Translate from GlycoCT to CSDB

GlycoCT is a carbohydrate structure description language developed within EurocarbDB and Glycome-DB project. To translate structure from GlycoCT please use API at the following address: http://csdb.glycoscience.ru/database/core/convert_api.php. The GlycoCT encoded structure should be passed as POST or GET parameter named 'glycoct'. If you use GET, the GlycoCT code should be URL-encoded in one line. The output contains: CSDB encoded structure (line 1), molecule type (line2), error messages if present (lines 3+), blank line and a copy of input Glyco-CT code, for example:

POST or GET input (example):
glycoct=
"RES
1r:r1
REP
REP1:3o(6+1)2n=-1--1
RES
2s:phosphate
3b:a-dman-HEX-1:5
4s:n-acetyl
5s:acetyl
LIN
1:2n(1+1)3o
2:3d(2+1)4n
3:3o(3|4+1)5n"

glycan_only=
"on" (off by default)
=> Web-service output:
<HTTP headers>

CSDB Linear: -6)[Ac(1-?),Ac(1-2)]aDManpN(1-P-
Molecule type: CHEM
Errors: fuzzy outgoing linkage position was replaced with a wildcard for linkage 3

Input:
<copy of the processed glycoct input parameter (multiline)>

Test web-service using GET: http://csdb.glycoscience.ru/database/core/convert_api.php?glycoct=...

Below you can try this translation online:

Ignore non-carbohydrate moieties

Translate from CSDB


(blankspaces not allowed)

Destination format:  

To translate structure from CSDB in automated manner please use API at the following address: http://csdb.glycoscience.ru/database/core/convert_api.php. The structure in CSDB Linear language should be passed as POST or GET parameter named 'csdb'. If you use GET, the CSDB code should be URL-encoded. The destination format should be specified in 'format' parameter. The output contains: the destination format name and the translated structure (line 1), error messages if present (lines 2+), blank line and a copy of input CSDB code, for example:

POST or GET input (example):
csdb=
"aDGlcp(1-2)aLRhap"

format=
"glycam" (smiles|wurcs|glycam)
=> Web-service output:
<HTTP headers>

GLYCAM: a-D-Glcp-(1-2)-a-L-Rhap-OH
Errors: none

Input:aDGlcp(1-2)aLRhap

Test web-service using GET: http://csdb.glycoscience.ru/database/core/convert_api.php?csdb=...&format=...


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