Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Associated disease: diarrhea [ICD11:
ME05.1 
, ICD11:
SA55 
]
The structure was elucidated in this paperNCBI PubMed ID: 22817460Publication DOI: 10.1134/S0006297912060077Journal NLM ID: 0376536Publisher: Nauka/Interperiodica
Correspondence: olga.ovchinnikova

gmail.com
Institutions: Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia
A polysaccharide was isolated from the opportunistic human pathogen Providencia alcalifaciens O45:H26 by extraction with aqueous phenol and studied by sugar and methylation analyses along with (1)H and (13)C NMR spectroscopy, including two-dimensional ROESY and H-detected (1)H,(13)C HSQC experiments. The polysaccharide contains N-acetylglucosamine and N-acetylmuramic acid (D-GlcpNAc3Rlac) amidated with L-alanine and has the following structure:-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc3(Rlac-L-Ala)-(1-. The polysaccharide possesses a remarkable structural similarity to the bacterial cell wall peptidoglycan. It is not unique to the strain studied but is common to strains of at least four P. alcalifaciens O-serogroups (O3, O24, O38, and O45). No evidence was obtained that the polysaccharide is associated with the LPS, and hence it might represent a bacterial capsule component.
Lipopolysaccharide, Providencia alcalifaciens, Bacterial polysaccharide, peptidoglycan, N-acetylmuramic acid
Structure type: polymer chemical repeating unit
Location inside paper: abstract, p.611, fig.3
Trivial name: peptidoglycan-related polysaccharide
Compound class: CPS, O-polysaccharide
Contained glycoepitopes: IEDB_135813,IEDB_137340,IEDB_141807,IEDB_151531,IEDB_153212,IEDB_241099,IEDB_423114,IEDB_423150,SB_74,SB_85
Methods: 13C NMR, 1H NMR, methylation, GLC-MS, NMR-2D, sugar analysis
NCBI Taxonomy refs (TaxIDs): 126385
Show glycosyltransferases
NMR conditions: in D2O at 303 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
4,2 Ac 175.7 23.2
4 bDGlcpN 101.5 56.5 73.3 80.8 75.9 61.5
2 Ac 175.4 23.4
3,1 xLAla? 174.7 50.4 17.4
3 lRLac 178.8 79.3 17.4
bDGlcpN 102.6 55.8 80.2 76.2 76.2 60.9
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
4,2 Ac - 2.03
4 bDGlcpN 4.50 3.75 3.68 3.53 3.46 3.68-3.84
2 Ac - 1.98
3,1 xLAla? - 4.30 1.43
3 lRLac - 4.39 1.37
bDGlcpN 4.52 3.79 3.63 4.85 3.50 3.69-3.87
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
4,2 Ac 23.2/2.03
4 bDGlcpN 101.5/4.50 56.5/3.75 73.3/3.68 80.8/3.53 75.9/3.46 61.5/3.68-3.84
2 Ac 23.4/1.98
3,1 xLAla? 50.4/4.30 17.4/1.43
3 lRLac 79.3/4.39 17.4/1.37
bDGlcpN 102.6/4.52 55.8/3.79 80.2/3.63 76.2/4.85 76.2/3.50 60.9/3.69-3.87
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 4,2 | Ac |
| 2.03 | |
| 4 | bDGlcpN | 4.50 | 3.75 | 3.68 | 3.53 | 3.46 | 3.68 3.84 |
| 2 | Ac |
| 1.98 | |
| 3,1 | xLAla? |
| 4.30 | 1.43 | |
| 3 | lRLac |
| 4.39 | 1.37 | |
| | bDGlcpN | 4.52 | 3.79 | 3.63 | 4.85 | 3.50 | 3.69 3.87 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 4,2 | Ac | 175.7 | 23.2 | |
| 4 | bDGlcpN | 101.5 | 56.5 | 73.3 | 80.8 | 75.9 | 61.5 |
| 2 | Ac | 175.4 | 23.4 | |
| 3,1 | xLAla? | 174.7 | 50.4 | 17.4 | |
| 3 | lRLac | 178.8 | 79.3 | 17.4 | |
| | bDGlcpN | 102.6 | 55.8 | 80.2 | 76.2 | 76.2 | 60.9 |
|
There is only one chemically distinct structure: