Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Associated disease: infection due to Escherichia coli [ICD11:
XN6P4 
]
The structure was elucidated in this paperNCBI PubMed ID: 18487334Publication DOI: 10.1128/JB.00160-08Journal NLM ID: 2985120RPublisher: American Society for Microbiology
Correspondence: fenglu63

nankai.edu.cn
Institutions: Department of Medicine, Department of Biochemistry, Queen's University, Kingston Ontario K7L 3N6, Canada, TEDA School of Biological Sciences and Biotechnology, Nankai University, Hongda Street, TEDA, Tianjin 300457, P.R.China, Tianjin Key Laboratory of Microbial Functional Genomics, P. R. China, Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, P. R. China, Department of Chemistry, Queen's University, Kingston Ontario K7L 3N6, Canada
The O antigens of outer membrane-bound lipopolysaccharides (LPS) in Gram-negative bacteria are oligosaccharides consisting of repeating units with various structures and antigenicities. The O56 and O152 antigens of Escherichia coli both contain a Glc-β 1-3-GlcNAc linkage within the repeating unit. We have cloned and identified the genes (wfaP in O56 and wfgD in O152) within the two O antigen gene clusters that encode glucosyltransferases involved in the synthesis of this linkage. A synthetic substrate analog of the natural acceptor substrate undecaprenol-pyrophosphate-lipid (GlcNAc-PP-PhU) was used as an acceptor and UDP-Glc as a donor substrate to demonstrate that both wfgD and wfaP encode glucosyltransferases. Enzyme products from both glucosyltransferases were isolated by HPLC and analyzed by NMR. The spectra showed the expected Glc-β 1-3-GlcNAc linkage in the products, confirming that both WfaP and WfgD are UDP-Glc: GlcNAc-pyrophosphate-lipid β-1,3-glucosyltransferases. Both WfaP and WfgD have a DxD sequence which is proposed to interact with phosphate groups of the nucleotide donor through the coordination of a metal cation, and a short hydrophobic sequence at the C terminus that may help to associate the enzymes with the inner membrane. We showed that the enzymes have similar properties and substrate recognition. They both require divalent cation (Mn(2+) or Mg(2+)) for activity, are deactivated by detergents, have a broad pH optimum, and require the pyrophosphate-sugar linkage in the acceptor substrate for full activity. Substrates lacking phosphate or pyrophosphate linked to GlcNAc were inactive. The length of the aliphatic chain of acceptor substrates also contributes to the activity.
O-antigen, gene cluster, Glucosyltransferases, enzymatic syntheses, Escherichia coli O56, Escherichia coli O152
Structure type: oligomer
Location inside paper: p.4923, p.4927, table 2
Aglycon: (CH2)11OPh
Trivial name: disaccharide a-pyrophosphatephenylundecyl
Contained glycoepitopes: IEDB_135813,IEDB_137340,IEDB_141807,IEDB_142488,IEDB_146664,IEDB_150077,IEDB_151531,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, genetic methods, biochemical methods, HPLC
Enzymes that release or process the structure: WfaP, wfgD (b1,3-glucosyltransferase)
Biosynthesis and genetic data: genetic data
Synthetic data: enzymatic
Comments, role: NMR data for WfaP product.
Related record ID(s): 22619, 22850, 22852
NCBI Taxonomy refs (TaxIDs): 562Reference(s) to other database(s): GlycomeDB:
37232
Show glycosyltransferases
NMR conditions: in D2O at 293 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
0,0,3 bDGlcp 104.7 74.5 77.5 71.0 77.8 62.1
0,0,2 Ac
0,0 ?DGlcpN 95.8 53.8 82.9 70.4 74.8 62.2
0 P
P
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
0,0,3 bDGlcp 4.41 3.18 3.37 3.33 3.33 3.67-3.89
0,0,2 Ac
0,0 ?DGlcpN 5.54 4.14 3.86 3.42 4.00 3.66
0 P
P
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
0,0,3 bDGlcp 104.7/4.41 74.5/3.18 77.5/3.37 71.0/3.33 77.8/3.33 62.1/3.67-3.89
0,0,2 Ac
0,0 ?DGlcpN 95.8/5.54 53.8/4.14 82.9/3.86 70.4/3.42 74.8/4.00 62.2/3.66
0 P
P
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 0,0,3 | bDGlcp | 4.41 | 3.18 | 3.37 | 3.33 | 3.33 | 3.67 3.89 |
| 0,0,2 | Ac | |
| 0,0 | ?DGlcpN | 5.54 | 4.14 | 3.86 | 3.42 | 4.00 | 3.66 |
| 0 | P | |
| | P | |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 0,0,3 | bDGlcp | 104.7 | 74.5 | 77.5 | 71.0 | 77.8 | 62.1 |
| 0,0,2 | Ac | |
| 0,0 | ?DGlcpN | 95.8 | 53.8 | 82.9 | 70.4 | 74.8 | 62.2 |
| 0 | P | |
| | P | |
|
There is only one chemically distinct structure: