Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Associated disease: infection due to Shigella boydii [ICD11:
XN8RN 
]
The structure was elucidated in this paperNCBI PubMed ID: 2447897Journal NLM ID: 7804941Publisher: Moskva: Nauka
Institutions: N.D. Zelinsky Institute of Organic Chemistry, Academy of Sciences of the USSR, Moscow, Russia
A specific acidic polysaccharide has been isolated from the Shigella boydii type 14 antigenic lipopolysaccharide after mild hydrolysis followed by chromatography on Sephadex G-50. The polysaccharide consists of the D-glucuronic acid, 2-acetamido-2-deoxy-D-glucose and D-galactose residues in the ratio 1:1:3. From the results of methylation analysis and partial acid hydrolysis, the structure of the repeating unit of the specific polysaccharide was deduced as follows: (-6DGalp α 1-4DGlcAp β 1-6DGalp β 1-4DGalp β 1-4DGlcNAcp β 1-)n. The 13C NMR spectra of native and carboxyl-reduced polysaccharides, as well as of oligosaccharides produced by partial acid hydrolysis fully confirmed the proposed structure. The approach was suggested to determine the type of substitution of uronic acid moieties in polysaccharide chain by use of chromato-mass-spectrometry of acetylated methyl esters of partially methylated aldonic acids. Serological characteristics of Sh. boydii LPS type 14 and its modified derivatives are discussed
Structure type: polymer chemical repeating unit
Location inside paper: abstract, p.1262
Compound class: O-polysaccharide, O-antigen
Contained glycoepitopes: IEDB_115136,IEDB_130646,IEDB_135813,IEDB_136044,IEDB_136906,IEDB_137340,IEDB_137472,IEDB_140108,IEDB_140122,IEDB_140630,IEDB_141794,IEDB_141807,IEDB_151528,IEDB_151531,IEDB_158533,IEDB_190606,IEDB_221845,IEDB_423153,SB_165,SB_166,SB_187,SB_195,SB_30,SB_7,SB_88
Methods: 13C NMR
Related record ID(s): 23056, 108640
NCBI Taxonomy refs (TaxIDs): 621Reference(s) to other database(s): GTC:G17781ZM, GlycomeDB:
3526
Show glycosyltransferases
NMR conditions: in D2O at 353(C) K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
4,4,6,4 aDGalp 100.1 69.3 69.5 70.0 69.5 67.7
4,4,6 bDGlcpA 103.8 73.7 75.3 77.9 76.8 175.1
4,4 bDGalp 105.1 72.2 73.7 69.5 74.5 70.7
4 bDGalp 103.8 72.2 73.8 78.0 75.9 61.7
2 Ac 175.5 23.2
bDGlcpN 102.1 56.0 74.5 79.6 75.6 61.0
1H NMR data:
missing...
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 4,4,6,4 | aDGalp | 100.1 | 69.3 | 69.5 | 70.0 | 69.5 | 67.7 |
| 4,4,6 | bDGlcpA | 103.8 | 73.7 | 75.3 | 77.9 | 76.8 | 175.1 |
| 4,4 | bDGalp | 105.1 | 72.2 | 73.7 | 69.5 | 74.5 | 70.7 |
| 4 | bDGalp | 103.8 | 72.2 | 73.8 | 78.0 | 75.9 | 61.7 |
| 2 | Ac | 175.5 | 23.2 | |
| | bDGlcpN | 102.1 | 56.0 | 74.5 | 79.6 | 75.6 | 61.0 |
|
There is only one chemically distinct structure: