Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Host organism: Homo sapiens
Associated disease: cholera [ICD11:
1A00 
, ICD11:
XN7N1 
]
The structure was elucidated in this paperNCBI PubMed ID: 30763794Publication DOI: 10.1016/j.carres.2019.01.007Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: A.V. Perepelov <andreivperepelov

gmail.com>
Institutions: N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia, TEDA Institure of Biological Sciences and Biotechnology, Nankai University, TEDA, Tianjin, China
The O-polysaccharide (O-antigen) of Vibrio cholerae O14 was studied using chemical analyses and 1D and 2D NMR spectroscopy. The following structure of the repeating unit of the O-antigen was established: where GlcpN(SHb) indicates 2-deoxy-2-[(S)-3-hydroxybutanoylamino]-d-glucose. We found that Vibrio cholerae O14 is similar to that of O-polysaccharide of Azospirillum brasilense S17, which has been reported earlier. Moreover, we predicted functions of all the genes in the O-antigen gene cluster according to the structure established. Our study enriches the existing O-antigen database of Vibrio cholerae, and further facilitates the bacterial serotype identification.
Lipopolysaccharide, O-antigen, O-specific polysaccharide, bacterial polysaccharide structure, Vibrio cholerae, O-antigen gene cluster, GRASS
Structure type: polymer chemical repeating unit
Location inside paper: abstract, table 1, p.70, chart 1, O14
Compound class: O-polysaccharide, O-antigen
Contained glycoepitopes: IEDB_136105,IEDB_141807,IEDB_151531,IEDB_225177,IEDB_885813,IEDB_885823
Methods: 13C NMR, 1H NMR, NMR-2D, DNA sequencing, sugar analysis, acid hydrolysis, GLC, Smith degradation, GPC, delipidation, function analysis of gene clusters, function analysis of gene cluster, 13C NMR analysis by GRASS
Comments, role: V. cholerae O14 type strain (laboratory stock number G5476); minor O-unit.
Related record ID(s): 2256, 2257, 2258
NCBI Taxonomy refs (TaxIDs): 666
Show glycosyltransferases
NMR conditions: in D2O at 303 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3 aLRhap 98.2 72.0 71.8 80.0 68.8 17.9
2 Ac 175.2 23.5
4,2 lS3HOBut 176.1 46.4 66.2 23.3
4 30%bDGlcpN 101.7 57.1 74.9 72.5 77.3 63.3
bDManpN 100.7 51.1 75.9 72.2 77.1 61.3
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3 aLRhap 4.88 3.73 3.73 3.82 4.32 1.22
2 Ac - 2.05
4,2 lS3HOBut - 2.36-2.47 4.18 1.20
4 30%bDGlcpN 4.47 3.65 3.51 3.10 3.37 3.61-3.91
bDManpN 4.95 4.65 3.90 3.78 3.33 3.77-3.94
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3 aLRhap 98.2/4.88 72.0/3.73 71.8/3.73 80.0/3.82 68.8/4.32 17.9/1.22
2 Ac 23.5/2.05
4,2 lS3HOBut 46.4/2.36-2.47 66.2/4.18 23.3/1.20
4 30%bDGlcpN 101.7/4.47 57.1/3.65 74.9/3.51 72.5/3.10 77.3/3.37 63.3/3.61-3.91
bDManpN 100.7/4.95 51.1/4.65 75.9/3.90 72.2/3.78 77.1/3.33 61.3/3.77-3.94
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 3 | aLRhap | 4.88 | 3.73 | 3.73 | 3.82 | 4.32 | 1.22 |
| 2 | Ac |
| 2.05 | |
| 4,2 | lS3HOBut |
| 2.36 2.47 | 4.18 | 1.20 | |
| 4 | 30%bDGlcpN | 4.47 | 3.65 | 3.51 | 3.10 | 3.37 | 3.61 3.91 |
| | bDManpN | 4.95 | 4.65 | 3.90 | 3.78 | 3.33 | 3.77 3.94 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 3 | aLRhap | 98.2 | 72.0 | 71.8 | 80.0 | 68.8 | 17.9 |
| 2 | Ac | 175.2 | 23.5 | |
| 4,2 | lS3HOBut | 176.1 | 46.4 | 66.2 | 23.3 | |
| 4 | 30%bDGlcpN | 101.7 | 57.1 | 74.9 | 72.5 | 77.3 | 63.3 |
| | bDManpN | 100.7 | 51.1 | 75.9 | 72.2 | 77.1 | 61.3 |
|
There is only one chemically distinct structure: