Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Associated disease: infection due to Escherichia coli [ICD11:
XN6P4 
]
The structure was elucidated in this paperPublication DOI: 10.1007/s11172-017-1889-2Journal NLM ID: 7505544Publisher: Moscow: Nauka
Correspondence: yknirel

gmail.com; liubin1981

nankai.edu.cn
Institutions: N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia, Institute of Biological Sciences and Biotechnology, Tianjin Economic-Technological Development Area (TEDA), Nankai University, Tianjin, China
The structure of the O-specific polysaccharide (O-antigen) from Escherichia coli O92 was established. The acid-labile polysaccharide was produced by O-deacylation of the lipopolysaccharide under mild alkaline conditions. The methylation analysis combined with 1D and 2D 1H and 13C NMR spectroscopy demonstrated that the O-specific polysaccharide chain of the lipopolysaccharide is a linear fructan composed of mono-O-acetylated disaccharide repeating units having the structure →1)-b-d-Fruf3Ac-(2→3)-b-d-Fruf-(2→. To the best of our knowledge, this fructan has been hitherto unknown in bacteria.
Escherichia coli, ipopolysaccharide, O-antigen gene cluster, fructan, structure of the O-specific polysaccharide
Structure type: polymer chemical repeating unit
Location inside paper: abstract, p.1305
Compound class: O-polysaccharide, O-antigen
Methods: 13C NMR, 1H NMR, methylation, NMR-2D, GC-MS, sugar analysis, acid hydrolysis, GC, mild alkaline degradation, GPC, bioinformatic analysis, mild acid degradation
Comments, role: E. coli O92 laboratory number G4216;
Related record ID(s): 12226
NCBI Taxonomy refs (TaxIDs): 562Reference(s) to other database(s): GTC:G47768MT
Show glycosyltransferases
NMR conditions: in D2O at 343 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3,3 Ac 173.8 21.2
3 bDFruf 61.6 103.8 78.9 72.5 82.2 61.5
bDFruf 63.6 105.4 78.1 75.5 82.3 63.0
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3,3 Ac - 2.13
3 bDFruf 3.56-3.70 - 5.42 4.40 3.91 3.75-3.86
bDFruf 3.76-3.76 - 4.48 4.14 3.86 3.63-3.85
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3,3 Ac 21.2/2.13
3 bDFruf 61.6/3.56-3.70 78.9/5.42 72.5/4.40 82.2/3.91 61.5/3.75-3.86
bDFruf 63.6/3.76-3.76 78.1/4.48 75.5/4.14 82.3/3.86 63.0/3.63-3.85
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 3,3 | Ac |
| 2.13 | |
| 3 | bDFruf | 3.56 3.70 |
| 5.42 | 4.40 | 3.91 | 3.75 3.86 |
| | bDFruf | 3.76 3.76 |
| 4.48 | 4.14 | 3.86 | 3.63 3.85 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 3,3 | Ac | 173.8 | 21.2 | |
| 3 | bDFruf | 61.6 | 103.8 | 78.9 | 72.5 | 82.2 | 61.5 |
| | bDFruf | 63.6 | 105.4 | 78.1 | 75.5 | 82.3 | 63.0 |
|
There is only one chemically distinct structure: