Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
The structure was elucidated in this paperNCBI PubMed ID: 21665197Publication DOI: 10.1016/j.carres.2011.05.015Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: A. Choma <adam.choma

poczta.umcs.lublin.pl>; achoma

hektor.umcs.lublin.pl
Institutions: Department of Genetics and Microbiology, Maria Curie-Sklodowska University, 19 Akademicka St., 20-033 Lublin, Poland
Periplasmic, cyclic β-glucans isolated from Bradyrhizobium elkanii, Bradyrhizobium liaoningense, and Bradyrhizobium yuanmingense strains have been investigated by means of Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry (MALDI-TOF MS), 1D and 2D nuclear magnetic resonance (NMR), as well as standard chemical methods. These compounds are built of 10-13 d-glucose residues. The main fractions contain molecules assembled of 12 hexose units (M(w)=1945.363Da). Glucose monomers are linked by β-(1→3) or β-(1→6) glycosidic bonds. The ratio of β-(1→3) to β-(1→6) linked glucose is approximately 1:2. Moreover, methylation analysis demonstrated the presence of terminal, non-reducing, as well as branched (i.e., 3- and 6-substituted) glucoses. Thus, the basic structure of the investigated compounds is similar to that of periplasmic oligosaccharides from Bradyrhizobium japonicum and Azorhizobium caulinodans strains. The analyzed cyclic β-glucans are substituted by phosphocholine (PC) (one or two residues per ring) and highly decorated with acetate and succinate. The substituents are arranged diversely in the population of cyclic β-glucan molecules. The concentrations of cyclic β-glucans in Bradyrhizobium periplasmic space are osmotically regulated and increase in response to a decrease of medium osmolarity.
MALDI-TOF, Bradyrhizobium, cyclic-b-glucan, osmoregulation, Phosphocholinyl and succinyl substituents
Structure type: cyclic polymer repeating unit ; n=12
Location inside paper: abstract
Trivial name: periplasmic cyclic β-1,3-glucan
Contained glycoepitopes: IEDB_135614,IEDB_141806,IEDB_142488,IEDB_146664,IEDB_241101,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, methylation, NMR-2D, GC-MS, HF solvolysis, de-O-acylation, MALDI-TOF MS, composition analysis, NMR-1D
Comments, role: b-(1-3);(1-6)-D-glucans from the Bradyrhizobium strains may be substituted with succinate (from 1 to 3), acetate, and phosphocholine residues (1 or 2 per glucan ring).
Related record ID(s): 26164, 26584
NCBI Taxonomy refs (TaxIDs): 29448,
43992,
108015Reference(s) to other database(s): GTC:G26777BZ
Show glycosyltransferases
NMR conditions: in D2O at 313 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
bDGlcp 105.56 74.60 77.20 70.90 76.50 70.29
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
bDGlcp 4.524 3.336 3.498 3.498 3.640 3.884-4.209
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
bDGlcp 105.56/4.524 74.60/3.336 77.20/3.498 70.90/3.498 76.50/3.640 70.29/3.884-4.209
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| | bDGlcp | 4.524 | 3.336 | 3.498 | 3.498 | 3.640 | 3.884 4.209 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| | bDGlcp | 105.56 | 74.60 | 77.20 | 70.90 | 76.50 | 70.29 |
|
There is only one chemically distinct structure: