Taxonomic group: bacteria / Firmicutes
(Phylum: Firmicutes)
Associated disease: infection due to Streptococcus pneumoniae [ICD11:
XN3PW 
]
The structure was elucidated in this paperNCBI PubMed ID: 2743350Publication DOI: 10.1016/0008-6215(89)80008-4Journal NLM ID: 0043535Publisher: Elsevier
Institutions: Department of Bio-Organic Chemistry, Utrecht University, Utrecht, The Netherlands
The capsular polysaccharide of Streptococcus pneumoniae serotype 6B [→2)-α-D-Galp-(1→3)-α-D-Glcp-(1→3)-α-L-Rhap-(1→4)-D-Rib-OH-(5-P→]n was depolymerised under alkaline (NaOH) and acidic (HF) conditions. The former treatment yielded, as the major component, α-2-P-Galp-(1→3)-α-Glcp-(1→3)-α-Rhap-(1→4)-5-P-Rib-OH. The latter treatment at -16 degrees gave α-Galp-(1→3)-α-Glcp-(1→3)-α-Rhap-(1→4)-Rib-OH-(5-P→2)-α-Galp-(1→3)-α-Glcp-(1→3)-α-Rhap-(1→4)-Rib-OH and at 4 degrees gave α-Galp-(1→3)-α-Glcp-(1→3)-α-Rhap-(1→4)-Rib-OH. These oligosaccharides were characterised by sugar analysis, f.a.b.-m.s., and 1H- and 13C-n.m.r. spectroscopy.
Structure type: oligomer
Location inside paper: p.268, structure 5, table II
Compound class: CPS
Contained glycoepitopes: IEDB_114703,IEDB_136105,IEDB_136906,IEDB_137472,IEDB_141794,IEDB_142488,IEDB_144998,IEDB_146664,IEDB_151528,IEDB_158539,IEDB_190606,IEDB_225177,IEDB_885823,IEDB_983931,SB_192,SB_7
Methods: 13C NMR, 1H NMR, GLC-MS, NMR-2D, sugar analysis, 31P NMR, acid hydrolysis, GLC, alkaline hydrolysis, HF treatment
Comments, role: HF treatment of the CPS
Related record ID(s): 2612, 2613, 115629, 115630
NCBI Taxonomy refs (TaxIDs): 1313Reference(s) to other database(s): GTC:G42714FX, GlycomeDB:
15851
Show glycosyltransferases
NMR conditions: in D2O at 313(C) K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
4,3,3 aDGalp 100.57 69.92 70.64 70.43 72.00 62.13
4,3 aDGlcp 96.78 71.44 79.96-80.90 71.07 72.77 61.38
4 aLRhap 101.06 68.25 76.64 71.51 70.64 17.99
xDRib-ol 63.84 72.84 73.30 79.96-80.90 60.74
1H NMR data:
missing...
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 4,3,3 | aDGalp | 100.57 | 69.92 | 70.64 | 70.43 | 72.00 | 62.13 |
| 4,3 | aDGlcp | 96.78 | 71.44 | 79.96 80.90 | 71.07 | 72.77 | 61.38 |
| 4 | aLRhap | 101.06 | 68.25 | 76.64 | 71.51 | 70.64 | 17.99 |
| | xDRib-ol | 63.84 | 72.84 | 73.30 | 79.96 80.90 | 60.74 | |
|
There is only one chemically distinct structure: