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Altman E, Wang Z, Aaron SD, Liu X, Vandemheen KL, Ferris W, Giesbrecht T, Li J
Epidemiological investigation and glycotyping of clinical Pseudomonas aeruginosa isolates from patients with cystic fibrosis by mass spectrometry: Association with multiple drug resistance
Journal of Microbiological Methods 76(2) (2009)
204-208
|
-3)-a-L-Rhap-(1-4)-a-D-GalpNAcA3(70%)Ac6NH2-(1-4)-a-D-GalpNFoA-(1-3)-a-D-QuipNAc-(1- |
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Pseudomonas aeruginosa ATCC 27853 O6a
(Ancestor NCBI TaxID 287,
species name lookup)
Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Host organism: Homo sapiens
Associated disease: bronchitis [ICD11:
CA20 
, ICD11:
CA20.Z ];
infection due to Pseudomonas aeruginosa [ICD11:
XN5L6 ]
NCBI PubMed ID: 19000720Journal NLM ID: 8306883Correspondence: Eleonora.altman
nrc-cnrc.gc.ca (E. Altman)
Institutions: Institute for Biological Sciences, National Research Council of Canada, 100 Sussex Drive, Ottawa, Ontario, Canada K1A 0R6
The aim of the present investigation was to develop a novel approach for rapid identification and differentiation of Pseudomonas aeruginosa clones from Canadian cystic fibrosis patients by capillary electrophoresis-mass spectrometry. We screened P. aeruginosa isolates for lipopolysaccharide structure and presence/absence of alginate and correlated these findings with antibiotic resistance patterns.
Lipopolysaccharide, structure, Pseudomonas aeruginosa, mass spectrometry, cystic fibrosis, drug resistance
Structure type: polymer chemical repeating unit
Location inside paper: p. 205, fig.2A
Compound class: O-polysaccharide, O-antigen
Contained glycoepitopes: IEDB_136105,IEDB_225177,IEDB_885823
Methods: serological methods, CE-MS
Biological activity: serological data
Related record ID(s): 23958, 23959
NCBI Taxonomy refs (TaxIDs): 287Reference(s) to other database(s): GTC:G48345FF
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There is only one chemically distinct structure:
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Altman E, Wang Z, Aaron SD, Liu X, Vandemheen KL, Ferris W, Giesbrecht T, Li J
Epidemiological investigation and glycotyping of clinical Pseudomonas aeruginosa isolates from patients with cystic fibrosis by mass spectrometry: Association with multiple drug resistance
Journal of Microbiological Methods 76(2) (2009)
204-208
|
-4)-a-D-GalpNAcA6NH2-(1-4)-a-D-GalpNFoA-(1-3)-a-D-QuipNAc-(1-3)-a-L-Rhap-(1- |
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Pseudomonas aeruginosa O6a,6c
(Ancestor NCBI TaxID 287,
species name lookup)
Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Host organism: Homo sapiens
Associated disease: bronchitis [ICD11:
CA20 , ICD11:
CA20.Z ];
infection due to Pseudomonas aeruginosa [ICD11:
XN5L6 ]
NCBI PubMed ID: 19000720Journal NLM ID: 8306883Correspondence: Eleonora.altman
nrc-cnrc.gc.ca (E. Altman)
Institutions: Institute for Biological Sciences, National Research Council of Canada, 100 Sussex Drive, Ottawa, Ontario, Canada K1A 0R6
The aim of the present investigation was to develop a novel approach for rapid identification and differentiation of Pseudomonas aeruginosa clones from Canadian cystic fibrosis patients by capillary electrophoresis-mass spectrometry. We screened P. aeruginosa isolates for lipopolysaccharide structure and presence/absence of alginate and correlated these findings with antibiotic resistance patterns.
Lipopolysaccharide, structure, Pseudomonas aeruginosa, mass spectrometry, cystic fibrosis, drug resistance
Structure type: polymer chemical repeating unit
Location inside paper: p. 205, fig.2B
Compound class: O-polysaccharide, O-antigen
Contained glycoepitopes: IEDB_136105,IEDB_225177,IEDB_885823
Methods: serological methods, CE-MS
Biological activity: serological data
Comments, role: Pseudomonas aeruginosa clonal strain A; published polymerization frame was shifted for conformity with other records.
Related record ID(s): 23646, 23959, 24047
NCBI Taxonomy refs (TaxIDs): 287Reference(s) to other database(s): GTC:G61195BH, GlycomeDB:
33497
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There is only one chemically distinct structure:
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Altman E, Wang Z, Aaron SD, Liu X, Vandemheen KL, Ferris W, Giesbrecht T, Li J
Epidemiological investigation and glycotyping of clinical Pseudomonas aeruginosa isolates from patients with cystic fibrosis by mass spectrometry: Association with multiple drug resistance
Journal of Microbiological Methods 76(2) (2009)
204-208
|
a-L-Rhap-(1-6)-a-D-Glcp-(1-4)-+ P-6)-+ P-2)-+ a-Kdop-(2-4)-+
| | | |
a-D-Glcp-(1-6)-b-D-Glcp-(1-3)-a-D-GalpN?(%)Ac-(1-3)-L-gro-a-D-manHepp7Cm-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdop-(2--/lipid A/
| |
Ala-(1-2)-+ P-4)-+ |
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Pseudomonas aeruginosa
(NCBI TaxID 287,
species name lookup)
Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Host organism: Homo sapiens
Associated disease: bronchitis [ICD11:
CA20 , ICD11:
CA20.Z ];
infection due to Pseudomonas aeruginosa [ICD11:
XN5L6 ]
NCBI PubMed ID: 19000720Journal NLM ID: 8306883Correspondence: Eleonora.altman
nrc-cnrc.gc.ca (E. Altman)
Institutions: Institute for Biological Sciences, National Research Council of Canada, 100 Sussex Drive, Ottawa, Ontario, Canada K1A 0R6
The aim of the present investigation was to develop a novel approach for rapid identification and differentiation of Pseudomonas aeruginosa clones from Canadian cystic fibrosis patients by capillary electrophoresis-mass spectrometry. We screened P. aeruginosa isolates for lipopolysaccharide structure and presence/absence of alginate and correlated these findings with antibiotic resistance patterns.
Lipopolysaccharide, structure, Pseudomonas aeruginosa, mass spectrometry, cystic fibrosis, drug resistance
Structure type: oligomer
Location inside paper: p.205, fig.2C
Aglycon: lipid A
Compound class: core oligosaccharide
Contained glycoepitopes: IEDB_130650,IEDB_130659,IEDB_1330403,IEDB_136105,IEDB_137473,IEDB_140088,IEDB_142488,IEDB_144144,IEDB_144998,IEDB_146664,IEDB_2189047,IEDB_225177,IEDB_885823,IEDB_983931,SB_192
Methods: serological methods, CE-MS
Biological activity: serological data
Comments, role: Pseudomonas aeruginosa strains belonging to clones B and unique nonA nonB
Related record ID(s): 23646, 23958
NCBI Taxonomy refs (TaxIDs): 287Reference(s) to other database(s): GlycomeDB:
37337
Show glycosyltransferases
There is only one chemically distinct structure:
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