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1. (Article ID: 198)
Vinogradov EV, Petersen BO, Thomas-Oates JE, Duus JO, Brade H, Holst O
Characterization of a novel branched tetrasaccharide of 3-deoxy-D-manno-oct-2-ulopyranosonic acid. The structure of the carbohydrate backbone of the lipopolyasccharide from Acinetobacter baumannii strain NCTC 10303 (ATCC 17904)
Journal of Biological Chemistry 273(43) (1998)
28122-28131
For the first time, the tetrasaccharide Kdo a2→5 Kdo a2→5 (Kdo a2→4)Kdo (Kdo is 3-deoxy-Dmanno-oct-2-ulopyranosonic acid) has been identified in a bacterial lipopolysaccharide (LPS), i.e. in the core region of LPS from Acinetobacter baumannii NCTC 10303. The LPS was analyzed using compositional analysis, mass spectrometry, and NMR spectroscopy. The disaccharide DGlcpN b1→6 DGlcpN, phosphorylated at O-1 and O-4', was identified as the carbohydrate backbone of the lipid A. The Kdo tetrasaccharide is attached to O-6' of this disaccharide and is further substituted by short L-rhamnoglycans of varying length and by the disaccharide DGlcpNAc a1→4 DGlcpNA (GlcpNA, 2-amino-2-deoxy-glucopyranosuronic acid). The core region is not substituted by phosphate residues and represents a novel core type of bacterial LPS. The complete carbohydrate backbone of the LPS is shown in Structure I as follows: [see formula in text] where Rha is rhamnose. Except were indicated, monosaccharides possess the D-configuration. Sugars marked with an asterisk are present in non-stoichiometric amounts.
LPS, structure, core, acid, Acinetobacter, Acinetobacter baumannii, 3-deoxy-D-manno-oct-2-ulopyranosonic
NCBI PubMed ID: 9774431Publication DOI: 10.1074/jbc.273.43.28122Journal NLM ID: 2985121RPublisher: Baltimore, MD: American Society for Biochemistry and Molecular Biology
Correspondence: oholst

fz-borstel.de
Institutions: Division of Medical and Biochemical Microbiology, Research Center Borstel, Center for Medicine and Biosciences, D-23845 Borstel, Germany, Department of Chemistry, Carlsberg Laboratory, DK-2500 Valby, Denmark, Department of Mass Spectrometry, Bijvoet Center for Biomolecular Research, Utrecht University,NL-3584 CA Utrecht, The Netherlands
Methods: NMR-2D, NMR, MS, composition analysis
The publication contains the following compound(s):
- Compound ID: 747
|
a-Kdop-(2-4)-+
|
a-D-GlcpNAc-(1-4)-a-D-GlcpNA-(1-4)-+ | P-4)-+
| | |
?%a-L-Rhap-(1-3)-?%a-L-Rhap-(1-3)-a-L-Rhap-(1-3)-a-L-Rhap-(1-8)-a-Kdop-(2-5)-a-Kdop-(2-5)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P |
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Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GlycomeDB:
26679
- Compound ID: 748
Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 749
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G51264CO
- Compound ID: 750
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G03527GN
- Compound ID: 751
Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 752
|
P-4)-+
|
a-Kdop-(2-4)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P |
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Structure type: oligomer
Trivial name: core-lipid A carbohydrate backbone
Compound class: core oligosaccharide, LPS
Reference(s) to other database(s): GlycomeDB:
8179, CCSD:
46733, CBank-STR:13726
- Compound ID: 753
|
a-Kdop-(2-4)-+ P-4)-+
| |
b-L-4dthrHexp4enA-(1-4)-a-Kdop-(2-5)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P |
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Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GlycomeDB:
36791
- Compound ID: 754
|
a-Kdop-(2-4)-+ P-4)-+
| |
a-D-GlcpN-(1-4)-a-D-GlcpNA-(1-4)-a-Kdop-(2-5)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GlycomeDB:
26763
- Compound ID: 755
|
R-3HOLau-(1-2)-+
|
a-Kdop-(2-4)-+ |
| |
a-D-GlcpN-(1-4)-a-D-GlcpNA-(1-4)-+ | |
| | |
a-L-Rhap-(1-3)-a-L-Rhap-(1-3)-a-L-Rhap-(1-8)-a-Kdop-(2-5)-a-Kdop-(2-5)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P
|
P-4)-+ |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
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