Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Associated disease: infection due to Helicobacter pylori [ICD11:
XN3DY 
];
infection due to Campylobacter jejuni [ICD11:
XN4Q5 
]
The structure was elucidated in this paperNCBI PubMed ID: 16286454Publication DOI: 10.1074/jbc.M511021200Journal NLM ID: 2985121RPublisher: Baltimore, MD: American Society for Biochemistry and Molecular Biology
Correspondence: susan.logan

nrc-cnrc.gc.ca
Institutions: Institute for Biological Sciences, National Research Council, Ottawa, Ontario, Canada
Helicobacter pylori and Campylobacter jejuni have been shown to modify their flagellins with pseudaminic acid (Pse), via O-linkage, while C. jejuni also possesses a general protein glycosylation pathway (Pgl) responsible for the N-linked modification of at least 30 proteins with a heptasaccharide containing 2,4-diacetamido-2,4,6-trideoxy-α-D-glucopyranose, a derivative of bacillosamine. To further define the Pse and bacillosamine biosynthetic pathways, we have undertaken functional characterization of UDP-α-D-GlcNAc modifying dehydratase/aminotransferase pairs, in particular the H. pylori and C. jejuni flagellar pairs HP0840/HP0366 and Cj1293/Cj1294, as well as the C. jejuni Pgl pair Cj1120c/Cj1121c using His(6)-tagged purified derivatives. The metabolites produced by these enzymes were identified using NMR spectroscopy at 500 and/or 600 MHz with a cryogenically cooled probe for optimal sensitivity. The metabolites of Cj1293 (PseB) and HP0840 (FlaA1) were found to be labile and could only be characterized by NMR analysis directly in aqueous reaction buffer. The Cj1293 and HP0840 enzymes exhibited C6 dehydratase as well as a newly identified C5 epimerase activity that resulted in the production of both UDP-2-acetamido-2,6-dideoxy-β-L-arabino-4-hexulose and UDP-2-acetamido-2,6-dideoxy-α-D-xylo-4-hexulose. In contrast, the Pgl dehydratase Cj1120c (PglF) was found to possess only C6 dehydratase activity generating UDP-2-acetamido-2,6-dideoxy-α-D-xylo-4-hexulose. Substrate-specificity studies demonstrated that the flagellar aminotransferases HP0366 and Cj1294 utilize only UDP-2-acetamido-2,6-dideoxy-β-L-arabino-4-hexulose as substrate producing UDP-4-amino-4,6-dideoxy-β-L-AltNAc, a precursor in the Pse biosynthetic pathway. In contrast, the Pgl aminotransferase Cj1121c (PglE) utilizes only UDP-2-acetamido-2,6-dideoxy-α-D-xylo-4-hexulose producing UDP-4-amino-4,6-dideoxy-α-D-GlcNAc (UDP-2-acetamido-4-amino-2,4,6-trideoxy-α-D-glucopyranose), a precursor used in the production of the Pgl glycan component 2,4-diacetamido-2,4,6-trideoxy-α-D-glucopyranose.
Campylobacter, NMR spectroscopy, pseudaminic acid, Helicobacter pylori, Substrate Specificity, glycosylation, bacillosamine, Flagellin
Structure type: monomer
Location inside paper: p.731, fig. 8, I
Trivial name: UDP-α-D-GlcNAc, UDP-N-acetyl-α-D-glucosamine, UDP-2-acetamido-2-deoxy-α-D-glucopyranose, UDP-2-acetamido-α-D-glucopyranose, UPD-2-acetamido-α-D-glucopyranose, UDP-GlcNAc
Compound class: nucleoside diphosphate sugar
Contained glycoepitopes: IEDB_137340,IEDB_141807,IEDB_150077,IEDB_151531
Methods: NMR-2D, NMR, SDS-PAGE, genetic methods, biochemical methods, capillary electrophoresis (CE)
Biosynthesis and genetic data: genetic data, biochemical data
Comments, role: first substrate for biosynthesis of pseudaminic acid and bacillosamine
Related record ID(s): 20012, 20061, 20533, 20534, 20535, 20536, 21416, 21566, 22700, 22756, 22960, 23084, 23157, 23190, 23645, 23820, 23880, 23933, 24069, 25543
NCBI Taxonomy refs (TaxIDs): 210,
197
Show glycosyltransferases
NMR conditions: in 90%H2O / 10%D2O at 298 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6 C7 C8 C9
5,0,0,2 Ac ? 22.9
5,0,0 aDGlcpN 95.1 54.5 71.7 70.3 73.8 61.2
5,0 P
5 P
xXnucU 89.2 74.6 70.5 83.9 65.6 167.2 152.6 103.4 142.4
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6 H7 H8 H9
5,0,0,2 Ac - 2.08
5,0,0 aDGlcpN 5.51 3.99 3.81 3.55 3.92 3.82-3.86
5,0 P
5 P
xXnucU 5.97 4.37 4.36 4.28 4.18-4.23 - - 5.97 7.95
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6 C7/H7 C8/H8 C9/H9
5,0,0,2 Ac 22.9/2.08
5,0,0 aDGlcpN 95.1/5.51 54.5/3.99 71.7/3.81 70.3/3.55 73.8/3.92 61.2/3.82-3.86
5,0 P
5 P
xXnucU 89.2/5.97 74.6/4.37 70.5/4.36 83.9/4.28 65.6/4.18-4.23 103.4/5.97 142.4/7.95
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 | H7 | H8 | H9 |
| 5,0,0,2 | Ac |
| 2.08 | |
| 5,0,0 | aDGlcpN | 5.51 | 3.99 | 3.81 | 3.55 | 3.92 | 3.82 3.86 | |
| 5,0 | P | |
| 5 | P | |
| | xXnucU | 5.97 | 4.37 | 4.36 | 4.28 | 4.18 4.23 |
|
| 5.97 | 7.95 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 | C7 | C8 | C9 |
| 5,0,0,2 | Ac | ? | 22.9 | |
| 5,0,0 | aDGlcpN | 95.1 | 54.5 | 71.7 | 70.3 | 73.8 | 61.2 | |
| 5,0 | P | |
| 5 | P | |
| | xXnucU | 89.2 | 74.6 | 70.5 | 83.9 | 65.6 | 167.2 | 152.6 | 103.4 | 142.4 |
|
 The spectrum also has 1 signal at unknown position (not plotted). |
There is only one chemically distinct structure: