Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Host organism: (Actinopterygii); Homo sapiens
Associated disease: motile aeromonad septicemia (MAS);
urinary tract infections (UTI) [ICD11:
GC08 
];
wound infections [ICD11:
NF0A.3 
];
septicemia [ICD11:
MA15.Y 
]
The structure was elucidated in this paperNCBI PubMed ID: 31035397Publication DOI: 10.3390/md17050254Journal NLM ID: 101213729Publisher: Basel, Switzerland: Molecular Diversity Preservation International
Correspondence: aturska

hektor.umcs.lublin.pl
Institutions: Department of Genetics and Microbiology, Maria Curie-Skłodowska University in Lublin, Akademicka 19, Lublin 20-033, Poland, Department of Fish Diseases, National Veterinary Research Institute, Partyzantów 57, Puławy 24-100, Poland
Lipopolysaccharide (LPS) is the major glycolipid and virulence factor of Gram-negative bacteria, including Aeromonas spp. The O-specific polysaccharide (O-PS, O-chain, O-antigen), i.e., the surface-exposed part of LPS, which is a hetero- or homopolysaccharide, determines the serospecificity of bacterial strains. Here, chemical analyses, mass spectrometry, and 1H and 13C NMR spectroscopy techniques were employed to study the O-PS of Aeromonas hydrophila strain JCM 3968, serogroup O6. MALDI-TOF mass spectrometry revealed that the LPS of A. hydrophila JCM 3968 has a hexaacylated lipid A with conserved architecture of the backbone and a core oligosaccharide composed of Hep6Hex1HexN1HexNAc1Kdo1P1. To liberate the O-antigen, LPS was subjected to mild acid hydrolysis followed by gel-permeation-chromatography and revealed two O-polysaccharides that were found to contain a unique sugar 4-amino-4,6-dideoxy-l-mannose (N-acetyl-l-perosamine, l-Rhap4NAc), which may further determine the specificity of the serogroup. The first O-polysaccharide (O-PS1) was built up of trisaccharide repeating units composed of one α-d-GalpNAc and two α-l-Rhap4NAc residues, whereas the other one, O-PS2, is an α1→2 linked homopolymer of l-Rhap4NAc. The following structures of the O-polysaccharides were established: O-PS1 →3)-α-l-Rhap4NAc-(1→4)-α-d-GalpNAc-(1→3)-α-l-Rhap4NAc-(1→, O-PS2 →2)-α-l-Rhap4NAc-(1→. The present paper is the first work that reveals the occurrence of perosamine in the l-configuration as a component of bacterial O-chain polysaccharides.
O-antigen, NMR spectroscopy, O-polysaccharide, endotoxin, structure elucidation, lipopolysaccharide (LPS), MALDI-TOF mass spectrometry, Aeromonas hydrophila, L-perosamine, l-Rha4NAc
Structure type: polymer chemical repeating unit
Location inside paper: abstract, table 2, O-PS1
Compound class: O-polysaccharide
Contained glycoepitopes: IEDB_130648,IEDB_137473,IEDB_1391961,IEDB_141584,IEDB_885822
Methods: 13C NMR, 1H NMR, methylation, GLC-MS, NMR-2D, SDS-PAGE, sugar analysis, GLC, MALDI-TOF MS, GPC
Related record ID(s): 720
NCBI Taxonomy refs (TaxIDs): 644Reference(s) to other database(s): GTC:G32007NJ
Show glycosyltransferases
NMR conditions: in D2O at 305 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3,4,4 Ac 175.6-176.0 23.3-23.4
3,4 aLRhap4N 103.0 70.3 78.0 52.5 69.4 18.0
3,2 Ac 175.6-176.0 23.3-23.4
3 aDGalpN 95.0 50.9 69.2 77.2 72.7 62.2
4 Ac 175.6-176.0 23.3-23.4
aLRhap4N 103.0 67.0 74.3 52.3 69.4 18.0
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3,4,4 Ac - 2.05-2.06
3,4 aLRhap4N 5.17 4.20 3.97 3.97 3.92 1.23
3,2 Ac - 2.05-2.06
3 aDGalpN 5.04 4.26 3.97 4.12 3.90 3.74-3.81
4 Ac - 2.05-2.06
aLRhap4N 5.00 3.91 3.94 3.98 3.92 1.23
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3,4,4 Ac 23.3-23.4/2.05-2.06
3,4 aLRhap4N 103.0/5.17 70.3/4.20 78.0/3.97 52.5/3.97 69.4/3.92 18.0/1.23
3,2 Ac 23.3-23.4/2.05-2.06
3 aDGalpN 95.0/5.04 50.9/4.26 69.2/3.97 77.2/4.12 72.7/3.90 62.2/3.74-3.81
4 Ac 23.3-23.4/2.05-2.06
aLRhap4N 103.0/5.00 67.0/3.91 74.3/3.94 52.3/3.98 69.4/3.92 18.0/1.23
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 3,4,4 | Ac |
| 2.05 2.06 | |
| 3,4 | aLRhap4N | 5.17 | 4.20 | 3.97 | 3.97 | 3.92 | 1.23 |
| 3,2 | Ac |
| 2.05 2.06 | |
| 3 | aDGalpN | 5.04 | 4.26 | 3.97 | 4.12 | 3.90 | 3.74 3.81 |
| 4 | Ac |
| 2.05 2.06 | |
| | aLRhap4N | 5.00 | 3.91 | 3.94 | 3.98 | 3.92 | 1.23 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 3,4,4 | Ac | 175.6 176.0 | 23.3 23.4 | |
| 3,4 | aLRhap4N | 103.0 | 70.3 | 78.0 | 52.5 | 69.4 | 18.0 |
| 3,2 | Ac | 175.6 176.0 | 23.3 23.4 | |
| 3 | aDGalpN | 95.0 | 50.9 | 69.2 | 77.2 | 72.7 | 62.2 |
| 4 | Ac | 175.6 176.0 | 23.3 23.4 | |
| | aLRhap4N | 103.0 | 67.0 | 74.3 | 52.3 | 69.4 | 18.0 |
|
There is only one chemically distinct structure: