Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Associated disease: infection due to Acinetobacter baumannii [ICD11:
XN8LS 
]
The structure was elucidated in this paperNCBI PubMed ID: 30102147Publication DOI: 10.1099/mic.0.000710Journal NLM ID: 0376646Publisher: Washington, DC: Kluwer Academic/Plenum Publishers
Correspondence: Johanna J. Kenyon <johanna.kenyon
qut.edu.au>
Institutions: N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia, State Research Center for Applied Microbiology and Biotechnology, Obolensk, Moscow Region, Russia, M. M. Shemyakin and Y. A. Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia, School of Molecular Bioscience, The University of Sydney, Sydney, Australia, Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia, Institute of Health and Biomedical Innovation, School of Biomedical Sciences, Faculty of Health, Queensland University of Technology, Brisbane, Australia, School of Life and Environmental Sciences, The University of Sydney, Sydney, Australia
TThe KL53 capsular polysaccharide (CPS) gene cluster of Acinetobacter baumannii D23 was sequenced, and includes a single gtr gene encoding the glycosyltransferase Gtr2, and the itrA1 gene for ItrA1 that is known to initiate CPS biosynthesis with d-QuiNAc4NAc. The K53 CPS was isolated and studied by one- and two-dimensional 1H and 13C nuclear magnetic resonance (NMR) spectroscopy before and after O-deacetylation. The disaccharide K unit of the CPS was established as →3)-α-d-GalpNAcA4Ac-(1→3)-β-d-QuipNAc4NAc-(1→, where GalNAcA and QuiNAc4NAc indicate 2-acetamido-2-deoxygalacturonic acid and 2,4-diacetamido-2,4,6-trideoxyglucose, respectively. This established the linkage formed by Gtr2. The degree of 4-O-acetylation of d-GalNAcA by Atr18, encoded at the KL53 locus, is ~55 %.
Acinetobacter baumannii, capsular polysaccharide, 2, 4-diacetamido-2, 4, 6-trideoxy-D-glucose, 2-acetamido-2-deoxy-D-galacturonic acid, K locus, KL53
Structure type: polymer chemical repeating unit
Location inside paper: abstract, p.1291, fig.2, table S1, CPS
Trivial name: KL53 CPS
Compound class: CPS
Methods: 13C NMR, 1H NMR, NMR-2D, DNA sequencing, sugar analysis, ESI-MS, acid hydrolysis, GLC, de-O-acetylation, GPC, bioinformatic analysis
Biosynthesis and genetic data: WzyK53 (ItrA1), Gtr2, Atr18
Related record ID(s): 12785, 12786, 12787
NCBI Taxonomy refs (TaxIDs): 470Reference(s) to other database(s): GTC:G87505IP
Show glycosyltransferases
NMR conditions: in D2O at 333 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3,2 Ac 174.9-175.3 23.4-23.8
3,4 55%Ac 172.9 21.4
3 aDGalpNA 98.4 49.3 73.7 72.4 70.8 173.7
2 Ac 174.9-175.3 23.4-23.8
4 Ac 174.9-175.3 23.4-23.8
bDQuipN4N 101.9 56.2 76.7 58.2 72.2 17.8
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3,2 Ac - 1.94-2.03
3,4 55%Ac - 2.11
3 aDGalpNA 5.19 4.29 3.96 5.69 4.35 -
2 Ac - 1.94-2.03
4 Ac - 1.94-2.03
bDQuipN4N 4.51 3.66 3.78 3.76 3.45 1.16
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3,2 Ac 23.4-23.8/1.94-2.03
3,4 55%Ac 21.4/2.11
3 aDGalpNA 98.4/5.19 49.3/4.29 73.7/3.96 72.4/5.69 70.8/4.35
2 Ac 23.4-23.8/1.94-2.03
4 Ac 23.4-23.8/1.94-2.03
bDQuipN4N 101.9/4.51 56.2/3.66 76.7/3.78 58.2/3.76 72.2/3.45 17.8/1.16
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
|---|
| 3,2 | Ac |
| 1.94
2.03 | |
| 3,4 | 55%Ac |
| 2.11 | |
| 3 | aDGalpNA | 5.19 | 4.29 | 3.96 | 5.69 | 4.35 |
|
| 2 | Ac |
| 1.94
2.03 | |
| 4 | Ac |
| 1.94
2.03 | |
| | bDQuipN4N | 4.51 | 3.66 | 3.78 | 3.76 | 3.45 | 1.16 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
|---|
| 3,2 | Ac | 174.9
175.3 | 23.4
23.8 | |
| 3,4 | 55%Ac | 172.9 | 21.4 | |
| 3 | aDGalpNA | 98.4 | 49.3 | 73.7 | 72.4 | 70.8 | 173.7 |
| 2 | Ac | 174.9
175.3 | 23.4
23.8 | |
| 4 | Ac | 174.9
175.3 | 23.4
23.8 | |
| | bDQuipN4N | 101.9 | 56.2 | 76.7 | 58.2 | 72.2 | 17.8 |
|
There is only one chemically distinct structure:
Found 
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