#GTR ID Enzyme name Enzyme group Enzyme Genbank ID Derived ID mark Enzyme Uniprot ID Derived ID mark CAZY family Gene name Gene Genbank ID Derived ID mark Gene cluster Full structure CSDB structure ID Side product CSDB structure ID Full structure Full structure is fragment (0|1) Synthesized bond Synthesized bond location (from root ~ subst position) Donor structure ID Substrate structure Confirmation status Methods used Notes Molecule role Molecule is a model of role (0|1) Molecule is a precursor of role (0|1) Main CSDB record ID Additional CSDB record IDs CSDB organism IDs Organism names Organs and tissues References (;-separated)
3000 PBP1A O66874 GT51 mrcA 1193936 35244 Ac(1-2)bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]bXMurp(1-4)[Ac(1-2)]bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]aXMurp(1-P-P-1)Subst // Subst = 3,7,11,15,19,23,27-heptamethyl-octacosa-2Z,6Z,10Z,14Z,18E,22E,26-heptaen-1-ol 0 bDGlcpN(1-4)bXMurp ?~4 Ac(1-2)bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]aXMurp(1-P-P-1)Subst // Subst = 3,7,11,15,19,23,27-heptamethyl-octacosa-2Z,6Z,10Z,14Z,18E,22E,26-heptaen-1-ol Ac(1-2)bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]aXMurp(1-P-P-1)Subst // Subst = 3,7,11,15,19,23,27-heptamethyl-octacosa-2Z,6Z,10Z,14Z,18E,22E,26-heptaen-1-ol in vitro in vitro (purified protein), mutation (in recombinant protein) The PGT domain of PBP1A was used. N of murein units varied from 2 to >20. 0 0 17331 Aquifex aeolicus Barrett et al. 2007 (doi: 10.1074/jbc.M705440200)
3001 PBP1A O66874 GT51 mrcA 1193936 35246 Ac(1-2)bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]bXMurp(1-4)[Ac(1-2)]bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]bXMurp(1-4)[Ac(1-2)]bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]bXMurp(1-4)[Ac(1-2)]bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]aXMurp(1-P-P-1)Subst // Subst = 3,7,11,15,19,23,27-heptamethyl-octacosa-2Z,6Z,10Z,14Z,18E,22E,26-heptaen-1-ol 0 bDGlcpN(1-4)bXMurp ?~4 Ac(1-2)bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]bXMurp(1-4)[Ac(1-2)]bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]aXMurp(1-P-P-1)Subst // Subst = 3,7,11,15,19,23,27-heptamethyl-octacosa-2Z,6Z,10Z,14Z,18E,22E,26-heptaen-1-ol Ac(1-2)bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]bXMurp(1-4)[Ac(1-2)]bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]aXMurp(1-P-P-1)Subst // Subst = 3,7,11,15,19,23,27-heptamethyl-octacosa-2Z,6Z,10Z,14Z,18E,22E,26-heptaen-1-ol in vitro in vitro (purified protein) The PGT domain of PBP1A was used. N of murein units was 4, 6, and 8; short products accumulated before longer products appeared. 0 0 17331 Aquifex aeolicus Barrett et al. 2007 (doi: 10.1074/jbc.M705440200)
3002 PBP1A O66874 GT51 mrcA 1193936 35249 b?Galp(1-4)[Ac(1-2)]bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]bXMurp(1-4)[Ac(1-2)]bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]aXMurp(1-P-P-1)Subst // Subst = 3,7,11,15,19,23,27,31,35,39,43-undecamethyl-tetratetraconta-2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E,42-undecaen-1-ol 0 bDGlcpN(1-4)bXMurp ?~4 Ac(1-2)bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]aXMurp(1-P-P-1)Subst // Subst = 3,7,11,15,19,23,27,31,35,39,43-undecamethyl-tetratetraconta-2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E,42-undecaen-1-ol b?Galp(1-4)[Ac(1-2)]bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]aXMurp(1-P-P-1)Subst // Subst = 3,7,11,15,19,23,27,31,35,39,43-undecamethyl-tetratetraconta-2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E,42-undecaen-1-ol in vitro in vitro (purified protein) N of murein units varied from 3 to higher. The study was aimed at revealing the direction of chain elongation. 0 0 17331 Aquifex aeolicus Perlstein et al. 2007 (doi: 10.1021/ja075965y)
3003 PBP2 Q9R744 GT51 35249 b?Galp(1-4)[Ac(1-2)]bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]bXMurp(1-4)[Ac(1-2)]bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]aXMurp(1-P-P-1)Subst // Subst = 3,7,11,15,19,23,27,31,35,39,43-undecamethyl-tetratetraconta-2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E,42-undecaen-1-ol 0 bDGlcpN(1-4)bXMurp ?~4 Ac(1-2)bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]aXMurp(1-P-P-1)Subst // Subst = 3,7,11,15,19,23,27,31,35,39,43-undecamethyl-tetratetraconta-2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E,42-undecaen-1-ol b?Galp(1-4)[Ac(1-2)]bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]aXMurp(1-P-P-1)Subst // Subst = 3,7,11,15,19,23,27,31,35,39,43-undecamethyl-tetratetraconta-2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E,42-undecaen-1-ol in vitro in vitro (purified protein) N of murein units varied from 3 to higher. The study was aimed at revealing the direction of chain elongation. 0 0 976 Staphylococcus aureus Perlstein et al. 2007 (doi: 10.1021/ja075965y)
3004 PBP2 Q9R744 GT51 35244 Ac(1-2)bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]bXMurp(1-4)[Ac(1-2)]bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]aXMurp(1-P-P-1)Subst // Subst = 3,7,11,15,19,23,27-heptamethyl-octacosa-2Z,6Z,10Z,14Z,18E,22E,26-heptaen-1-ol 0 bDGlcpN(1-4)bXMurp ?~4 Ac(1-2)bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]aXMurp(1-P-P-1)Subst // Subst = 3,7,11,15,19,23,27-heptamethyl-octacosa-2Z,6Z,10Z,14Z,18E,22E,26-heptaen-1-ol Ac(1-2)bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]aXMurp(1-P-P-1)Subst // Subst = 3,7,11,15,19,23,27-heptamethyl-octacosa-2Z,6Z,10Z,14Z,18E,22E,26-heptaen-1-ol in vitro in vitro (purified protein) Lipid II is utilized as donor/substrate. Lipid II derivatives may vary. The limiting length was about 15 units (Lipid 30). 0 0 976 Staphylococcus aureus Wang et al. 2008 (doi: 10.1021/ja806016y); Barrett et al. 2005 (doi: 10.1128/JB.187.6.2215-2217.2005)
3005 PBP2A X5NX71 35244 Ac(1-2)bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]bXMurp(1-4)[Ac(1-2)]bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]aXMurp(1-P-P-1)Subst // Subst = 3,7,11,15,19,23,27-heptamethyl-octacosa-2Z,6Z,10Z,14Z,18E,22E,26-heptaen-1-ol 0 bDGlcpN(1-4)bXMurp ?~4 Ac(1-2)bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]aXMurp(1-P-P-1)Subst // Subst = 3,7,11,15,19,23,27-heptamethyl-octacosa-2Z,6Z,10Z,14Z,18E,22E,26-heptaen-1-ol Ac(1-2)bDGlcpN(1-4)[xDAla?(2-1)xDAla?(2-1)xLLys(2-5)xDGlu(2-1)xLAla?(2-8)]aXMurp(1-P-P-1)Subst // Subst = 3,7,11,15,19,23,27-heptamethyl-octacosa-2Z,6Z,10Z,14Z,18E,22E,26-heptaen-1-ol in vitro in vitro (purified truncated protein) 0 0 451 Enterococcus faecalis Wang et al. 2008 (doi: 10.1021/ja806016y)