Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Host organism: Homo sapiens
Associated disease: diarrhea [ICD11:
ME05.1 
, ICD11:
SA55 
]
The structure was elucidated in this paperNCBI PubMed ID: 21232736Publication DOI: 10.1016/j.carres.2010.12.009Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: perepel

ioc.ac.ru
Institutions: N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia
The O-polysaccharide of Vibrio cholerae O43 was studied using chemical analyses, triflic acid solvolysis and 2D NMR spectroscopy, including (1)H/(1)H COSY, TOCSY, NOESY and (1)H/(13)C gradient-selected HSQC experiments. The following structure of the tetrasaccharide repeating unit of the polysaccharide was established: →3)-β-D-Quip4NAcyl-(1→3)-α-D-GalpNAcA-(1→4)-α-D-GalpNAc-(1→3)-α-D-QuipNAc-(1→ where D-QuiNAc stands for 2-acetamido-2,6-dideoxy-D-glucose, D-Qui4NAcyl for 4-(N-acetyl-L-allothreonyl)amino-4,6-dideoxy-D-glucose and D-GalNAcA for 2-acetamido-2-deoxy-D-galacturonic acid.
Lipopolysaccharide, bacterial polysaccharide structure, Vibrio cholerae, 4-amino-4, O-antigen gene cluster, L-allothreonine, 6-D-dideoxy-D-glucose
Structure type: oligomer
Location inside paper: p.431, 2
Methods: 13C NMR, 1H NMR, NMR-2D, DNA sequencing, sugar analysis, GLC, triflic acid solvolysis, delipidation, function analysis of gene clusters
Biosynthesis and genetic data: genetic data
Comments, role: Solvolysis of the OPS with triflic acid.
Related record ID(s): 26311, 26912
NCBI Taxonomy refs (TaxIDs): 666Reference(s) to other database(s): GTC:G05137XC
Show glycosyltransferases
NMR conditions: in D2O at 303(H) K
[as TSV]
13C NMR data:
missing...
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
4,2 Ac - 2.00-2.07
4 aDGalpNA 5.17 4.22 3.97 4.33 4.52 -
2 Ac - 2.00-2.07
xDGalN-ol 3.57-3.61 4.12 4.00 3.79 3.99 3.68-3.68
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 4,2 | Ac |
| 2.00 2.07 | |
| 4 | aDGalpNA | 5.17 | 4.22 | 3.97 | 4.33 | 4.52 |
|
| 2 | Ac |
| 2.00 2.07 | |
| | xDGalN-ol | 3.57 3.61 | 4.12 | 4.00 | 3.79 | 3.99 | 3.68 3.68 |
|
There is only one chemically distinct structure: