Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Associated disease: infection due to Escherichia coli [ICD11:
XN6P4 
]
The structure was elucidated in this paperPublication DOI: 10.1016/j.carres.2016.09.014Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: yknirel

gmail.com
Institutions: N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia, Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, TEDA Institute of Biological Sciences and Biotechnology, Nankai University, TEDA, Tianjin, China
O-polysaccharides (OPSs) were obtained by mild acid degradation of the lipopolysaccharides of Escherichia coli O182-O187, and their structures were established by sugar analysis, Smith degradation, and 1H and 13C NMR spectroscopy. In addition to the monosaccharides that occur often in E. coli OPSs (d-Glc, d-Gal, d-Man, d-GlcNAc, d-GalNAc, d-GlcA, l-Fuc, d-Rib), a number of less common components were identified as the OPS constituents, including 2-acetamido-2-deoxy-l-quinovose and 4-deoxy-4-[(S)-3-hydroxybutanoyl-l-alanyl]-d-quinovose (O186), 3-acetamido-3-deoxy-d-fucose (O187), 3-deoxy-3-[(R)-3-hydroxybutanoyl]-d-fucose (O184), and 2,3-diacetamido-2,3-dideoxy-l-rhamnose (O182). The OPS structures of E. coli O183 and O182 are identical to those of the OPS of Shigella boydii type 10 and the capsular polysaccharide of E. coli K48, respectively. The OPSs of E. coli O186 and O123 are closely related differing in the presence of a Glc residue in the former in place of a GlcNAc residue in the latter. The O-antigen gene clusters of the bacteria studied were analyzed and their contents were found to be consistent with the OPS structures. Predicted glycosyltransferases encoded in the gene clusters were tentatively assigned to glycosidic linkages based on similarities to sequences of other E. coli O-serogroups available from GenBank and taking into account the OPS structures established.
Lipopolysaccharide, O-antigen, Escherichia coli, bacterial polysaccharide structure, O-antigen gene cluster
Structure type: polymer chemical repeating unit
Location inside paper: p.63, chart 1, table 2, E. coli O184
Compound class: O-polysaccharide, O-antigen
Contained glycoepitopes: IEDB_130648,IEDB_130701,IEDB_136045,IEDB_137473,IEDB_1391961,IEDB_141584,IEDB_142489,IEDB_144562,IEDB_144983,IEDB_152206,IEDB_152214,IEDB_174333,IEDB_885822,IEDB_983930,SB_44,SB_67,SB_72,SB_86
Methods: 13C NMR, 1H NMR, NMR-2D, sugar analysis, GLC, Smith degradation, GPC, mild acid degradation, function analysis of gene clusters
Comments, role: O-deacetylated OPS
Related record ID(s): 11311, 11715, 11716, 11717, 11718, 11719, 11720, 11721, 11722, 11723, 11725, 11726, 11727, 11728
NCBI Taxonomy refs (TaxIDs): 562
Show glycosyltransferases
NMR conditions: in D2O at 303 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3,3,3,3 lR3HOBut 175.4 46.0 66.2 23.7
3,3,3 aDFucp3N 96.7 69.8 50.2 71.9 68.5 16.5
3,3 aDManp 102.9 71.2 76.0 68.7 74.7 62.1
3 aLFucp 102.6 68.7 78.4 72.7 68.3 16.7
2 Ac 176.2 23.7
aDGalpN 94.7 49.5 77.3 70.0 72.7 62.1
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3,3,3,3 lR3HOBut - 2.45-2.53 4.23 1.25
3,3,3 aDFucp3N 5.62 3.92 4.49 3.77 4.23 1.23
3,3 aDManp 5.11 4.19 4.07 3.74 3.79 3.71-3.86
3 aLFucp 4.93 3.84 4.01 3.96 4.10 1.19
2 Ac - 2.06
aDGalpN 5.22 4.45 3.73 4.00 3.85 3.76-3.79
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3,3,3,3 lR3HOBut 46.0/2.45-2.53 66.2/4.23 23.7/1.25
3,3,3 aDFucp3N 96.7/5.62 69.8/3.92 50.2/4.49 71.9/3.77 68.5/4.23 16.5/1.23
3,3 aDManp 102.9/5.11 71.2/4.19 76.0/4.07 68.7/3.74 74.7/3.79 62.1/3.71-3.86
3 aLFucp 102.6/4.93 68.7/3.84 78.4/4.01 72.7/3.96 68.3/4.10 16.7/1.19
2 Ac 23.7/2.06
aDGalpN 94.7/5.22 49.5/4.45 77.3/3.73 70.0/4.00 72.7/3.85 62.1/3.76-3.79
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 3,3,3,3 | lR3HOBut |
| 2.45 2.53 | 4.23 | 1.25 | |
| 3,3,3 | aDFucp3N | 5.62 | 3.92 | 4.49 | 3.77 | 4.23 | 1.23 |
| 3,3 | aDManp | 5.11 | 4.19 | 4.07 | 3.74 | 3.79 | 3.71 3.86 |
| 3 | aLFucp | 4.93 | 3.84 | 4.01 | 3.96 | 4.10 | 1.19 |
| 2 | Ac |
| 2.06 | |
| | aDGalpN | 5.22 | 4.45 | 3.73 | 4.00 | 3.85 | 3.76 3.79 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 3,3,3,3 | lR3HOBut | 175.4 | 46.0 | 66.2 | 23.7 | |
| 3,3,3 | aDFucp3N | 96.7 | 69.8 | 50.2 | 71.9 | 68.5 | 16.5 |
| 3,3 | aDManp | 102.9 | 71.2 | 76.0 | 68.7 | 74.7 | 62.1 |
| 3 | aLFucp | 102.6 | 68.7 | 78.4 | 72.7 | 68.3 | 16.7 |
| 2 | Ac | 176.2 | 23.7 | |
| | aDGalpN | 94.7 | 49.5 | 77.3 | 70.0 | 72.7 | 62.1 |
|
There is only one chemically distinct structure: