Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Host organism: Homo sapiens
Associated disease: cystic fibrosis (CF) [ICD11:
CA25 
]
The structure was elucidated in this paperNCBI PubMed ID: 21636078Publication DOI: 10.1016/j.carres.2011.05.007Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: P. Cescutti <pcescutti

units.it>
Institutions: Dipartimento di Scienze della Vita, Universita di Trieste, via L. Giorgieri 1, Ed. C11, 34127 Trieste, Italy
Stenotrophomonas maltophilia is a non-fermenting Gram-negative microorganism capable of causing chronic pulmonary infection in cystic fibrosis patients and its ability to form biofilms on polystyrene and glass surfaces, as well as on cystic fibrosis-derived bronchial epithelial IB3-I cells was recently demonstrated. The latter evidence might explain the power of S. maltophilia to produce persistent lung infections, despite intensive antibiotic treatment. In addition to being important components of the extracellular biofilm matrix, polysaccharides are involved in virulence, as they contribute to bacterial survival in a hostile environment. With the aim of contributing to the elucidation of S. maltophilia virulence factors, the exopolysaccharides produced by two mucoid clinical isolates of S. maltophilia obtained from two cystic fibrosis patients were completely characterised, mainly by means of ESI-MS and NMR spectroscopy. The results showed that, although the two isolates were recovered from two different patients living in different countries (Italy and France), the exopolysaccharides produced have an identical primary structure, with the following repeating unit: The exopolysaccharide is highly negatively charged for the presence of three uronic acids on four residues in the repeating unit. Moreover, an ether-linked d-lactate substituent is located on C-3 and one O-acetyl group on C-4 of the galacturonic acid side chain. Another O-acetyl group substitutes C-2 of the galacturonic acid in the backbone, making this primary structure unique.
NMR, exopolysaccharide, Stenotrophomonas maltophilia, ESI-MS, cystic fibrosis, primary structure
Structure type: polymer chemical repeating unit
Location inside paper: p.1919, formula 2, deAc-SMA-EPS
Compound class: EPS
Contained glycoepitopes: IEDB_115136,IEDB_140630,IEDB_142488,IEDB_146664,IEDB_423153,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, methylation, GLC-MS, sugar analysis, ESI-MS, acid hydrolysis, GLC, Smith degradation, de-O-acetylation, NMR-1D, carbodiimide reduction
Comments, role: de-O-acetylated EPS.
Related record ID(s): 26157, 26577, 27028
NCBI Taxonomy refs (TaxIDs): 40324
Show glycosyltransferases
NMR conditions: in D2O at 343 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
4,4 bDGlcp 103.35 74.48 75.30 80.36 75.36 61.47
4,3,3 lRLac 182.12 76.60 19.63
4,3 bDGalpA 104.33 70.57 81.25 68.34 76.37 175.32
4 bDGalpA 103.39 71.24 81.69 78.94 75.96 174.50
bDGlcpA 103.39 73.65 75.30 81.86 76.23 175.42
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
4,4 bDGlcp 4.90 3.33 3.68 3.55 3.55 3.72-3.92
4,3,3 lRLac - 4.15 1.40
4,3 bDGalpA 4.68 3.68 3.53 4.35 4.00 -
4 bDGalpA 4.50 3.83 4.00 4.68 4.05 -
bDGlcpA 4.50 3.41 3.68 3.75 3.89 -
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
4,4 bDGlcp 103.35/4.90 74.48/3.33 75.30/3.68 80.36/3.55 75.36/3.55 61.47/3.72-3.92
4,3,3 lRLac 76.60/4.15 19.63/1.40
4,3 bDGalpA 104.33/4.68 70.57/3.68 81.25/3.53 68.34/4.35 76.37/4.00
4 bDGalpA 103.39/4.50 71.24/3.83 81.69/4.00 78.94/4.68 75.96/4.05
bDGlcpA 103.39/4.50 73.65/3.41 75.30/3.68 81.86/3.75 76.23/3.89
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 4,4 | bDGlcp | 4.90 | 3.33 | 3.68 | 3.55 | 3.55 | 3.72 3.92 |
| 4,3,3 | lRLac |
| 4.15 | 1.40 | |
| 4,3 | bDGalpA | 4.68 | 3.68 | 3.53 | 4.35 | 4.00 |
|
| 4 | bDGalpA | 4.50 | 3.83 | 4.00 | 4.68 | 4.05 |
|
| | bDGlcpA | 4.50 | 3.41 | 3.68 | 3.75 | 3.89 |
|
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 4,4 | bDGlcp | 103.35 | 74.48 | 75.30 | 80.36 | 75.36 | 61.47 |
| 4,3,3 | lRLac | 182.12 | 76.60 | 19.63 | |
| 4,3 | bDGalpA | 104.33 | 70.57 | 81.25 | 68.34 | 76.37 | 175.32 |
| 4 | bDGalpA | 103.39 | 71.24 | 81.69 | 78.94 | 75.96 | 174.50 |
| | bDGlcpA | 103.39 | 73.65 | 75.30 | 81.86 | 76.23 | 175.42 |
|
There is only one chemically distinct structure: