Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Host organism: (animal); Homo sapiens
Associated disease: infectious gastroenteritis [ICD11:
1A40.Z 
];
diarrhea [ICD11:
ME05.1 
, ICD11:
SA55 
];
urinary tract infections (UTI) [ICD11:
GC08 
];
septicemia [ICD11:
MA15.Y 
];
meningitis [ICD11:
1D01 
];
infection due to Escherichia coli [ICD11:
XN6P4 
]
The structure was elucidated in this paperNCBI PubMed ID: 19423083Publication DOI: 10.1016/j.carres.2009.03.023Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: G. Widmalm <gw

organ.su.se>
Institutions: Department of Organic Chemistry, Arrhenius Laboratory, Stockholm University, Stockholm, Sweden
The structure of the O-antigen polysaccharide (PS) from Escherichia coli O74 has been determined. Component analysis, together with (1)H and (13)C NMR spectroscopy as well as (1)H,(15)N-HSQC experiments were employed to elucidate the structure. Inter-residue correlations were determined by (1)H,(1)H-NOESY and (1)H,(13)C-heteronuclear multiple-bond correlation experiments. The PS is composed of tetrasaccharide repeating units with the following structure: Cross-peaks of low intensity from an α-linked N-acetylglucosamine residue were present in the NMR spectra, and spectral analysis indicates that they originate from the penultimate residue in the polysaccharide. Consequently, the biological repeating unit has a 3-substituted N-acetyl-d-glucosamine residue at its reducing end. The (1)H, (13)C and (15)N NMR chemical shifts of the α- and β-anomeric forms of d-Fucp3NAc are also reported. The repeating unit of the E. coli O74 O-antigen is identical to that of the capsular polysaccharide from E. coli K45.
Lipopolysaccharide, NMR, Escherichia coli, capsular polysaccharide, biological repeating unit
Structure type: polymer biological repeating unit
Location inside paper: abstract, p.1593
Compound class: O-polysaccharide, O-antigen
Contained glycoepitopes: IEDB_135813,IEDB_137340,IEDB_141807,IEDB_151531
Methods: 13C NMR, 1H NMR, sugar analysis, acid hydrolysis, GLC, chemical synthesis, NMR-1D, 15N NMR, acetylation
Related record ID(s): 31172, 31173
NCBI Taxonomy refs (TaxIDs): 2067425Reference(s) to other database(s): GTC:G66460HL, GlycomeDB:
6463
Show glycosyltransferases
NMR conditions: in D2O at 303 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3,4,2 Ac 175.5 23.2
3,4,3,3 Ac 175.1 22.8
3,4,3 bDFucp3N 104.6 68.8 55.6 70.5 72.6 16.3
3,4 aDGlcpN 100.1 53.1 81.3 68.9 71.4 69.1
3 bDGalpA 104.3 70.9 72.8 79.9 75.2 174.0
2 Ac 175.5 23.2
bDGlcpN 102.4 55.6 84.0 69.7 76.4 61.6
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3,4,2 Ac - 2.04
3,4,3,3 Ac - 2.05
3,4,3 bDFucp3N 4.46 3.52 3.92 3.73 3.89 1.25
3,4 aDGlcpN 4.91 4.03 3.86 3.58 4.28 3.84-4.10
3 bDGalpA 4.49 3.59 3.79 4.29 4.09 -
2 Ac - 2.07
bDGlcpN 4.59 3.90 3.83 3.61 3.52 3.83-3.97
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3,4,2 Ac 23.2/2.04
3,4,3,3 Ac 22.8/2.05
3,4,3 bDFucp3N 104.6/4.46 68.8/3.52 55.6/3.92 70.5/3.73 72.6/3.89 16.3/1.25
3,4 aDGlcpN 100.1/4.91 53.1/4.03 81.3/3.86 68.9/3.58 71.4/4.28 69.1/3.84-4.10
3 bDGalpA 104.3/4.49 70.9/3.59 72.8/3.79 79.9/4.29 75.2/4.09
2 Ac 23.2/2.07
bDGlcpN 102.4/4.59 55.6/3.90 84.0/3.83 69.7/3.61 76.4/3.52 61.6/3.83-3.97
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 3,4,2 | Ac |
| 2.04 | |
| 3,4,3,3 | Ac |
| 2.05 | |
| 3,4,3 | bDFucp3N | 4.46 | 3.52 | 3.92 | 3.73 | 3.89 | 1.25 |
| 3,4 | aDGlcpN | 4.91 | 4.03 | 3.86 | 3.58 | 4.28 | 3.84 4.10 |
| 3 | bDGalpA | 4.49 | 3.59 | 3.79 | 4.29 | 4.09 |
|
| 2 | Ac |
| 2.07 | |
| | bDGlcpN | 4.59 | 3.90 | 3.83 | 3.61 | 3.52 | 3.83 3.97 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 3,4,2 | Ac | 175.5 | 23.2 | |
| 3,4,3,3 | Ac | 175.1 | 22.8 | |
| 3,4,3 | bDFucp3N | 104.6 | 68.8 | 55.6 | 70.5 | 72.6 | 16.3 |
| 3,4 | aDGlcpN | 100.1 | 53.1 | 81.3 | 68.9 | 71.4 | 69.1 |
| 3 | bDGalpA | 104.3 | 70.9 | 72.8 | 79.9 | 75.2 | 174.0 |
| 2 | Ac | 175.5 | 23.2 | |
| | bDGlcpN | 102.4 | 55.6 | 84.0 | 69.7 | 76.4 | 61.6 |
|
There is only one chemically distinct structure: