Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Host organism: Homo sapiens
Associated disease: bacillary dysentery [ICD11:
1A02 
, ICD11:
XN7HG 
];
bacillary dysentery (shigellosis) [ICD11:
1A02 
, ICD11:
SA56 
, ICD11:
XN7HG 
];
infection due to Shigella boydii [ICD11:
XN8RN 
]
The structure was elucidated in this paperNCBI PubMed ID: 21057010Journal NLM ID: 2985120RPublisher: American Society for Microbiology
Correspondence: brockhau

queensu.ca; wanglei

nankai.edu.cn
Institutions: TEDA School of Biological Sciences and Biotechnology, Nankai University, Hongda Street, TEDA, Tianjin 300457, P.R.China, Tianjin Key Laboratory of Microbial Functional Genomics, P. R. China, Department of Medicine and Department of Biochemistry, Queen's University, Kingston, ON, Canada, and Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, P. R. China, Department of Chemistry, Queen's University, Kingston, ON, Canada.
The O-antigen is the outer part of the lipopolysaccharide (LPS) in the outer membrane of Gram-negative bacteria and contains many repeats of an oligosaccharide unit. It contributes to antigenic variability and is essential to the full function and virulence of bacteria. Shigella is a Gram-negative human pathogen that causes diarrhea in humans. The O-antigen of Shigella boydii type 14 consists of repeating oligosaccharide units with the structure [→6 DGalp α1→4 DGlcpA β1→6 DGalp β1→4 DGalp β1→4 DGlcpNAc β1→]n. The wfeD gene in the O-antigen gene cluster of Shigella boydii type 14 was proposed to encode a galactosyltransferase (GalT) involved in O-antigen synthesis. We confirmed here that the wfeD gene product is a β4GalT that synthesizes the Galβ1-4GlcNAcα-R linkage. WfeD was expressed in E.coli and the activity characterized using UDP-[(3)H]Gal as the donor substrate and the synthetic acceptor substrate GlcNAcα-pyrophosphate-(CH2)11-O-phenyl. Enzyme product was analyzed by LC-MS, HPLC, NMR and galactosidase digestion. The enzyme was shown to be specific for the UDP-Gal donor substrate and required pyrophosphate in the acceptor substrate. Divalent metal ions such as Mn(2+), Ni(2+), and surprisingly also Pb(2+), enhanced the enzyme activity. Mutational analysis showed that the Glu101 residue within a DxD motif is essential for activity, possibly by forming the catalytic nucleophile. The Lys211 residue was also shown to be required for activity and may be involved in binding the negatively charged acceptor substrate. Our study revealed that the β4-GalT WfeD is a novel enzyme that has virtually no sequence similarity to mammalian β4GalT although it catalyzes a similar reaction.
structure, virulence, O-antigen, gene cluster, specific, galactosyltransferase, Shigella boydii
Structure type: oligomer
Location inside paper: p.454 table 3
Aglycon: ->1) 11-phenoxyundecanol (CH2)11OPh = SMILES C1=CC=CC=C1OCCCCCCCCCCCO
Compound class: O-antigen
Contained glycoepitopes: IEDB_130646,IEDB_135813,IEDB_136044,IEDB_137340,IEDB_137472,IEDB_140108,IEDB_140122,IEDB_141794,IEDB_141807,IEDB_150077,IEDB_151531,IEDB_190606,SB_165,SB_166,SB_187,SB_195,SB_30,SB_7,SB_88
Methods: 13C NMR, 1H NMR, SDS-PAGE, ESI-MS, Western blotting, MALDI-TOF MS, genetic methods, biochemical methods, HPLC, LC-MS, mutation analysis
Biological activity: galactosyltransferase activity data
Enzymes that release or process the structure: WfeD (b-1,4-galactosyltransferase)
Biosynthesis and genetic data: genetic data
Synthetic data: chemical and chemoenzymatic
Related record ID(s): 26391
NCBI Taxonomy refs (TaxIDs): 621
Show glycosyltransferases
NMR conditions: in D2O at 298 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
0,0,4 bDGalp 103.4 70.8 73.1 68.8 ? ?
0,0,2 Ac
0,0 ?DGlcpN 94.7 53.1 69.4 79.1 ? ?
0 P
P
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
0,0,4 bDGalp 4.345 3.538 3.465 3.792 ? ?
0,0,2 Ac
0,0 ?DGlcpN 5.561 4.027 3.846 3.626 ? ?
0 P
P
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
0,0,4 bDGalp 103.4/4.345 70.8/3.538 73.1/3.465 68.8/3.792 ?/? ?/?
0,0,2 Ac
0,0 ?DGlcpN 94.7/5.561 53.1/4.027 69.4/3.846 79.1/3.626 ?/? ?/?
0 P
P
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 0,0,4 | bDGalp | 4.345 | 3.538 | 3.465 | 3.792 | ? | ? |
| 0,0,2 | Ac | |
| 0,0 | ?DGlcpN | 5.561 | 4.027 | 3.846 | 3.626 | ? | ? |
| 0 | P | |
| | P | |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 0,0,4 | bDGalp | 103.4 | 70.8 | 73.1 | 68.8 | ? | ? |
| 0,0,2 | Ac | |
| 0,0 | ?DGlcpN | 94.7 | 53.1 | 69.4 | 79.1 | ? | ? |
| 0 | P | |
| | P | |
|
 The spectrum also has 4 signals at unknown positions (not plotted). |
There is only one chemically distinct structure: