interaction of antimicrobial peptides with bacterial polysaccharides from lung pathogens"
CSDB ID 10791 (all data & tools)
Compound ID: 942

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Structure type: oligomer
Aglycon: lipid A
Trivial name: outer core region
Compound class: core oligosaccharide, LOS, LPS
Reference(s) to other database(s): GTC:G36348JQ, GlycomeDB:5576

Biochemistry 2005, "A Slow, Tight-Binding Inhibitor of the Zinc-Dependent Deacetylase LpxC of Lipid A Biosynthesis with Antibiotic Activity Comparable to Ciprofloxacin"
CSDB ID 10584 (all data & tools)
Compound ID: 968

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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GlycomeDB:33668

Bioorganicheskaya Khimia = Bioorganic Chemistry [Russian] 1986, "Fast-atom-bombardment mass-spectra of aminooligosaccharides"
CSDB ID 110580 (all data & tools)
Compound ID: 963

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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen, LPS
Reference(s) to other database(s): GlycomeDB:33665, CCSD:3423, CBank-STR:7166

Bioorganicheskaya Khimia = Bioorganic Chemistry [Russian] 1986, "Fast-atom-bombardment mass-spectra of aminooligosaccharides"
CSDB ID 110581 (all data & tools)
Compound ID: 4859

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Structure type: oligomer
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GlycomeDB:28264

Bioorganicheskaya Khimia = Bioorganic Chemistry [Russian] 1986, "Fast-atom-bombardment mass-spectra of aminooligosaccharides"
CSDB ID 110583 (all data & tools)
Compound ID: 4835

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Structure type: oligomer
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G42542WJ, GlycomeDB:28266

Bioorganicheskaya Khimia = Bioorganic Chemistry [Russian] 1986, "Fast-atom-bombardment mass-spectra of aminooligosaccharides"
CSDB ID 110584 (all data & tools)
Compound ID: 4834

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Structure type: oligomer
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G74863CF, GlycomeDB:28265

Bioorganicheskaya Khimia = Bioorganic Chemistry [Russian] 1986, "Fast-atom-bombardment mass-spectra of aminooligosaccharides"
CSDB ID 110585 (all data & tools)
Compound ID: 4833

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Structure type: oligomer
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G96067AE, GlycomeDB:28264

Bioorganicheskaya Khimia = Bioorganic Chemistry [Russian] 1986, "Fast-atom-bombardment mass-spectra of aminooligosaccharides"
CSDB ID 110586 (all data & tools)
Compound ID: 4860

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Structure type: oligomer
Compound class: O-polysaccharide, O-antigen

Bioorganicheskaya Khimia = Bioorganic Chemistry [Russian] 1986, "Fast-atom-bombardment mass-spectra of aminooligosaccharides"
CSDB ID 110587 (all data & tools)
Compound ID: 4861

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Structure type: oligomer
Compound class: O-polysaccharide, O-antigen

Bioorganicheskaya Khimia = Bioorganic Chemistry [Russian] 1986, "Fast-atom-bombardment mass-spectra of aminooligosaccharides"
CSDB ID 110588 (all data & tools)
Compound ID: 4904

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Structure type: oligomer
Trivial name: rhamnan
Reference(s) to other database(s): GTC:G41804RQ, GlycomeDB:4173

Bioorganicheskaya Khimia = Bioorganic Chemistry [Russian] 1989, "Synthesis of the polysaccharide common antigen of Pseudomonas aeruginosa and its L-analog as 6-aminohexyl glycosides"
CSDB ID 110756 (all data & tools)
Compound ID: 4905

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Structure type: oligomer
Compound class: LPS
Reference(s) to other database(s): GTC:G02927KK, GlycomeDB:4174

Bioorganicheskaya Khimia = Bioorganic Chemistry [Russian] 1989, "Synthesis of the polysaccharide common antigen of Pseudomonas aeruginosa and its L-analog as 6-aminohexyl glycosides"
CSDB ID 110757 (all data & tools)
Compound ID: 4906

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Structure type: oligomer
Aglycon: Hexanolamine
Reference(s) to other database(s): GTC:G40031HX, GlycomeDB:4175

Bioorganicheskaya Khimia = Bioorganic Chemistry [Russian] 1989, "Synthesis of the polysaccharide common antigen of Pseudomonas aeruginosa and its L-analog as 6-aminohexyl glycosides"
CSDB ID 110758 (all data & tools)

Carbohydrate Research 1989, "Synthesis of a common polysaccharide antigen of Pseudomonas aeruginosa as the 6-aminohexyl glycoside"
CSDB ID 115753 (all data & tools)
Compound ID: 5229

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Structure type: suggested polymer biological repeating unit
Compound class: O-antigen
Reference(s) to other database(s): GTC:G91001LI, GlycomeDB:3449

Carbohydrate Research 1989, "Synthesis of a common polysaccharide antigen of Pseudomonas aeruginosa as the 6-aminohexyl glycoside"
CSDB ID 115755 (all data & tools)
Compound ID: 5329

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Structure type: oligomer
Trivial name: the Macrocystis pyrifera alginate is comprised of 60% 4-linked ManA and 40% 4-linked GulA residues, the Pseudomonas aeruginosa alginate is comprised of 80% 4-linked ManA and 20% 4-linked GulA residues
Reference(s) to other database(s): GTC:G82240MO, GlycomeDB:6193

Carbohydrate Research 1992, "Analysis of Macrocystis pyrifera and Pseudomonas aeruginosa alginic acids by the reductive-cleavage method"
CSDB ID 116582 (all data & tools)
Compound ID: 185

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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen, LPS
Reference(s) to other database(s): GTC:G20927VJ, GlycomeDB:3412, CCSD:33489, CBank-STR:5917

Carbohydrate Research 1994, "Analysis by the reductive-cleavage method of a polysaccharide containing 2-acetamido-2,6-dideoxy-D- and -L-galactopyranosyl residues"
CSDB ID 117567 (all data & tools)

Molecular Genetics, Microbiology and Virology = Molekulyarnaya genetika, mikrobiologiya i virusologiya 1983, "O-Antigens of Pseudomonas aeruginosa: structures of the polysaccharide chains and immunochemical specificity"
CSDB ID 143845 (all data & tools)

Compound ID: 5572

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Compound ID: 4483

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Structure type: oligomer
Trivial name: alginate, mannuronan, guluronan
Compound class: EPS, alginate
Reference(s) to other database(s): GTC:G34959MP, GlycomeDB:1507

FEMS Microbiology Letters 1993, "Sequence of a gene encoding a (poly ManA) alginate lyase active on Pseudomonas aeruginosa alginate"
CSDB ID 126035 (all data & tools)

FEMS Microbiology Letters 1995, "Overproduction and properties of the mannuronate alginate lyase AlxMB"
CSDB ID 126049 (all data & tools)

Microbiological Sciences 1986, "Industrially useful microbial polysaccharides"
CSDB ID 143641 (all data & tools)

Molecular Microbiology 1993, "Nucleotide sequence and expression of the Pseudomonas aeruginosa algF gene controlling acetylation of alginate"
CSDB ID 144067 (all data & tools)

Microbial Pathogenesis 1994, "Antibody response of rabbits and cystic fibrosis patients to an alginate-specific outer membrane protein of a mucoid strain of Pseudomonas aeruginosa"
CSDB ID 143569 (all data & tools)

Microbiology and Immunology 1994, "A sandwich cup method for the penetration assay of antimicrobial agents through Pseudomonas exopolysaccharides"
CSDB ID 143609 (all data & tools)

Infection and Immunity 1994, "Human immune response to Pseudomonas aeruginosa mucoid exopolysaccharide (alginate) vaccine"
CSDB ID 130563 (all data & tools)
Compound ID: 4624

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Structure type: polymer chemical repeating unit
Compound class: EPS, O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G07327IC, GlycomeDB:3411

Molecular Genetics, Microbiology and Virology = Molekulyarnaya genetika, mikrobiologiya i virusologiya 1983, "O-Antigens of Pseudomonas aeruginosa: structures of the polysaccharide chains and immunochemical specificity"
CSDB ID 143843 (all data & tools)
Compound ID: 4623

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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen, LPS
Reference(s) to other database(s): GTC:G06229XY, GlycomeDB:25508

Molecular Genetics, Microbiology and Virology = Molekulyarnaya genetika, mikrobiologiya i virusologiya 1983, "O-Antigens of Pseudomonas aeruginosa: structures of the polysaccharide chains and immunochemical specificity"
CSDB ID 143844 (all data & tools)
Compound ID: 6180

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Structure type: oligomer
Trivial name: repeating unit of O-antigen
Reference(s) to other database(s): GTC:G45934CK, GlycomeDB:12057

Molecular Genetics, Microbiology and Virology = Molekulyarnaya genetika, mikrobiologiya i virusologiya 1983, "O-Antigens of Pseudomonas aeruginosa: structures of the polysaccharide chains and immunochemical specificity"
CSDB ID 143846 (all data & tools)
Compound ID: 6233

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Structure type: oligomer
Compound class: EPS
Reference(s) to other database(s): GTC:G16961XM, GlycomeDB:12630

SYMP: Pseudomonas aeruginosa in human diseases. International Symposium on Basic Research and Clinical Aspects of Pseudomonas Aeruginosa Infection (3rd : 1990 : Tokyo, Japan); Eds.: Homma JY et al.; Basel, New York : Karger 1991, "Vaccine potential of Pseudomonas aeruginosa mucoid exopolysaccharide (Alginate)"
CSDB ID 147989 (all data & tools)
Compound ID: 6279

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Structure type: oligomer
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G45592HR

Zhurnal Mikrobiologii, Epidemiologii i Immunobiologii = Journal of Microbiology, Epidemiology and Immunology [Russian] 1988, "Structure of O-specific polysaccharides and the protective activity of lipopolysaccharides obtained from Pseudomonas aeruginosa of seven immunotypes (Fisher's classification)"
CSDB ID 150002 (all data & tools)
Compound ID: 3700

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Structure type: polymer chemical repeating unit
Trivial name: B-band polysaccharid
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G15870HS, GlycomeDB:3409

Zhurnal Mikrobiologii, Epidemiologii i Immunobiologii = Journal of Microbiology, Epidemiology and Immunology [Russian] 1988, "Structure of O-specific polysaccharides and the protective activity of lipopolysaccharides obtained from Pseudomonas aeruginosa of seven immunotypes (Fisher's classification)"
CSDB ID 150004 (all data & tools)
Compound ID: 6329

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Structure type: oligomer
Compound class: lipid A

Archives of Biochemistry and Biophysics 1992, "Characterization of lipid A from Pseudomonas aeruginosa O-antigenic B band lipopolysaccharide by 1D- and 2D-NMR and mass spectral analysis"
CSDB ID 104795 (all data & tools)
Compound ID: 1251

-4)-a-L-GulpA-(1- Show graphically

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Structure type: homopolymer
Trivial name: alginate, guluronan
Compound class: polysaccharide
Reference(s) to other database(s): GTC:G45430OC, GlycomeDB:27247

Applied and Environmental Microbiology 1994, "Role of alginate lyase in cell detachment of Pseudomonas aeruginosa"
CSDB ID 104000 (all data & tools)

Infection and Immunity 1994, "Immunization with Pseudomonas aeruginosa vaccines and adjuvant can modulate the type of inflammatory response subsequent to infection"
CSDB ID 130555 (all data & tools)

Microbiological Sciences 1986, "Industrially useful microbial polysaccharides"
CSDB ID 143639 (all data & tools)

Compound ID: 6325

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Compound ID: 6809

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Structure type: oligomer
Trivial name: common polysaccharide antigen
Reference(s) to other database(s): GlycomeDB:28395

Carbohydrate Research 1989, "Synthesis of a common polysaccharide antigen of Pseudomonas aeruginosa as the 6-aminohexyl glycoside"
CSDB ID 115754 (all data & tools)

Compound ID: 6848

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Compound ID: 6855

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Structure type: monomer
Trivial name: UDP-α-D-GlcNAc, UDP-N-acetyl-α-D-glucosamine, UDP-2-acetamido-2-deoxy-α-D-glucopyranose, UDP-2-acetamido-α-D-glucopyranose, UPD-2-acetamido-α-D-glucopyranose, UDP-GlcNAc
Compound class: nucleoside diphosphate sugar

Chembiochem: a European Journal of Chemical Biology 2006, "Identification of Labile UDP-Ketosugars in Helicobacter pylori, Campylobacter jejuni and Pseudomonas aeruginosa: Key Metabolites used to make Glycan Virulence Factors"
CSDB ID 20012 (all data & tools)

Journal of Bacteriology 2008, "Biosynthesis of a rare di-N-acetylated sugar in the lipopolysaccharide of both Pseudomonas aeruginosa and Bordetella pertussis occurs via an identical scheme despite different gene clusters"
CSDB ID 22756 (all data & tools)
Compound ID: 6856

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Structure type: monomer
Trivial name: UDP-hexos-4-ulose sugar, UDP-2-acetamido-2,6-dideoxy-β-L-arabino-hex-4-ulose, UDP-2-acetamido-2,6-dideoxy-β-L-arabino-hexos-4-ulose, UDP-2-acetamido-2,6-dideoxy-β-L-arabino-4-hexulose
Compound class: nucleoside diphosphate sugar

Chembiochem: a European Journal of Chemical Biology 2006, "Identification of Labile UDP-Ketosugars in Helicobacter pylori, Campylobacter jejuni and Pseudomonas aeruginosa: Key Metabolites used to make Glycan Virulence Factors"
CSDB ID 21190 (all data & tools)
Compound ID: 6857

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Structure type: monomer
Trivial name: UDP-hexos-4-ulose sugar, UDP-2-acetamido-2,6-dideoxy-α-D-xylo-hexos-4-ulose, UPD-2-acetamido-2,6-dideoxy-α-D-xylo-4-hexulose
Compound class: nucleoside diphosphate sugar

Chembiochem: a European Journal of Chemical Biology 2006, "Identification of Labile UDP-Ketosugars in Helicobacter pylori, Campylobacter jejuni and Pseudomonas aeruginosa: Key Metabolites used to make Glycan Virulence Factors"
CSDB ID 21191 (all data & tools)

Compound ID: 6971

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Compound ID: 6972

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Compound ID: 7025

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Compound ID: 7026

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Compound ID: 7027

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Compound ID: 7028

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Compound ID: 7066

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Compound ID: 7106

-4)-b-D-ManpA-(1- Show graphically

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Structure type: homopolymer ; n=9-20
Trivial name: alginate
Reference(s) to other database(s): GTC:G79479XA, GlycomeDB:25662

Biochemistry 2006, "Pseudomonas aeruginosa C5-mannuronan epimerase: steady-state kinetics and characterization of the product"
CSDB ID 20032 (all data & tools)
Compound ID: 7107

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Structure type: polymer chemical repeating unit ; n=9-20
Trivial name: alginate
Reference(s) to other database(s): GTC:G94988EU, GlycomeDB:25989

Biochemistry 2006, "Pseudomonas aeruginosa C5-mannuronan epimerase: steady-state kinetics and characterization of the product"
CSDB ID 20309 (all data & tools)
Compound ID: 1144

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Structure type: monomer
Trivial name: dTDP-6-deoxy-D-xylohex-4-ulose, dTDP-4-keto-6-deoxy-α-D-glucose, dTDP-6-dideoxy-xylo-hexos-4-ulose, dTDP-6-deoxy-α-D-xylo-hex-4-ulose, dTDP-4-oxo-6-deoxy-α-D-glucose, dTDP-6-deoxy-D-xylo-hex-4-ulopyranose, dTDP-4-keto-6-deoxy-D-glucose, dTDP-4-keto-6-deoxyglucose
Compound class: nucleoside diphosphate sugar

Journal of Molecular Biology 2007, "RmlC, a C3' and C5' carbohydrate epimerase, appears to operate via an intermediate with an unusual twist boat conformation"
CSDB ID 21584 (all data & tools)

Glycobiology 2004, "Biosynthesis of 6-deoxyhexose glycans in bacteria"
CSDB ID 28845 (all data & tools)
Compound ID: 7640

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Structure type: monomer
Trivial name: dTDP-6-dideoxy-lyxo-hexos-4-ulose

Journal of Molecular Biology 2007, "RmlC, a C3' and C5' carbohydrate epimerase, appears to operate via an intermediate with an unusual twist boat conformation"
CSDB ID 22008 (all data & tools)

Compound ID: 7868

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Compound ID: 7329

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Structure type: monomer
Trivial name: UDP-2-acetamido-2,3-dideoxy-α-D-glucuronic acid, UDP-N-acetyl-D-glucuronic acid, UDP-N-acetyl-α-D-glucosaminuronic acid, UDP-GlcNAcA, UDP-D-GlcNAcA, UDP-D-GlcNAc
Compound class: nucleoside diphosphate sugar

Journal of Bacteriology 2008, "Biosynthesis of a rare di-N-acetylated sugar in the lipopolysaccharide of both Pseudomonas aeruginosa and Bordetella pertussis occurs via an identical scheme despite different gene clusters"
CSDB ID 23329 (all data & tools)
Compound ID: 7330

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Structure type: monomer
Trivial name: UDP-2-acetamido-2-deoxy-D-ribo-hex-3-uluronic acid, UDP-2-aceamido-2-deoxy-α-D-ribo-hex-3-uluronic acid, UDP-3-keto-GlcNAcA, UDP-GlcNAc(3keto)A

Journal of Bacteriology 2008, "Biosynthesis of a rare di-N-acetylated sugar in the lipopolysaccharide of both Pseudomonas aeruginosa and Bordetella pertussis occurs via an identical scheme despite different gene clusters"
CSDB ID 23330 (all data & tools)
Compound ID: 7331

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Structure type: monomer
Trivial name: UDP-2-acetamido-3-amino-2,3-dideoxy-α-D-glucuronic acid, UDP-GlcNAc(3NH2)A, UDP-3-amino-GlcNAcA

Journal of Bacteriology 2008, "Biosynthesis of a rare di-N-acetylated sugar in the lipopolysaccharide of both Pseudomonas aeruginosa and Bordetella pertussis occurs via an identical scheme despite different gene clusters"
CSDB ID 23331 (all data & tools)
Compound ID: 7332

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Structure type: monomer
Trivial name: UDP-2,3-diacetamido-2,3-dideoxy-α-D-glucuronic acid, UDP-GlcNAc(3NAc)A, UDP-Glc-2,3-diNAcA, UDP-D-GlcNAc3NAcA

Journal of Bacteriology 2008, "Biosynthesis of a rare di-N-acetylated sugar in the lipopolysaccharide of both Pseudomonas aeruginosa and Bordetella pertussis occurs via an identical scheme despite different gene clusters"
CSDB ID 23332 (all data & tools)
Compound ID: 7333

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Structure type: monomer
Trivial name: UDP-2,3-diacetamido-2,3-dideoxy-α-D-mannuronic acid, UDP-ManNAc(3NAc)A, UDP-D-ManNAc3NAcA

Journal of Bacteriology 2008, "Biosynthesis of a rare di-N-acetylated sugar in the lipopolysaccharide of both Pseudomonas aeruginosa and Bordetella pertussis occurs via an identical scheme despite different gene clusters"
CSDB ID 23333 (all data & tools)
Compound ID: 8211

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Structure type: oligomer
Aglycon: OCH2CH2CH2SCH2CH2NH2
Trivial name: synthetic disaccharide
Reference(s) to other database(s): GlycomeDB:25838

Current Topics in Medicinal Chemistry 2008, "Recent developments in synthetic oligosaccharide-based bacterial vaccines"
CSDB ID 23499 (all data & tools)
Compound ID: 8212

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Structure type: oligomer
Aglycon: OCH2CH2CH2SCH2CH2NH2
Trivial name: synthetic disaccharide
Reference(s) to other database(s): GlycomeDB:11207

Current Topics in Medicinal Chemistry 2008, "Recent developments in synthetic oligosaccharide-based bacterial vaccines"
CSDB ID 23500 (all data & tools)
Compound ID: 8401

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Structure type: polymer chemical repeating unit ; n=4
Trivial name: B-Band O-antigen
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GlycomeDB:37261

Journal of the Brazilian Chemical Society 2008, "Influence of the B-band O-antigen chain in the structure and electrostatics of the lipopolysaccharide membrane of Pseudomonas aeruginosa"
CSDB ID 23639 (all data & tools)

Compound ID: 8418

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Compound ID: 8506

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Compound ID: 8507

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Compound ID: 7159

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Structure type: monomer
Trivial name: componente of O-antigen, GDP-mannose, GDP-α-D-mannose, GDP-D-Man
Compound class: nucleoside diphosphate sugar

FEBS Journal 2009, "The structural basis for catalytic function of GMD and RMD, two closely related enzymes from the GDP-D-rhamnose biosynthesis pathway"
CSDB ID 23740 (all data & tools)
Compound ID: 7309

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Structure type: monomer
Trivial name: GDP-4-keto-6-deoxy-D-mannose, GDP-4-keto-6-deoxymannose, GDP-6-deoxy-α-D-lyxo-hex-4-ulose, GDP-4-keto-6-deoxy-α-D-mannose, GDP-6-deoxy-D-lyxo-hexos-4-ulose
Compound class: nucleoside diphosphate sugar

FEBS Journal 2009, "The structural basis for catalytic function of GMD and RMD, two closely related enzymes from the GDP-D-rhamnose biosynthesis pathway"
CSDB ID 24052 (all data & tools)

Glycobiology 2004, "Biosynthesis of 6-deoxyhexose glycans in bacteria"
CSDB ID 8949 (all data & tools)
Compound ID: 8516

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Structure type: monomer
Trivial name: gem-diol of GDP-6-deoxy-D-lyxo-hexos-4-ulose

FEBS Journal 2009, "The structural basis for catalytic function of GMD and RMD, two closely related enzymes from the GDP-D-rhamnose biosynthesis pathway"
CSDB ID 24053 (all data & tools)
Compound ID: 8517

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Structure type: monomer
Aglycon: G
Trivial name: GDP-D-rhamnose

FEBS Journal 2009, "The structural basis for catalytic function of GMD and RMD, two closely related enzymes from the GDP-D-rhamnose biosynthesis pathway"
CSDB ID 24054 (all data & tools)

Compound ID: 9115

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Compound ID: 9116

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Compound ID: 9117

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Compound ID: 9118

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Compound ID: 9119

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Compound ID: 9120

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Compound ID: 9204

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Compound ID: 9466

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Structure type: polymer chemical repeating unit
Trivial name: alginate, alginate polysaccharide
Compound class: EPS
Reference(s) to other database(s): GTC:G61770DS

Frontiers in Microbiology 2011, "Biosynthesis of the Pseudomonas aeruginosa Extracellular Polysaccharides, Alginate, Pel, and Psl"
CSDB ID 26200 (all data & tools)

Chemical Reviews 2022, "Chemical reporters for bacterial glycans: development and applications"
CSDB ID 20836 (all data & tools)

Compound ID: 5936

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Compound ID: 9685

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Compound ID: 9686

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Compound ID: 9710

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Compound ID: 9711

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Compound ID: 10271

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Structure type: oligomer
Trivial name: monorhamnolipid RL-1

Current Opinion in Colloid and Interface Science 2002, "Biological amphiphiles (microbial biosurfactants)"
CSDB ID 15005 (all data & tools)
Compound ID: 10272

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Structure type: oligomer
Trivial name: dirhamnolipid RL-2

Current Opinion in Colloid and Interface Science 2002, "Biological amphiphiles (microbial biosurfactants)"
CSDB ID 15006 (all data & tools)
Compound ID: 6351

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Structure type: oligomer
Trivial name: rhamnolipid, rhamnolipid B
Compound class: glycolipid, rhamnolipid

FEMS Microbiology Reviews 2012, "Pseudomonas biofilm matrix composition and niche biology"
CSDB ID 31088 (all data & tools)

Archives of Biochemistry and Biophysics 1965, "Structure of a rhamnolipid from Pseudomonas aeruginosa"
CSDB ID 45654 (all data & tools)

Journal of Agricultural and Food Chemistry 2015, "Rhamnolipids as platform molecules for production of potential anti-zoospore agrochemicals"
CSDB ID 47774 (all data & tools)

Biotechnology Progress 2005, "Rhamnolipid surfactants: an update on the general aspects of these remarkable biomolecules"
CSDB ID 47379 (all data & tools)

Applied Microbiology and Biotechnology 2019, "Microbial biosurfactants for oil spill remediation: pitfalls and potentials"
CSDB ID 49780 (all data & tools)

Compound ID: 10872

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Compound ID: 10873

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Compound ID: 10874

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Compound ID: 10875

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Compound ID: 10876

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Compound ID: 10940

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Structure type: monomer
Trivial name: GDP-4-keto-6-deoxy-L-galactose

Glycobiology 2004, "Biosynthesis of 6-deoxyhexose glycans in bacteria"
CSDB ID 28840 (all data & tools)
Compound ID: 7898

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Structure type: monomer
Trivial name: GDP-β-L-fucopyranose, GDP-β-L-fucose, GDP-L-fucose
Compound class: nucleoside diphosphate sugar

Glycobiology 2004, "Biosynthesis of 6-deoxyhexose glycans in bacteria"
CSDB ID 28841 (all data & tools)
Compound ID: 10941

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Structure type: monomer
Trivial name: GDP-L-quinovose

Glycobiology 2004, "Biosynthesis of 6-deoxyhexose glycans in bacteria"
CSDB ID 28842 (all data & tools)
Compound ID: 10942

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Structure type: monomer
Trivial name: GDP-D-rhamnose

Glycobiology 2004, "Biosynthesis of 6-deoxyhexose glycans in bacteria"
CSDB ID 28843 (all data & tools)
Compound ID: 7941

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Structure type: monomer
Trivial name: dTDP-6-deoxy-β-L-lyxo-hex-4-ulose, dTDP-4-keto-6-deoxy-L-mannose

Glycobiology 2004, "Biosynthesis of 6-deoxyhexose glycans in bacteria"
CSDB ID 28847 (all data & tools)
Compound ID: 6967

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Structure type: monomer
Trivial name: dTDP-β-L-rhamnose, dTDP-β-L-rhamnopyranose, dTDP-L-rhamnose

Glycobiology 2004, "Biosynthesis of 6-deoxyhexose glycans in bacteria"
CSDB ID 28848 (all data & tools)

Compound ID: 11291

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Compound ID: 11292

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Compound ID: 12621

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Compound ID: 12623

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Compound ID: 12624

2HOLau-(1-3)-3HOLau-(1-2)-+ | P-4)-+ | | | Lau-(1-3)-3HOLau-(1-2)-+ | | | | | a-D-Glcp-(1-4)-+ | | | | | | | a-D-Glcp-(1-6)-+ | P-6)-+ EtN-(1---P---P---2)-+ a-Kdop-(2-4)-+ | | | | | | | | | | | a-L-Rhap2Ac-(1-4)-a-L-GalpNAcA-(1-3)-b-D-QuipNAc-(1-3)-a-L-Rhap-(1-3)-b-D-Glcp-(1-3)-a-D-GalpN-(1-3)-L-gro-a-D-manHepp7Cm-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P | | | | L-Ala-(1-2)-+ P-4)-+ 3HODco-(1-3)-+ 3HODco-(1-3)-+

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Compound ID: 12660

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Compound ID: 13374

-4)-b-D-ManpA-(1- Show graphically

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Structure type: homopolymer ; 30000-1300000
Trivial name: algin
Compound class: EPS
Reference(s) to other database(s): GTC:G79479XA

Bioresource Technology 2017, "Engineering aspects of microbial exopolysaccharide production"
CSDB ID 43166 (all data & tools)
Compound ID: 13375

-4)-a-L-GulpA-(1- Show graphically

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Structure type: homopolymer ; 30000-1300000
Trivial name: algin
Compound class: EPS
Reference(s) to other database(s): GTC:G45430OC

Bioresource Technology 2017, "Engineering aspects of microbial exopolysaccharide production"
CSDB ID 43167 (all data & tools)
Compound ID: 13551

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Structure type: structural motif or average structure
Trivial name: alginate
Reference(s) to other database(s): GTC:G08476TB

Current Opinion in Structural Biology 2015, "Insights into the structure and function of membrane-integrated processive glycosyltransferases"
CSDB ID 48512 (all data & tools)
Compound ID: 14254

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Structure type: monomer ; 504
Compound class: glycolipid, rhamnolipid

Journal of Agricultural and Food Chemistry 2015, "Rhamnolipids as platform molecules for production of potential anti-zoospore agrochemicals"
CSDB ID 47772 (all data & tools)
Compound ID: 14255

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Structure type: monomer ; 334
Compound class: glycolipid, rhamnolipid

Journal of Agricultural and Food Chemistry 2015, "Rhamnolipids as platform molecules for production of potential anti-zoospore agrochemicals"
CSDB ID 47773 (all data & tools)
Compound ID: 14256

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Structure type: oligomer ; 480
Compound class: glycolipid, rhamnolipid

Journal of Agricultural and Food Chemistry 2015, "Rhamnolipids as platform molecules for production of potential anti-zoospore agrochemicals"
CSDB ID 47775 (all data & tools)

Compound ID: 14257

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Compound ID: 14316

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Structure type: oligomer
Compound class: rhamnolipid

Letters in Applied Microbiology 2015, "Biosurfactants in cosmetics and biopharmaceuticals"
CSDB ID 48221 (all data & tools)
Compound ID: 14317

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Structure type: oligomer
Compound class: rhamnolipid

Letters in Applied Microbiology 2015, "Biosurfactants in cosmetics and biopharmaceuticals"
CSDB ID 48222 (all data & tools)
Compound ID: 14326

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Structure type: oligomer
Compound class: rhamnolipid

European Journal of Organic Chemistry 1998, "An efficient synthesis of (R)-3-{(R)-3-[2-O-(α-L-rhamnopyranosyl)-α-L-rhamnopyranosyl]oxydecanoyl}oxydecanoic acid, a rhamnolipid from Pseudomonas aeruginosa"
CSDB ID 49349 (all data & tools)
Compound ID: 14327

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Structure type: oligomer ; 673 [M+Na]+
Compound class: rhamnolipid

European Journal of Organic Chemistry 1998, "An efficient synthesis of (R)-3-{(R)-3-[2-O-(α-L-rhamnopyranosyl)-α-L-rhamnopyranosyl]oxydecanoyl}oxydecanoic acid, a rhamnolipid from Pseudomonas aeruginosa"
CSDB ID 49350 (all data & tools)
Compound ID: 6350

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Structure type: monomer
Trivial name: rhamnolipid
Compound class: glycolipid, rhamnolipid

Biotechnology Progress 2005, "Rhamnolipid surfactants: an update on the general aspects of these remarkable biomolecules"
CSDB ID 47853 (all data & tools)
Compound ID: 14329

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Structure type: oligomer
Compound class: rhamnolipid

Biotechnology Progress 2005, "Rhamnolipid surfactants: an update on the general aspects of these remarkable biomolecules"
CSDB ID 49215 (all data & tools)
Compound ID: 14330

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Structure type: monomer
Compound class: rhamnolipid

Biotechnology Progress 2005, "Rhamnolipid surfactants: an update on the general aspects of these remarkable biomolecules"
CSDB ID 49216 (all data & tools)

Compound ID: 14442

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Compound ID: 15028

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Structure type: structural motif or average structure
Trivial name: Pel
Compound class: EPS
Reference(s) to other database(s): GTC:G18528HB

Annual Review of Microbiology 2020, "Assembly of Bacterial Capsular Polysaccharides and Exopolysaccharides"
CSDB ID 7662 (all data & tools)

Compound ID: 15029

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Compound ID: 15686

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Compound ID: 15726

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Structure type: structural motif or average structure
Trivial name: Pel
Compound class: EPS

Cell Reports 2021, "Pseudomonas aeruginosa aggregates in cystic fibrosis sputum produce exopolysaccharides that likely impede current therapies"
CSDB ID 10869 (all data & tools)
Compound ID: 15876

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Structure type: structural motif or average structure
Trivial name: alginate
Compound class: EPS

International Journal of Biological Macromolecules 2021, "Bacterial exopolysaccharides: Chemical structures, gene clusters and genetic engineering"
CSDB ID 9780 (all data & tools)

Compound ID: 16104

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Compound ID: 16120

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Compound ID: 8856

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Compound ID: 16625

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Compound ID: 16626

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Compound ID: 16644

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Structure type: structural motif or average structure
Trivial name: alginate
Compound class: EPS

World Journal of Microbiology and Biotechnology 2023, "Recent advances in the biological activities of microbial exopolysaccharides"
CSDB ID 24830 (all data & tools)

Compound ID: 16645

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Compound ID: 16708

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Structure type: structural motif or average structure
Trivial name: alginate
Compound class: EPS

Heliyon 2023, "Microbial exopolysaccharides in the biomedical and pharmaceutical industries"
CSDB ID 27062 (all data & tools)

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