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1. (Organism ID: 679)

Pseudomonas aeruginosa

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(NCBI TaxID 287, species name lookup)

Previously named: Bacterium aeruginosum , Bacillus aeruginosus , Pseudomonas polycolor , Micrococcus pyocyaneus , Pseudomonas pyocyanea , Bacillus pyocyaneus , Bacterium pyocyaneum
Taxonomic group: bacteria
Phylum: Proteobacteria

The following compound(s) are assigned to this organism:

Compound ID: 846

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Structure type: polymer chemical repeating unit
Trivial name: alginate, alginate oligosaccharide, alginic acid
Compound class: EPS
Reference(s) to other database(s): GTC:G94988EU, GlycomeDB:25989

Behring Institute Mitteilungen 1997, "Rationale for development of immunotherapies that target mucoid Pseudomonas aeruginosa infection in cystic fibrosis patient"
CSDB ID 8012 (all data & tools)

Infection and Immunity 2001, "Role of alginate O acetylation in resistance of mucoid Pseudomonas aeruginosa to opsonic phagocytosis"
CSDB ID 8013 (all data & tools)

Journal of Bacteriology 1996, "Alginate synthesis in Pseudomonas aeruginosa: The role of AlgL (alginate lyase) and AlgX"
CSDB ID 3471 (all data & tools)

Infection and Immunity 2005, "Role of an alginate lyase for alginate transport in mucoid Pseudomonas aeruginosa"
CSDB ID 10556 (all data & tools)

Biochemistry 2006, "Chemical mechanism and specificity of the C5-mannuronan epimerase reaction"
CSDB ID 20310 (all data & tools)

Trends in Microbiology 2013, "Synthase-dependent exopolysaccharide secretion in Gram-negative bacteria"
CSDB ID 29812 (all data & tools)
Compound ID: 829

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Structure type: polymer chemical repeating unit
Trivial name: common antigen, common polysaccharide antigen, A band polysaccharide, D-rhamnan, repeat unit of the lipopolysaccharide side-chain, A-band polysaccharide (A-PS), A-band polysaccharide
Compound class: O-polysaccharide, O-antigen, LPS, enterobacterial common antigen, CPA
Reference(s) to other database(s): GTC:G80135ZC, GlycomeDB:25893

Microbiology 2000, "Involvement of the rml locus in core oligosaccharide and O polysaccharide assembly in Pseudomonas aeruginosa"
CSDB ID 8041 (all data & tools)

Biochemistry (Moscow) 1995, "Structure and properties of the common polysaccharide antigen of Pseudomonas aeruginosa"
CSDB ID 2802 (all data & tools)

mBio 2013, "Five New Genes Are Important for Common Polysaccharide Antigen Biosynthesis in Pseudomonas aeruginosa"
CSDB ID 29190 (all data & tools)

Chemical Reviews 2022, "Synthetic Glycans to Improve Current Glycoconjugate Vaccines and Fight Antimicrobial Resistance"
CSDB ID 20907 (all data & tools)

Compound ID: 1168

Compound 1168

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Compound ID: 1605

Compound 1605

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Compound ID: 1892

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Structure type: monomer
Reference(s) to other database(s): GlycomeDB:25065

Carbohydrate Research 1995, "7-O-Carbamoyl-L-glycero-D-manno-heptose: A new core constituent in the lipopolysaccharide of Pseudomonas aeruginosa"
CSDB ID 95 (all data & tools)
Compound ID: 1923

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Structure type: oligomer
Reference(s) to other database(s): GlycomeDB:25092

Carbohydrate Research 1995, "7-O-Carbamoyl-L-glycero-D-manno-heptose: A new core constituent in the lipopolysaccharide of Pseudomonas aeruginosa"
CSDB ID 130 (all data & tools)
Compound ID: 845

-4)-b-D-ManpA-(1- Show graphically

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Structure type: homopolymer
Trivial name: alginate, mannuronan
Compound class: EPS, polysaccharide
Reference(s) to other database(s): GTC:G79479XA, GlycomeDB:25662

Molecular Microbiology 2003, "The dual roles of AlgG in C-5-epimerization and secretion of alginate polymers in Pseudomonas aeruginosa"
CSDB ID 2482 (all data & tools)

Microbiological Sciences 1986, "Industrially useful microbial polysaccharides"
CSDB ID 143640 (all data & tools)

Biochemistry 2006, "Chemical mechanism and specificity of the C5-mannuronan epimerase reaction"
CSDB ID 20033 (all data & tools)
Compound ID: 2456

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Structure type: structural motif or average structure
Trivial name: alginate
Compound class: polysaccharide
Reference(s) to other database(s): GTC:G94988EU, GlycomeDB:25731

Molecular Microbiology 2003, "The dual roles of AlgG in C-5-epimerization and secretion of alginate polymers in Pseudomonas aeruginosa"
CSDB ID 2591 (all data & tools)
Compound ID: 3125

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Structure type: monomer
Aglycon: Allyl, 3-(2-ammonioethylthio)propyl, (CH2)3S(CH2)2NHCSNH-BSA
Reference(s) to other database(s): GlycomeDB:15477

Carbohydrate Research 1999, "Synthesis of Pseudomonas aeruginosa lipopolysaccharide core antigens containing 7-O-carbamoyl-L-glycero-a-D-manno-heptopyranosyl residues"
CSDB ID 4329 (all data & tools)
Compound ID: 3126

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Structure type: oligomer
Reference(s) to other database(s): GlycomeDB:26298

Carbohydrate Research 1999, "Synthesis of Pseudomonas aeruginosa lipopolysaccharide core antigens containing 7-O-carbamoyl-L-glycero-a-D-manno-heptopyranosyl residues"
CSDB ID 4417 (all data & tools)
Compound ID: 3127

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Structure type: oligomer
Aglycon: Allyl, 3-(2-ammonioethylthio)propyl, (CH2)3S(CH2)2NHCSNH-BSA
Reference(s) to other database(s): GlycomeDB:11207

Carbohydrate Research 1999, "Synthesis of Pseudomonas aeruginosa lipopolysaccharide core antigens containing 7-O-carbamoyl-L-glycero-a-D-manno-heptopyranosyl residues"
CSDB ID 4418 (all data & tools)
Compound ID: 3128

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Structure type: oligomer
Reference(s) to other database(s): GlycomeDB:11947

Carbohydrate Research 1999, "Synthesis of Pseudomonas aeruginosa lipopolysaccharide core antigens containing 7-O-carbamoyl-L-glycero-a-D-manno-heptopyranosyl residues"
CSDB ID 4470 (all data & tools)
Compound ID: 3129

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Structure type: oligomer
Aglycon: Allyl, 3-(2-ammonioethylthio)propyl, (CH2)3S(CH2)2NHCSNH-BSA
Reference(s) to other database(s): GlycomeDB:26272

Journal of Endotoxin Research 2001, "Synthesis and immunochemical characterization of neoglycoproteins containing epitopes of the inner core region of Pseudomonas aeruginosa RNA group I lipopolysaccharide"
CSDB ID 4330 (all data & tools)
Compound ID: 3130

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Structure type: monomer
Aglycon: (CH2)3S(CH2)2NHCSNH-BSA
Reference(s) to other database(s): GlycomeDB:26299

Journal of Endotoxin Research 2001, "Synthesis and immunochemical characterization of neoglycoproteins containing epitopes of the inner core region of Pseudomonas aeruginosa RNA group I lipopolysaccharide"
CSDB ID 4419 (all data & tools)
Compound ID: 3131

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Structure type: oligomer
Aglycon: (CH2)3S(CH2)2NHCSNH-BSA
Reference(s) to other database(s): GlycomeDB:26300

Journal of Endotoxin Research 2001, "Synthesis and immunochemical characterization of neoglycoproteins containing epitopes of the inner core region of Pseudomonas aeruginosa RNA group I lipopolysaccharide"
CSDB ID 4420 (all data & tools)
Compound ID: 3730

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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G17164RY, GlycomeDB:28059

Journal of Bacteriology 2002, "WbjA adds glucose to complete the O-antigen trisaccharide repeating unit of the lipopolysaccharide of Pseudomonas aeruginosa serogroup O11"
CSDB ID 6568 (all data & tools)

Compound ID: 4040

Compound 4040

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Compound ID: 4320

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Structure type: polymer chemical repeating unit
Trivial name: alginate
Reference(s) to other database(s): GTC:G59388CM, GlycomeDB:27827

Peptides 2005, "Interaction of antimicrobial peptides with bacterial polysaccharides from lung pathogens"
CSDB ID 10791 (all data & tools)
Compound ID: 942

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Structure type: oligomer
Aglycon: lipid A
Trivial name: outer core region
Compound class: core oligosaccharide, LOS, LPS
Reference(s) to other database(s): GTC:G36348JQ, GlycomeDB:5576

Biochemistry 2005, "A Slow, Tight-Binding Inhibitor of the Zinc-Dependent Deacetylase LpxC of Lipid A Biosynthesis with Antibiotic Activity Comparable to Ciprofloxacin"
CSDB ID 10584 (all data & tools)
Compound ID: 968

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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GlycomeDB:33668

Bioorganicheskaya Khimia = Bioorganic Chemistry [Russian] 1986, "Fast-atom-bombardment mass-spectra of aminooligosaccharides"
CSDB ID 110580 (all data & tools)
Compound ID: 963

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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen, LPS
Reference(s) to other database(s): GlycomeDB:33665, CCSD:3423, CBank-STR:7166

Bioorganicheskaya Khimia = Bioorganic Chemistry [Russian] 1986, "Fast-atom-bombardment mass-spectra of aminooligosaccharides"
CSDB ID 110581 (all data & tools)
Compound ID: 4859

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Structure type: oligomer
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GlycomeDB:28264

Bioorganicheskaya Khimia = Bioorganic Chemistry [Russian] 1986, "Fast-atom-bombardment mass-spectra of aminooligosaccharides"
CSDB ID 110583 (all data & tools)
Compound ID: 4835

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Structure type: oligomer
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G42542WJ, GlycomeDB:28266

Bioorganicheskaya Khimia = Bioorganic Chemistry [Russian] 1986, "Fast-atom-bombardment mass-spectra of aminooligosaccharides"
CSDB ID 110584 (all data & tools)
Compound ID: 4834

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Structure type: oligomer
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G74863CF, GlycomeDB:28265

Bioorganicheskaya Khimia = Bioorganic Chemistry [Russian] 1986, "Fast-atom-bombardment mass-spectra of aminooligosaccharides"
CSDB ID 110585 (all data & tools)
Compound ID: 4833

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Structure type: oligomer
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G96067AE, GlycomeDB:28264

Bioorganicheskaya Khimia = Bioorganic Chemistry [Russian] 1986, "Fast-atom-bombardment mass-spectra of aminooligosaccharides"
CSDB ID 110586 (all data & tools)
Compound ID: 4860

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Structure type: oligomer
Compound class: O-polysaccharide, O-antigen

Bioorganicheskaya Khimia = Bioorganic Chemistry [Russian] 1986, "Fast-atom-bombardment mass-spectra of aminooligosaccharides"
CSDB ID 110587 (all data & tools)
Compound ID: 4861

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Structure type: oligomer
Compound class: O-polysaccharide, O-antigen

Bioorganicheskaya Khimia = Bioorganic Chemistry [Russian] 1986, "Fast-atom-bombardment mass-spectra of aminooligosaccharides"
CSDB ID 110588 (all data & tools)
Compound ID: 4904

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Structure type: oligomer
Trivial name: rhamnan
Reference(s) to other database(s): GTC:G41804RQ, GlycomeDB:4173

Bioorganicheskaya Khimia = Bioorganic Chemistry [Russian] 1989, "Synthesis of the polysaccharide common antigen of Pseudomonas aeruginosa and its L-analog as 6-aminohexyl glycosides"
CSDB ID 110756 (all data & tools)
Compound ID: 4905

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Structure type: oligomer
Compound class: LPS
Reference(s) to other database(s): GTC:G02927KK, GlycomeDB:4174

Bioorganicheskaya Khimia = Bioorganic Chemistry [Russian] 1989, "Synthesis of the polysaccharide common antigen of Pseudomonas aeruginosa and its L-analog as 6-aminohexyl glycosides"
CSDB ID 110757 (all data & tools)
Compound ID: 4906

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Structure type: oligomer
Aglycon: Hexanolamine
Reference(s) to other database(s): GTC:G40031HX, GlycomeDB:4175

Bioorganicheskaya Khimia = Bioorganic Chemistry [Russian] 1989, "Synthesis of the polysaccharide common antigen of Pseudomonas aeruginosa and its L-analog as 6-aminohexyl glycosides"
CSDB ID 110758 (all data & tools)

Carbohydrate Research 1989, "Synthesis of a common polysaccharide antigen of Pseudomonas aeruginosa as the 6-aminohexyl glycoside"
CSDB ID 115753 (all data & tools)
Compound ID: 5229

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Structure type: suggested polymer biological repeating unit
Compound class: O-antigen
Reference(s) to other database(s): GTC:G91001LI, GlycomeDB:3449

Carbohydrate Research 1989, "Synthesis of a common polysaccharide antigen of Pseudomonas aeruginosa as the 6-aminohexyl glycoside"
CSDB ID 115755 (all data & tools)
Compound ID: 5329

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Structure type: oligomer
Trivial name: the Macrocystis pyrifera alginate is comprised of 60% 4-linked ManA and 40% 4-linked GulA residues, the Pseudomonas aeruginosa alginate is comprised of 80% 4-linked ManA and 20% 4-linked GulA residues
Reference(s) to other database(s): GTC:G82240MO, GlycomeDB:6193

Carbohydrate Research 1992, "Analysis of Macrocystis pyrifera and Pseudomonas aeruginosa alginic acids by the reductive-cleavage method"
CSDB ID 116582 (all data & tools)
Compound ID: 185

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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen, LPS
Reference(s) to other database(s): GTC:G20927VJ, GlycomeDB:3412, CCSD:33489, CBank-STR:5917

Carbohydrate Research 1994, "Analysis by the reductive-cleavage method of a polysaccharide containing 2-acetamido-2,6-dideoxy-D- and -L-galactopyranosyl residues"
CSDB ID 117567 (all data & tools)

Molecular Genetics, Microbiology and Virology = Molekulyarnaya genetika, mikrobiologiya i virusologiya 1983, "O-Antigens of Pseudomonas aeruginosa: structures of the polysaccharide chains and immunochemical specificity"
CSDB ID 143845 (all data & tools)

Compound ID: 5572

Compound 5572

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Compound ID: 4483

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Structure type: oligomer
Trivial name: alginate, mannuronan, guluronan
Compound class: EPS, alginate
Reference(s) to other database(s): GTC:G34959MP, GlycomeDB:1507

FEMS Microbiology Letters 1993, "Sequence of a gene encoding a (poly ManA) alginate lyase active on Pseudomonas aeruginosa alginate"
CSDB ID 126035 (all data & tools)

FEMS Microbiology Letters 1995, "Overproduction and properties of the mannuronate alginate lyase AlxMB"
CSDB ID 126049 (all data & tools)

Microbiological Sciences 1986, "Industrially useful microbial polysaccharides"
CSDB ID 143641 (all data & tools)

Molecular Microbiology 1993, "Nucleotide sequence and expression of the Pseudomonas aeruginosa algF gene controlling acetylation of alginate"
CSDB ID 144067 (all data & tools)

Microbial Pathogenesis 1994, "Antibody response of rabbits and cystic fibrosis patients to an alginate-specific outer membrane protein of a mucoid strain of Pseudomonas aeruginosa"
CSDB ID 143569 (all data & tools)

Microbiology and Immunology 1994, "A sandwich cup method for the penetration assay of antimicrobial agents through Pseudomonas exopolysaccharides"
CSDB ID 143609 (all data & tools)

Infection and Immunity 1994, "Human immune response to Pseudomonas aeruginosa mucoid exopolysaccharide (alginate) vaccine"
CSDB ID 130563 (all data & tools)
Compound ID: 4624

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Structure type: polymer chemical repeating unit
Compound class: EPS, O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G07327IC, GlycomeDB:3411

Molecular Genetics, Microbiology and Virology = Molekulyarnaya genetika, mikrobiologiya i virusologiya 1983, "O-Antigens of Pseudomonas aeruginosa: structures of the polysaccharide chains and immunochemical specificity"
CSDB ID 143843 (all data & tools)
Compound ID: 4623

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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen, LPS
Reference(s) to other database(s): GTC:G06229XY, GlycomeDB:25508

Molecular Genetics, Microbiology and Virology = Molekulyarnaya genetika, mikrobiologiya i virusologiya 1983, "O-Antigens of Pseudomonas aeruginosa: structures of the polysaccharide chains and immunochemical specificity"
CSDB ID 143844 (all data & tools)
Compound ID: 6180

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Structure type: oligomer
Trivial name: repeating unit of O-antigen
Reference(s) to other database(s): GTC:G45934CK, GlycomeDB:12057

Molecular Genetics, Microbiology and Virology = Molekulyarnaya genetika, mikrobiologiya i virusologiya 1983, "O-Antigens of Pseudomonas aeruginosa: structures of the polysaccharide chains and immunochemical specificity"
CSDB ID 143846 (all data & tools)
Compound ID: 6233

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Structure type: oligomer
Compound class: EPS
Reference(s) to other database(s): GTC:G16961XM, GlycomeDB:12630

SYMP: Pseudomonas aeruginosa in human diseases. International Symposium on Basic Research and Clinical Aspects of Pseudomonas Aeruginosa Infection (3rd : 1990 : Tokyo, Japan); Eds.: Homma JY et al.; Basel, New York : Karger 1991, "Vaccine potential of Pseudomonas aeruginosa mucoid exopolysaccharide (Alginate)"
CSDB ID 147989 (all data & tools)
Compound ID: 6279

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Structure type: oligomer
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G45592HR

Zhurnal Mikrobiologii, Epidemiologii i Immunobiologii = Journal of Microbiology, Epidemiology and Immunology [Russian] 1988, "Structure of O-specific polysaccharides and the protective activity of lipopolysaccharides obtained from Pseudomonas aeruginosa of seven immunotypes (Fisher's classification)"
CSDB ID 150002 (all data & tools)
Compound ID: 3700

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Structure type: polymer chemical repeating unit
Trivial name: B-band polysaccharid
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G15870HS, GlycomeDB:3409

Zhurnal Mikrobiologii, Epidemiologii i Immunobiologii = Journal of Microbiology, Epidemiology and Immunology [Russian] 1988, "Structure of O-specific polysaccharides and the protective activity of lipopolysaccharides obtained from Pseudomonas aeruginosa of seven immunotypes (Fisher's classification)"
CSDB ID 150004 (all data & tools)
Compound ID: 6329

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Structure type: oligomer
Compound class: lipid A

Archives of Biochemistry and Biophysics 1992, "Characterization of lipid A from Pseudomonas aeruginosa O-antigenic B band lipopolysaccharide by 1D- and 2D-NMR and mass spectral analysis"
CSDB ID 104795 (all data & tools)
Compound ID: 1251

-4)-a-L-GulpA-(1- Show graphically

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Structure type: homopolymer
Trivial name: alginate, guluronan
Compound class: polysaccharide
Reference(s) to other database(s): GTC:G45430OC, GlycomeDB:27247

Applied and Environmental Microbiology 1994, "Role of alginate lyase in cell detachment of Pseudomonas aeruginosa"
CSDB ID 104000 (all data & tools)

Infection and Immunity 1994, "Immunization with Pseudomonas aeruginosa vaccines and adjuvant can modulate the type of inflammatory response subsequent to infection"
CSDB ID 130555 (all data & tools)

Microbiological Sciences 1986, "Industrially useful microbial polysaccharides"
CSDB ID 143639 (all data & tools)

Compound ID: 6325

Compound 6325

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Compound ID: 6809

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Structure type: oligomer
Trivial name: common polysaccharide antigen
Reference(s) to other database(s): GlycomeDB:28395

Carbohydrate Research 1989, "Synthesis of a common polysaccharide antigen of Pseudomonas aeruginosa as the 6-aminohexyl glycoside"
CSDB ID 115754 (all data & tools)

Compound ID: 6848

Compound 6848

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Compound ID: 6855

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Structure type: monomer
Trivial name: UDP-α-D-GlcNAc, UDP-N-acetyl-α-D-glucosamine, UDP-2-acetamido-2-deoxy-α-D-glucopyranose, UDP-2-acetamido-α-D-glucopyranose, UPD-2-acetamido-α-D-glucopyranose, UDP-GlcNAc
Compound class: nucleoside diphosphate sugar

Chembiochem: a European Journal of Chemical Biology 2006, "Identification of Labile UDP-Ketosugars in Helicobacter pylori, Campylobacter jejuni and Pseudomonas aeruginosa: Key Metabolites used to make Glycan Virulence Factors"
CSDB ID 20012 (all data & tools)

Journal of Bacteriology 2008, "Biosynthesis of a rare di-N-acetylated sugar in the lipopolysaccharide of both Pseudomonas aeruginosa and Bordetella pertussis occurs via an identical scheme despite different gene clusters"
CSDB ID 22756 (all data & tools)
Compound ID: 6856

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Structure type: monomer
Trivial name: UDP-hexos-4-ulose sugar, UDP-2-acetamido-2,6-dideoxy-β-L-arabino-hex-4-ulose, UDP-2-acetamido-2,6-dideoxy-β-L-arabino-hexos-4-ulose, UDP-2-acetamido-2,6-dideoxy-β-L-arabino-4-hexulose
Compound class: nucleoside diphosphate sugar

Chembiochem: a European Journal of Chemical Biology 2006, "Identification of Labile UDP-Ketosugars in Helicobacter pylori, Campylobacter jejuni and Pseudomonas aeruginosa: Key Metabolites used to make Glycan Virulence Factors"
CSDB ID 21190 (all data & tools)
Compound ID: 6857

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Structure type: monomer
Trivial name: UDP-hexos-4-ulose sugar, UDP-2-acetamido-2,6-dideoxy-α-D-xylo-hexos-4-ulose, UPD-2-acetamido-2,6-dideoxy-α-D-xylo-4-hexulose
Compound class: nucleoside diphosphate sugar

Chembiochem: a European Journal of Chemical Biology 2006, "Identification of Labile UDP-Ketosugars in Helicobacter pylori, Campylobacter jejuni and Pseudomonas aeruginosa: Key Metabolites used to make Glycan Virulence Factors"
CSDB ID 21191 (all data & tools)

Compound ID: 6971

Compound 6971

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Compound ID: 6972

Compound 6972

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Compound ID: 7025

Compound 7025

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Compound ID: 7026

Compound 7026

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Compound ID: 7027

Compound 7027

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Compound ID: 7028

Compound 7028

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Compound ID: 7066

Compound 7066

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Compound ID: 7106

-4)-b-D-ManpA-(1- Show graphically

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Structure type: homopolymer ; n=9-20
Trivial name: alginate
Reference(s) to other database(s): GTC:G79479XA, GlycomeDB:25662

Biochemistry 2006, "Pseudomonas aeruginosa C5-mannuronan epimerase: steady-state kinetics and characterization of the product"
CSDB ID 20032 (all data & tools)
Compound ID: 7107

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Structure type: polymer chemical repeating unit ; n=9-20
Trivial name: alginate
Reference(s) to other database(s): GTC:G94988EU, GlycomeDB:25989

Biochemistry 2006, "Pseudomonas aeruginosa C5-mannuronan epimerase: steady-state kinetics and characterization of the product"
CSDB ID 20309 (all data & tools)
Compound ID: 1144

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Structure type: monomer
Trivial name: dTDP-6-deoxy-D-xylohex-4-ulose, dTDP-4-keto-6-deoxy-α-D-glucose, dTDP-6-dideoxy-xylo-hexos-4-ulose, dTDP-6-deoxy-α-D-xylo-hex-4-ulose, dTDP-4-oxo-6-deoxy-α-D-glucose, dTDP-6-deoxy-D-xylo-hex-4-ulopyranose, dTDP-4-keto-6-deoxy-D-glucose, dTDP-4-keto-6-deoxyglucose
Compound class: nucleoside diphosphate sugar

Journal of Molecular Biology 2007, "RmlC, a C3' and C5' carbohydrate epimerase, appears to operate via an intermediate with an unusual twist boat conformation"
CSDB ID 21584 (all data & tools)

Glycobiology 2004, "Biosynthesis of 6-deoxyhexose glycans in bacteria"
CSDB ID 28845 (all data & tools)
Compound ID: 7640

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Structure type: monomer
Trivial name: dTDP-6-dideoxy-lyxo-hexos-4-ulose

Journal of Molecular Biology 2007, "RmlC, a C3' and C5' carbohydrate epimerase, appears to operate via an intermediate with an unusual twist boat conformation"
CSDB ID 22008 (all data & tools)

Compound ID: 7868

Compound 7868

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Compound ID: 7329

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Structure type: monomer
Trivial name: UDP-2-acetamido-2,3-dideoxy-α-D-glucuronic acid, UDP-N-acetyl-D-glucuronic acid, UDP-N-acetyl-α-D-glucosaminuronic acid, UDP-GlcNAcA, UDP-D-GlcNAcA, UDP-D-GlcNAc
Compound class: nucleoside diphosphate sugar

Journal of Bacteriology 2008, "Biosynthesis of a rare di-N-acetylated sugar in the lipopolysaccharide of both Pseudomonas aeruginosa and Bordetella pertussis occurs via an identical scheme despite different gene clusters"
CSDB ID 23329 (all data & tools)
Compound ID: 7330

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Structure type: monomer
Trivial name: UDP-2-acetamido-2-deoxy-D-ribo-hex-3-uluronic acid, UDP-2-aceamido-2-deoxy-α-D-ribo-hex-3-uluronic acid, UDP-3-keto-GlcNAcA, UDP-GlcNAc(3keto)A

Journal of Bacteriology 2008, "Biosynthesis of a rare di-N-acetylated sugar in the lipopolysaccharide of both Pseudomonas aeruginosa and Bordetella pertussis occurs via an identical scheme despite different gene clusters"
CSDB ID 23330 (all data & tools)
Compound ID: 7331

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Structure type: monomer
Trivial name: UDP-2-acetamido-3-amino-2,3-dideoxy-α-D-glucuronic acid, UDP-GlcNAc(3NH2)A, UDP-3-amino-GlcNAcA

Journal of Bacteriology 2008, "Biosynthesis of a rare di-N-acetylated sugar in the lipopolysaccharide of both Pseudomonas aeruginosa and Bordetella pertussis occurs via an identical scheme despite different gene clusters"
CSDB ID 23331 (all data & tools)
Compound ID: 7332

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Structure type: monomer
Trivial name: UDP-2,3-diacetamido-2,3-dideoxy-α-D-glucuronic acid, UDP-GlcNAc(3NAc)A, UDP-Glc-2,3-diNAcA, UDP-D-GlcNAc3NAcA

Journal of Bacteriology 2008, "Biosynthesis of a rare di-N-acetylated sugar in the lipopolysaccharide of both Pseudomonas aeruginosa and Bordetella pertussis occurs via an identical scheme despite different gene clusters"
CSDB ID 23332 (all data & tools)
Compound ID: 7333

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Structure type: monomer
Trivial name: UDP-2,3-diacetamido-2,3-dideoxy-α-D-mannuronic acid, UDP-ManNAc(3NAc)A, UDP-D-ManNAc3NAcA

Journal of Bacteriology 2008, "Biosynthesis of a rare di-N-acetylated sugar in the lipopolysaccharide of both Pseudomonas aeruginosa and Bordetella pertussis occurs via an identical scheme despite different gene clusters"
CSDB ID 23333 (all data & tools)
Compound ID: 8211

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Structure type: oligomer
Aglycon: OCH2CH2CH2SCH2CH2NH2
Trivial name: synthetic disaccharide
Reference(s) to other database(s): GlycomeDB:25838

Current Topics in Medicinal Chemistry 2008, "Recent developments in synthetic oligosaccharide-based bacterial vaccines"
CSDB ID 23499 (all data & tools)
Compound ID: 8212

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Structure type: oligomer
Aglycon: OCH2CH2CH2SCH2CH2NH2
Trivial name: synthetic disaccharide
Reference(s) to other database(s): GlycomeDB:11207

Current Topics in Medicinal Chemistry 2008, "Recent developments in synthetic oligosaccharide-based bacterial vaccines"
CSDB ID 23500 (all data & tools)
Compound ID: 8401

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Structure type: polymer chemical repeating unit ; n=4
Trivial name: B-Band O-antigen
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GlycomeDB:37261

Journal of the Brazilian Chemical Society 2008, "Influence of the B-band O-antigen chain in the structure and electrostatics of the lipopolysaccharide membrane of Pseudomonas aeruginosa"
CSDB ID 23639 (all data & tools)

Compound ID: 8418

Compound 8418

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Compound ID: 8506

Compound 8506

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Compound ID: 8507

Compound 8507

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Compound ID: 7159

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Structure type: monomer
Trivial name: componente of O-antigen, GDP-mannose, GDP-α-D-mannose, GDP-D-Man
Compound class: nucleoside diphosphate sugar

FEBS Journal 2009, "The structural basis for catalytic function of GMD and RMD, two closely related enzymes from the GDP-D-rhamnose biosynthesis pathway"
CSDB ID 23740 (all data & tools)
Compound ID: 7309

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Structure type: monomer
Trivial name: GDP-4-keto-6-deoxy-D-mannose, GDP-4-keto-6-deoxymannose, GDP-6-deoxy-α-D-lyxo-hex-4-ulose, GDP-4-keto-6-deoxy-α-D-mannose, GDP-6-deoxy-D-lyxo-hexos-4-ulose
Compound class: nucleoside diphosphate sugar

FEBS Journal 2009, "The structural basis for catalytic function of GMD and RMD, two closely related enzymes from the GDP-D-rhamnose biosynthesis pathway"
CSDB ID 24052 (all data & tools)

Glycobiology 2004, "Biosynthesis of 6-deoxyhexose glycans in bacteria"
CSDB ID 8949 (all data & tools)
Compound ID: 8516

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Structure type: monomer
Trivial name: gem-diol of GDP-6-deoxy-D-lyxo-hexos-4-ulose

FEBS Journal 2009, "The structural basis for catalytic function of GMD and RMD, two closely related enzymes from the GDP-D-rhamnose biosynthesis pathway"
CSDB ID 24053 (all data & tools)
Compound ID: 8517

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Structure type: monomer
Aglycon: G
Trivial name: GDP-D-rhamnose

FEBS Journal 2009, "The structural basis for catalytic function of GMD and RMD, two closely related enzymes from the GDP-D-rhamnose biosynthesis pathway"
CSDB ID 24054 (all data & tools)

Compound ID: 9115

Compound 9115

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Compound ID: 9116

Compound 9116

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Compound ID: 9117

Compound 9117

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Compound ID: 9118

Compound 9118

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Compound ID: 9119

Compound 9119

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Compound ID: 9120

Compound 9120

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Compound ID: 9204

Compound 9204

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Compound ID: 9466

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Structure type: polymer chemical repeating unit
Trivial name: alginate, alginate polysaccharide
Compound class: EPS
Reference(s) to other database(s): GTC:G61770DS

Frontiers in Microbiology 2011, "Biosynthesis of the Pseudomonas aeruginosa Extracellular Polysaccharides, Alginate, Pel, and Psl"
CSDB ID 26200 (all data & tools)

Chemical Reviews 2022, "Chemical reporters for bacterial glycans: development and applications"
CSDB ID 20836 (all data & tools)

Compound ID: 5936

Compound 5936

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Compound ID: 9685

Compound 9685

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Compound ID: 9686

Compound 9686

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Compound ID: 9710

Compound 9710

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Compound ID: 9711

Compound 9711

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Compound ID: 10271

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Structure type: oligomer
Trivial name: monorhamnolipid RL-1

Current Opinion in Colloid and Interface Science 2002, "Biological amphiphiles (microbial biosurfactants)"
CSDB ID 15005 (all data & tools)
Compound ID: 10272

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Structure type: oligomer
Trivial name: dirhamnolipid RL-2

Current Opinion in Colloid and Interface Science 2002, "Biological amphiphiles (microbial biosurfactants)"
CSDB ID 15006 (all data & tools)
Compound ID: 6351

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Structure type: oligomer
Trivial name: rhamnolipid, rhamnolipid B
Compound class: glycolipid, rhamnolipid

FEMS Microbiology Reviews 2012, "Pseudomonas biofilm matrix composition and niche biology"
CSDB ID 31088 (all data & tools)

Archives of Biochemistry and Biophysics 1965, "Structure of a rhamnolipid from Pseudomonas aeruginosa"
CSDB ID 45654 (all data & tools)

Journal of Agricultural and Food Chemistry 2015, "Rhamnolipids as platform molecules for production of potential anti-zoospore agrochemicals"
CSDB ID 47774 (all data & tools)

Biotechnology Progress 2005, "Rhamnolipid surfactants: an update on the general aspects of these remarkable biomolecules"
CSDB ID 47379 (all data & tools)

Applied Microbiology and Biotechnology 2019, "Microbial biosurfactants for oil spill remediation: pitfalls and potentials"
CSDB ID 49780 (all data & tools)

Compound ID: 10872

Compound 10872

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Compound ID: 10873

Compound 10873

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Compound ID: 10874

Compound 10874

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Compound ID: 10875

Compound 10875

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Compound ID: 10876

Compound 10876

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Compound ID: 10940

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Structure type: monomer
Trivial name: GDP-4-keto-6-deoxy-L-galactose

Glycobiology 2004, "Biosynthesis of 6-deoxyhexose glycans in bacteria"
CSDB ID 28840 (all data & tools)
Compound ID: 7898

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Structure type: monomer
Trivial name: GDP-β-L-fucopyranose, GDP-β-L-fucose, GDP-L-fucose
Compound class: nucleoside diphosphate sugar

Glycobiology 2004, "Biosynthesis of 6-deoxyhexose glycans in bacteria"
CSDB ID 28841 (all data & tools)
Compound ID: 10941

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Structure type: monomer
Trivial name: GDP-L-quinovose

Glycobiology 2004, "Biosynthesis of 6-deoxyhexose glycans in bacteria"
CSDB ID 28842 (all data & tools)
Compound ID: 10942

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Structure type: monomer
Trivial name: GDP-D-rhamnose

Glycobiology 2004, "Biosynthesis of 6-deoxyhexose glycans in bacteria"
CSDB ID 28843 (all data & tools)
Compound ID: 7941

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Structure type: monomer
Trivial name: dTDP-6-deoxy-β-L-lyxo-hex-4-ulose, dTDP-4-keto-6-deoxy-L-mannose

Glycobiology 2004, "Biosynthesis of 6-deoxyhexose glycans in bacteria"
CSDB ID 28847 (all data & tools)
Compound ID: 6967

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Structure type: monomer
Trivial name: dTDP-β-L-rhamnose, dTDP-β-L-rhamnopyranose, dTDP-L-rhamnose

Glycobiology 2004, "Biosynthesis of 6-deoxyhexose glycans in bacteria"
CSDB ID 28848 (all data & tools)

Compound ID: 11291

Compound 11291

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Compound ID: 11292

Compound 11292

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Compound ID: 12621

Compound 12621

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Compound ID: 12623

Compound 12623

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Compound ID: 12624

2HOLau-(1-3)-3HOLau-(1-2)-+ | P-4)-+ | | | Lau-(1-3)-3HOLau-(1-2)-+ | | | | | a-D-Glcp-(1-4)-+ | | | | | | | a-D-Glcp-(1-6)-+ | P-6)-+ EtN-(1---P---P---2)-+ a-Kdop-(2-4)-+ | | | | | | | | | | | a-L-Rhap2Ac-(1-4)-a-L-GalpNAcA-(1-3)-b-D-QuipNAc-(1-3)-a-L-Rhap-(1-3)-b-D-Glcp-(1-3)-a-D-GalpN-(1-3)-L-gro-a-D-manHepp7Cm-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P | | | | L-Ala-(1-2)-+ P-4)-+ 3HODco-(1-3)-+ 3HODco-(1-3)-+

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Compound 12624

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Compound ID: 12660

Compound 12660

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Compound ID: 13374

-4)-b-D-ManpA-(1- Show graphically

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Structure type: homopolymer ; 30000-1300000
Trivial name: algin
Compound class: EPS
Reference(s) to other database(s): GTC:G79479XA

Bioresource Technology 2017, "Engineering aspects of microbial exopolysaccharide production"
CSDB ID 43166 (all data & tools)
Compound ID: 13375

-4)-a-L-GulpA-(1- Show graphically

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Structure type: homopolymer ; 30000-1300000
Trivial name: algin
Compound class: EPS
Reference(s) to other database(s): GTC:G45430OC

Bioresource Technology 2017, "Engineering aspects of microbial exopolysaccharide production"
CSDB ID 43167 (all data & tools)
Compound ID: 13551

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Structure type: structural motif or average structure
Trivial name: alginate
Reference(s) to other database(s): GTC:G08476TB

Current Opinion in Structural Biology 2015, "Insights into the structure and function of membrane-integrated processive glycosyltransferases"
CSDB ID 48512 (all data & tools)
Compound ID: 14254

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Structure type: monomer ; 504
Compound class: glycolipid, rhamnolipid

Journal of Agricultural and Food Chemistry 2015, "Rhamnolipids as platform molecules for production of potential anti-zoospore agrochemicals"
CSDB ID 47772 (all data & tools)
Compound ID: 14255

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Structure type: monomer ; 334
Compound class: glycolipid, rhamnolipid

Journal of Agricultural and Food Chemistry 2015, "Rhamnolipids as platform molecules for production of potential anti-zoospore agrochemicals"
CSDB ID 47773 (all data & tools)
Compound ID: 14256

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Structure type: oligomer ; 480
Compound class: glycolipid, rhamnolipid

Journal of Agricultural and Food Chemistry 2015, "Rhamnolipids as platform molecules for production of potential anti-zoospore agrochemicals"
CSDB ID 47775 (all data & tools)

Compound ID: 14257

Compound 14257

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Compound ID: 14316

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Structure type: oligomer
Compound class: rhamnolipid

Letters in Applied Microbiology 2015, "Biosurfactants in cosmetics and biopharmaceuticals"
CSDB ID 48221 (all data & tools)
Compound ID: 14317

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Structure type: oligomer
Compound class: rhamnolipid

Letters in Applied Microbiology 2015, "Biosurfactants in cosmetics and biopharmaceuticals"
CSDB ID 48222 (all data & tools)
Compound ID: 14326

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Structure type: oligomer
Compound class: rhamnolipid

European Journal of Organic Chemistry 1998, "An efficient synthesis of (R)-3-{(R)-3-[2-O-(α-L-rhamnopyranosyl)-α-L-rhamnopyranosyl]oxydecanoyl}oxydecanoic acid, a rhamnolipid from Pseudomonas aeruginosa"
CSDB ID 49349 (all data & tools)
Compound ID: 14327

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Structure type: oligomer ; 673 [M+Na]+
Compound class: rhamnolipid

European Journal of Organic Chemistry 1998, "An efficient synthesis of (R)-3-{(R)-3-[2-O-(α-L-rhamnopyranosyl)-α-L-rhamnopyranosyl]oxydecanoyl}oxydecanoic acid, a rhamnolipid from Pseudomonas aeruginosa"
CSDB ID 49350 (all data & tools)
Compound ID: 6350

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Structure type: monomer
Trivial name: rhamnolipid
Compound class: glycolipid, rhamnolipid

Biotechnology Progress 2005, "Rhamnolipid surfactants: an update on the general aspects of these remarkable biomolecules"
CSDB ID 47853 (all data & tools)
Compound ID: 14329

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Structure type: oligomer
Compound class: rhamnolipid

Biotechnology Progress 2005, "Rhamnolipid surfactants: an update on the general aspects of these remarkable biomolecules"
CSDB ID 49215 (all data & tools)
Compound ID: 14330

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Structure type: monomer
Compound class: rhamnolipid

Biotechnology Progress 2005, "Rhamnolipid surfactants: an update on the general aspects of these remarkable biomolecules"
CSDB ID 49216 (all data & tools)

Compound ID: 14442

Compound 14442

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Compound ID: 15028

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Structure type: structural motif or average structure
Trivial name: Pel
Compound class: EPS
Reference(s) to other database(s): GTC:G18528HB

Annual Review of Microbiology 2020, "Assembly of Bacterial Capsular Polysaccharides and Exopolysaccharides"
CSDB ID 7662 (all data & tools)

Compound ID: 15029

Compound 15029

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Compound ID: 15686

Compound 15686

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Compound ID: 15726

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Structure type: structural motif or average structure
Trivial name: Pel
Compound class: EPS

Cell Reports 2021, "Pseudomonas aeruginosa aggregates in cystic fibrosis sputum produce exopolysaccharides that likely impede current therapies"
CSDB ID 10869 (all data & tools)
Compound ID: 15876

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Structure type: structural motif or average structure
Trivial name: alginate
Compound class: EPS

International Journal of Biological Macromolecules 2021, "Bacterial exopolysaccharides: Chemical structures, gene clusters and genetic engineering"
CSDB ID 9780 (all data & tools)

Compound ID: 16104

Compound 16104

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Compound ID: 16120

Compound 16120

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Compound ID: 8856

Compound 8856

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Compound ID: 16625

Compound 16625

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Compound ID: 16626

Compound 16626

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Compound ID: 16644

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Structure type: structural motif or average structure
Trivial name: alginate
Compound class: EPS

World Journal of Microbiology and Biotechnology 2023, "Recent advances in the biological activities of microbial exopolysaccharides"
CSDB ID 24830 (all data & tools)

Compound ID: 16645

Compound 16645

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Compound ID: 16708

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Structure type: structural motif or average structure
Trivial name: alginate
Compound class: EPS

Heliyon 2023, "Microbial exopolysaccharides in the biomedical and pharmaceutical industries"
CSDB ID 27062 (all data & tools)

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