Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Host organism: Homo sapiens
Associated disease: diarrhea [ICD11:
ME05.1 
, ICD11:
SA55 
];
infection due to Escherichia coli [ICD11:
XN6P4 
]
The structure was elucidated in this paperNCBI PubMed ID: 21867992Publication DOI: 10.1016/j.carres.2011.06.022Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: G. Widmalm <gw

organ.su.se>
Institutions: Department of Organic Chemistry, Arrhenius Laboratory, Stockholm University, Stockholm, Sweden
The structure of the O-antigen polysaccharide (PS) from Escherichia coli O177 has been determined. Component analysis together with (1)H and (13)C NMR spectroscopy experiments was used to determine the structure. Inter-residue correlations were determined by (1)H,(13)C-heteronuclear multiple-bond correlation and (1)H,(1)H-NOESY experiments. PS is composed of tetrasaccharide repeating units with the following structure: →2)-α-L-Rhap-(1→3)-α-L-FucpNAc-(1→3)-α-L-FucpNAc-(1→3)-β-D-GlcpNAc-(1→. An α-L-Rhap residue is suggested to be present at the terminal part of the polysaccharide, which on average is composed of ∼20 repeating units, since the (1)H and (13)C chemical shifts of an α-linked rhamnopyranosyl group could be assigned by a combination of 2D NMR spectra. Consequently, the biological repeating unit has a 3-substituted N-acetyl-D-glucosamine residue at its reducing end. The repeating unit of the E. coli O177 O-antigen shares the →3)-α-L-FucpNAc-(1→3)-β-D-GlcpNAc-(1→ structural element with the O-antigen from E. coli O15 and this identity may then explain the reported cross-reactivity between the strains.
Lipopolysaccharide, NMR, Escherichia coli, cross-reactivity, biological repeating unit
Structure type: polymer biological repeating unit ; n=20
Location inside paper: abstract, p.2301
Compound class: O-polysaccharide
Contained glycoepitopes: IEDB_135813,IEDB_136105,IEDB_137340,IEDB_141807,IEDB_143253,IEDB_151531,IEDB_225177,IEDB_885823
Methods: 13C NMR, 1H NMR, NMR-2D, sugar analysis, acid hydrolysis, GLC, NMR-1D
NCBI Taxonomy refs (TaxIDs): 2056315Reference(s) to other database(s): GTC:G62079NM
Show glycosyltransferases
NMR conditions: in D2O at 228 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3,3,3 aLRhap 95.78 79.72 70.56 72.90 70.07 17.58
3,3,2 Ac 174.96 22.89
3,3 aLFucpN 94.19 47.92 73.17 67.53 67.84 16.36
3,2 Ac 174.85 23.07
3 aLFucpN 98.69 48.06 73.22 67.80 67.44 16.11
2 Ac 175.10 23.04
bDGlcpN 103.35 56.41 79.57 69.24 76.51 61.58
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3,3,3 aLRhap 5.08 4.00 3.72 3.31 3.56 1.30
3,3,2 Ac - 2.04
3,3 aLFucpN 5.01 4.33 3.76 4.02 3.90 1.29
3,2 Ac - 2.06
3 aLFucpN 5.03 4.37 3.91 3.99 4.35 1.20
2 Ac - 2.00
bDGlcpN 4.66 3.93 3.69 3.54 3.47 3.75-3.92
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3,3,3 aLRhap 95.78/5.08 79.72/4.00 70.56/3.72 72.90/3.31 70.07/3.56 17.58/1.30
3,3,2 Ac 22.89/2.04
3,3 aLFucpN 94.19/5.01 47.92/4.33 73.17/3.76 67.53/4.02 67.84/3.90 16.36/1.29
3,2 Ac 23.07/2.06
3 aLFucpN 98.69/5.03 48.06/4.37 73.22/3.91 67.80/3.99 67.44/4.35 16.11/1.20
2 Ac 23.04/2.00
bDGlcpN 103.35/4.66 56.41/3.93 79.57/3.69 69.24/3.54 76.51/3.47 61.58/3.75-3.92
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 3,3,3 | aLRhap | 5.08 | 4.00 | 3.72 | 3.31 | 3.56 | 1.30 |
| 3,3,2 | Ac |
| 2.04 | |
| 3,3 | aLFucpN | 5.01 | 4.33 | 3.76 | 4.02 | 3.90 | 1.29 |
| 3,2 | Ac |
| 2.06 | |
| 3 | aLFucpN | 5.03 | 4.37 | 3.91 | 3.99 | 4.35 | 1.20 |
| 2 | Ac |
| 2.00 | |
| | bDGlcpN | 4.66 | 3.93 | 3.69 | 3.54 | 3.47 | 3.75 3.92 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 3,3,3 | aLRhap | 95.78 | 79.72 | 70.56 | 72.90 | 70.07 | 17.58 |
| 3,3,2 | Ac | 174.96 | 22.89 | |
| 3,3 | aLFucpN | 94.19 | 47.92 | 73.17 | 67.53 | 67.84 | 16.36 |
| 3,2 | Ac | 174.85 | 23.07 | |
| 3 | aLFucpN | 98.69 | 48.06 | 73.22 | 67.80 | 67.44 | 16.11 |
| 2 | Ac | 175.10 | 23.04 | |
| | bDGlcpN | 103.35 | 56.41 | 79.57 | 69.24 | 76.51 | 61.58 |
|
There is only one chemically distinct structure: