Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Host organism: Homo sapiens
Associated disease: cystic fibrosis (CF) [ICD11:
CA25 
]
The structure was elucidated in this paperNCBI PubMed ID: 22055818Publication DOI: 10.1016/j.carres.2011.10.011Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: pcescutti

units.it
Institutions: Dipartimento di Scienze della Vita, Università di Trieste, via L. Giorgieri 1, 34134 Trieste, Italy, Istituto di Chimica e Tecnologia dei Polimeri, Via Paolo Gaifami 18, 95126 Catania, Italy
Cepacian is an exopolysaccharide produced by the majority of the isolates belonging to the Burkholderia cepacia complex bacteria, a group of 17 species, some of which infect cystic fibrosis patients, sometime with fatal outcome. The repeating unit of cepacian consists of a backbone having a trisaccharidic repeating unit with three side chains, as reported in the formula below. The exopolysaccharide is also acetylated, carrying from one to three acetyl esters per repeating unit, depending on the strain examined. The consequences of O-acetyl substitution in a polysaccharide are important both for its biological functions and for industrial applications, including the preparation of conjugated vaccines, since O-acetyl groups are important immunogenic determinants. The location of acetyl groups was achieved by NMR spectroscopy and ESI mass spectrometry and revealed that these substituents are scattered in non-stoichiometric ratio on many sugar residues in different positions, a feature which adds to the already unique carbohydrate structure of the polysaccharide.
NMR, polysaccharide structure, ESI-MS, cystic fibrosis, O-Acetyl groups, Burkholderia cepacia complex
Structure type: oligomer
Location inside paper: p.2906, scheme 1, table S2
Contained glycoepitopes: IEDB_136044,IEDB_137472,IEDB_1394181,IEDB_141794,IEDB_190606,SB_165,SB_166,SB_187,SB_195,SB_7,SB_88
Methods: 13C NMR, 1H NMR, NMR-2D, sugar analysis, enzymatic hydrolysis, ESI-MS, de-O-acetylation
Enzymes that release or process the structure: bacterial lyase
Comments, role: the enzymatic product of the native and deacetylated cepacian
Related record ID(s): 26158, 26579, 26580, 26581, 26582, 27032, 27033
NCBI Taxonomy refs (TaxIDs): 60550Reference(s) to other database(s): GTC:G68767VN
Show glycosyltransferases
NMR conditions: in D2O at 323 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
2,6 Ac
2 bDGalp 105.16 ? ? 69.42 ? 64.56
bDRhap 94.37 82.11 ? ? ? 17.57
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
2,6 Ac
2 bDGalp 4.53 3.66 3.70 3.97 3.91 4.30
bDRhap 4.95 4.14 3.60 3.35 3.44 1.30
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
2,6 Ac
2 bDGalp 105.16/4.53 ?/3.66 ?/3.70 69.42/3.97 ?/3.91 64.56/4.30
bDRhap 94.37/4.95 82.11/4.14 ?/3.60 ?/3.35 ?/3.44 17.57/1.30
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 2,6 | Ac | |
| 2 | bDGalp | 4.53 | 3.66 | 3.70 | 3.97 | 3.91 | 4.30 |
| | bDRhap | 4.95 | 4.14 | 3.60 | 3.35 | 3.44 | 1.30 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 2,6 | Ac | |
| 2 | bDGalp | 105.16 | ? | ? | 69.42 | ? | 64.56 |
| | bDRhap | 94.37 | 82.11 | ? | ? | ? | 17.57 |
|
 The spectrum also has 6 signals at unknown positions (not plotted). |
There is only one chemically distinct structure: