Taxonomic group: bacteria / Firmicutes
(Phylum: Firmicutes)
Associated disease: meningitis [ICD11:
1D01 
];
septicemia [ICD11:
MA15.Y 
];
inflammatory arthropathies [ICD11:
FA2Z 
];
infection due to Streptococcus suis [ICD11:
XN5SE 
]
The structure was elucidated in this paperNCBI PubMed ID: 20555393Publication DOI: 10.1139/O09-170Journal NLM ID: 8606068Publisher: Ottawa: National Research Council of Canada
Correspondence: marie-rose.vancalsteren

agr.gc.ca
Institutions: Centre de recherche et de developpement sur les aliments, Agriculture et Agroalimentaire Canada, Saint-Hyacinthe, QC J2S 8E3, Canada, Groupe de recherche sur les maladies infectieuses du porc (GREMIP) and Centre de recherche en infectiologie porcine (CRIP), Faculté de médecine vétérinaire, Université de Montréal, Saint-Hyacinthe, QC J2S 2M2, Canada
The capsular polysaccharide (CPS) of Streptococcus suis serotype 2 was isolated, purified, chemically modified, and characterized. Sugar and absolute configuration analyses of the CPS gave the following composition: D-Gal, 3; D-Glc, 1; D-GlcNAc, 1; D-Neu5Ac, 1; L-Rha, 1. Sialic acid was found to be terminal, and the CPS was quantitatively desialylated by mild acid hydrolysis. The CPS was also submitted to periodate oxidation followed by borohydride reduction and Smith degradation. Sugar and methylation analysis, 1H and 13C nuclear magnetic resonance, and mass spectrometry of the native CPS or of its specifically modified products allowed to determine the repeating unit sequence: [4)[Neu5Ac(α2-6)Gal(β1-4)GlcNAc(β1-3)]Gal(β1-4)[Gal(α1-3) ]Rha(β1-4)Glc(β1-]n. The backbone sequence was found to be identical to that of Streptococcus agalactiae or group B Streptococcus (GBS) type VIII and Streptococcus pneumoniae type 23F. The S. suis CPS shares the sequence Neu5Ac-Gal-GlcNAc-Gal in common with GBS types Ia, Ib, II, III, and IV CPSs but differs from them by the presence of rhamnose and the fact that sialic acid is 2,6- rather than 2,3-linked to the following Gal. A correlation between the S. suis CPS sequence and genes of the serotype 2 cps locus encoding putative enzymes responsible for the biosynthesis of the repeating unit was tentatively established.
chemical modification, nuclear magnetic resonance (NMR), mass spectrometry (MS), repeating unit sequence
Structure type: polymer chemical repeating unit
Location inside paper: p.519
Compound class: CPS
Contained glycoepitopes: IEDB_130646,IEDB_130697,IEDB_135813,IEDB_136044,IEDB_136906,IEDB_137340,IEDB_137472,IEDB_137776,IEDB_140108,IEDB_140122,IEDB_141794,IEDB_141807,IEDB_142488,IEDB_146664,IEDB_146668,IEDB_151528,IEDB_151531,IEDB_190606,IEDB_225177,IEDB_548870,IEDB_885823,IEDB_983931,SB_165,SB_166,SB_173,SB_187,SB_192,SB_195,SB_30,SB_7,SB_88
Methods: 13C NMR, 1H NMR, NMR-2D, sugar analysis, ESI-MS, mild acid hydrolysis, GC, Smith degradation, NMR-1D, methanolysis, SEC-MALS
Comments, role: desialylated polysaccharide; the published 13C NMR spectrum in DSS was shifted 1.6 ppm upfield by CSDB staff to accord to a TMS reference
Related record ID(s): 25452, 25871
NCBI Taxonomy refs (TaxIDs): 1307Reference(s) to other database(s): GTC:G61573UL, GlycomeDB:
37915
Show glycosyltransferases
NMR conditions: in D2O / DSS at 348 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
4,4,3,4 bDGalp 104.06 72.15 73.83 69.74 76.43 62.05
4,4,3,2 Ac 175.60 23.49
4,4,3 bDGlcpN 103.82 56.72 73.45 80.18 75.88 61.66
4,4 bDGalp 104.00 71.70 83.42 76.43 75.31 62.04
4,3 aDGalp 94.41 69.37 70.71 70.58 72.25 62.29
4 bLRhap 101.40 66.92 76.57 77.05 72.25 18.31
bDGlcp 103.18 74.79 76.85 78.44 75.59 62.29
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
4,4,3,4 bDGalp 4.47 3.55 3.65 3.94 3.72 3.7-3.8
4,4,3,2 Ac - 2.03
4,4,3 bDGlcpN 4.78 3.76 3.75 3.69 3.60 3.82-3.98
4,4 bDGalp 4.66 3.66 3.78 4.34 3.67 3.7-3.8
4,3 aDGalp 5.25 3.90 3.95 3.98 4.19 3.74
4 bLRhap 4.86 4.38 3.92 3.87 3.50 1.36
bDGlcp 4.86 3.32 3.67 3.61 3.49 3.93
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
4,4,3,4 bDGalp 104.06/4.47 72.15/3.55 73.83/3.65 69.74/3.94 76.43/3.72 62.05/3.7-3.8
4,4,3,2 Ac 23.49/2.03
4,4,3 bDGlcpN 103.82/4.78 56.72/3.76 73.45/3.75 80.18/3.69 75.88/3.60 61.66/3.82-3.98
4,4 bDGalp 104.00/4.66 71.70/3.66 83.42/3.78 76.43/4.34 75.31/3.67 62.04/3.7-3.8
4,3 aDGalp 94.41/5.25 69.37/3.90 70.71/3.95 70.58/3.98 72.25/4.19 62.29/3.74
4 bLRhap 101.40/4.86 66.92/4.38 76.57/3.92 77.05/3.87 72.25/3.50 18.31/1.36
bDGlcp 103.18/4.86 74.79/3.32 76.85/3.67 78.44/3.61 75.59/3.49 62.29/3.93
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 4,4,3,4 | bDGalp | 4.47 | 3.55 | 3.65 | 3.94 | 3.72 | 3.7 3.8 |
| 4,4,3,2 | Ac |
| 2.03 | |
| 4,4,3 | bDGlcpN | 4.78 | 3.76 | 3.75 | 3.69 | 3.60 | 3.82 3.98 |
| 4,4 | bDGalp | 4.66 | 3.66 | 3.78 | 4.34 | 3.67 | 3.7 3.8 |
| 4,3 | aDGalp | 5.25 | 3.90 | 3.95 | 3.98 | 4.19 | 3.74 |
| 4 | bLRhap | 4.86 | 4.38 | 3.92 | 3.87 | 3.50 | 1.36 |
| | bDGlcp | 4.86 | 3.32 | 3.67 | 3.61 | 3.49 | 3.93 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 4,4,3,4 | bDGalp | 104.06 | 72.15 | 73.83 | 69.74 | 76.43 | 62.05 |
| 4,4,3,2 | Ac | 175.60 | 23.49 | |
| 4,4,3 | bDGlcpN | 103.82 | 56.72 | 73.45 | 80.18 | 75.88 | 61.66 |
| 4,4 | bDGalp | 104.00 | 71.70 | 83.42 | 76.43 | 75.31 | 62.04 |
| 4,3 | aDGalp | 94.41 | 69.37 | 70.71 | 70.58 | 72.25 | 62.29 |
| 4 | bLRhap | 101.40 | 66.92 | 76.57 | 77.05 | 72.25 | 18.31 |
| | bDGlcp | 103.18 | 74.79 | 76.85 | 78.44 | 75.59 | 62.29 |
|
There is only one chemically distinct structure: