Taxonomic group: bacteria / Firmicutes
(Phylum: Firmicutes)
Associated disease: otitis media [ICD11:
AB0Z 
];
infection due to Streptococcus pneumoniae [ICD11:
XN3PW 
]
Publication DOI: 10.1016/S0040-4020(01)89206-1Journal NLM ID: 2984170RPublisher: Pergamon Press
Institutions: Gorlaeus Laboratories, State University, P.O. Box 9502, 2300 RA Leiden, The Netherlands
Fragments of the teichoic acid-type polysaccharide of Streptococcus pneumoniae serotype 17F, containing a D-arabinitol phosphate moiety and a spacer, were synthesized. Starting from D-lyxose or D-mannose key intermediate 1-O-allyl-2,3-di-O-benzyl-5-O-benzoyl-D-arabinitol was prepared, which was condensed with tri-O-acetyl-α-L-rhamnosyl bromide. The resulting dimer was, after removal of the allyl group, phosphorylated with either N-benzyloxycarbonyl-3-aminopropyl(2-cyanoethyl)-N,N-diethylphosphoramidite or 2-cyanoethoxy(N,N-diethylamino)chlorophosphine, the latter reagent leading to a suitable phosphitedonor. The phosphite-acceptors N-benzyloxycarbonyl-3-aminopropyl 2,3-di-O-(2-methylbenzoyl)-α-L-rhamnopyranoside and N-benzyloxycarbonyl-3-aminopropyl 2,3-di-O-benzoyl-4-O-[2,3-di-O-(2-methylbenzoyl)-α-L-rhamnopyranosyl]-6-O-(2-methylbenzoyl)-β-D-glucopyranoside were prepared by selective removal of a 4-O-dichloroacetyl group from the fully protected monomer and dimer, respectively. Condensation of the phosphite-donor with the individual acceptors led to the isolation of spacer containing trimer and tetramer fragments of the title polysaccharide. Assemble of properly protected sugar units afforded inter alia the fully protected fragment [image] which, after removal of all protecting groups, was converted into the spacer containing tetramer [image].
Structure type: fragment of a bigger structure
C
26H
50NO
21P
Location inside paper: Scheme 4, compound 48
Aglycon: 3-amino-propyl
Contained glycoepitopes: IEDB_136105,IEDB_142488,IEDB_146664,IEDB_225177,IEDB_885823,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, optical rotation measurement
Synthetic data: chemical
Comments, role: 13C NMR data for aglycone: 68.8, 27.6, 38.5. Probably erroneous (substituted) 13C NMR signal of #_bDGlcp C1 (103.1) was removed by CSDB staff.
NCBI Taxonomy refs (TaxIDs): 1313Reference(s) to other database(s): GTC:G11936MU
Show glycosyltransferases
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
4,4,0,2 aLRhap 100.4 71.4 71.0 72.8 70.1 17.6
4,4,0 xDAra-ol 66.5 75.5 70.6 71.5 63.9
4,4 P
4 aLRhap 101.4 71.3 70.9 78.4 68.9 17.7
bDGlcp ? 74.3 75.3 78.2 76.0 61.0
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
4,4,0,2 aLRhap 5.04 4.01 3.78 3.41 3.81 1.24
4,4,0 xDAra-ol 4.06 4.14 3.66 3.68 3.67-3.76
4,4 P
4 aLRhap 4.84 3.97 3.87 3.96 4.10 1.26
bDGlcp 4.43 3.24 3.56 3.52 3.50 3.73-3.83
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
4,4,0,2 aLRhap 100.4/5.04 71.4/4.01 71.0/3.78 72.8/3.41 70.1/3.81 17.6/1.24
4,4,0 xDAra-ol 66.5/4.06 75.5/4.14 70.6/3.66 71.5/3.68 63.9/3.67-3.76
4,4 P
4 aLRhap 101.4/4.84 71.3/3.97 70.9/3.87 78.4/3.96 68.9/4.10 17.7/1.26
bDGlcp ?/4.43 74.3/3.24 75.3/3.56 78.2/3.52 76.0/3.50 61.0/3.73-3.83
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 4,4,0,2 | aLRhap | 5.04 | 4.01 | 3.78 | 3.41 | 3.81 | 1.24 |
| 4,4,0 | xDAra-ol | 4.06 | 4.14 | 3.66 | 3.68 | 3.67 3.76 | |
| 4,4 | P | |
| 4 | aLRhap | 4.84 | 3.97 | 3.87 | 3.96 | 4.10 | 1.26 |
| | bDGlcp | 4.43 | 3.24 | 3.56 | 3.52 | 3.50 | 3.73 3.83 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 4,4,0,2 | aLRhap | 100.4 | 71.4 | 71.0 | 72.8 | 70.1 | 17.6 |
| 4,4,0 | xDAra-ol | 66.5 | 75.5 | 70.6 | 71.5 | 63.9 | |
| 4,4 | P | |
| 4 | aLRhap | 101.4 | 71.3 | 70.9 | 78.4 | 68.9 | 17.7 |
| | bDGlcp | ? | 74.3 | 75.3 | 78.2 | 76.0 | 61.0 |
|
 The spectrum also has 1 signal at unknown position (not plotted). |
There is only one chemically distinct structure: