Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Associated disease: infection due to Campylobacter jejuni [ICD11:
XN4Q5 
]
The structure was elucidated in this paperNCBI PubMed ID: 28096310Publication DOI: 10.1093/glycob/cww136Journal NLM ID: 9104124Publisher: IRL Press at Oxford University Press
Correspondence: Michel.Gilbert

nrc-cnrc.gc.ca
Institutions: Department of Biochemistry, University of Wisconsin, Madison, WI, USA, National Research Council Canada, Human Health Therapeutics, 100 Sussex Drive, Ottawa, ON, Canada K1A 0R6
The Gram-negative bacterium Campylobacter jejuni 81116 (Penner serotype HS:6) has a class E lipooligosaccharide (LOS) biosynthesis locus containing 19 genes, which encode for 11 putative glycosyltransferases, 1 lipid A acyltransferase and 7 enzymes thought to be involved in the biosynthesis of dideoxyhexosamine (ddHexN) moieties. Although the LOS outer core structure of C. jejuni 81116 is still unknown, recent mass spectrometry analyses suggest that it contains acetylated forms of two ddHexN residues. For this investigation, five of the genes encoding enzymes reportedly involved in the biosyntheses of these sugar residues were examined, rmlA, rmlB, wlaRA, wlaRB and wlaRG Specifically, these genes were cloned and expressed in Escherichia coli, and the corresponding enzymes were purified and tested for biochemical activity. Here we present data demonstrating that RmlA functions as a glucose-1-phosphate thymidylyltransferase and that RmlB is a thymidine diphosphate (dTDP)-glucose 4,6-dehydratase. We also show, through nuclear magnetic resonance spectroscopy and mass spectrometry analyses, that WlaRG, when utilized in coupled assays with either WlaRA or WlaRB and dTDP-4-keto-6-deoxyglucose, results in the production of either dTDP-3-amino-3,6-dideoxy-d-galactose (dTDP-Fuc3N) or dTDP-3-amino-3,6-dideoxy-d-glucose (dTDP-Qui3N), respectively. In addition, the X-ray crystallographic structures of the 3,4-ketoisomerases, WlaRA and WlaRB, were determined to 2.14 and 2.0 A resolutions, respectively. Taken together, the data reported herein demonstrate that C. jejuni 81116 utilizes five enzymes to synthesize dTDP-Fuc3N or dTDP-Qui3N and that WlaRG, an aminotransferase, can function on sugars with differing stereochemistry about their C-4' carbons. Importantly, the data reveal that C. jejuni 81116 has the ability to synthesize two isomeric ddHexN forms.
Lipooligosaccharide, Campylobacter, quinovosamine, fucosamine, ketoisomerase
Structure type: monomer
Location inside paper: p.360, fig.2, dTDP-Fuc3N
Trivial name: dTDP-D-Fucp3N, dTDP-3-amino-3,6-dideoxy-α-D-galactose, dTDP-Fucp3N, dTDP-3-amino-3,6-dideoxy-D-galactose (dTDP-Fuc3N)
Contained glycoepitopes: IEDB_138113,IEDB_196259
Methods: 13C NMR, 1H NMR, X-ray, DNA techniques, genetic methods, biochemical methods, enzyme assay, CE-MS, cloning, crystallization
Enzymes that release or process the structure: WlaRA (sugar 3,4-ketoisomerase), WlaRG (aminotransferase)
Biosynthesis and genetic data: genetic data
Synthetic data: enzymatic
3D data: 3D data
Related record ID(s): 11936, 12175
NCBI Taxonomy refs (TaxIDs): 197
Show glycosyltransferases
NMR conditions: in D2O at 298 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
5,0,0 aDFucp3N 96.1 66.4 53.6 69.3 65.7 16.5
5,0 P
5 P
xXnucdT
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
5,0,0 aDFucp3N 5.59 3.96 3.66 4.02 4.30 1.22
5,0 P
5 P
xXnucdT
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
5,0,0 aDFucp3N 96.1/5.59 66.4/3.96 53.6/3.66 69.3/4.02 65.7/4.30 16.5/1.22
5,0 P
5 P
xXnucdT
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 5,0,0 | aDFucp3N | 5.59 | 3.96 | 3.66 | 4.02 | 4.30 | 1.22 |
| 5,0 | P | |
| 5 | P | |
| | xXnucdT | |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 5,0,0 | aDFucp3N | 96.1 | 66.4 | 53.6 | 69.3 | 65.7 | 16.5 |
| 5,0 | P | |
| 5 | P | |
| | xXnucdT | |
|
There is only one chemically distinct structure: