Taxonomic group: bacteria / Firmicutes
(Phylum: Firmicutes)
Associated disease: infection due to Bacillus anthracis [ICD11:
XN94F 
]
The structure was elucidated in this paperNCBI PubMed ID: 22556058Publication DOI: 10.1093/glycob/cws080Journal NLM ID: 9104124Publisher: IRL Press at Oxford University Press
Correspondence: sforsb

ccrc.uga.edu
Institutions: Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA
Bacillus anthracis CDC 684 is a naturally occurring, avirulent variant and close relative of the highly pathogenic B. anthracis Vollum. Bacillus anthracis CDC 684 contains both virulence plasmids, pXO1 and pXO2, yet is non-pathogenic in animal models, prompting closer scrutiny of the molecular basis of attenuation. We structurally characterized the secondary cell wall polysaccharide (SCWP) of B. anthracis CDC 684 (Ba684) using chemical and NMR spectroscopy analysis. The SCWP consists of a HexNAc trisaccharide backbone having identical structure as that of B. anthracis Pasteur, Sterne and Ames, →4)-β-D-ManpNAc-(1→4)-β-D-GlcpNAc-(1→6)-α-D-GlcpNAc-(1→. Remarkably, although the backbone is fully polymerized, the SCWP is the devoid of all galactosyl side residues, a feature which normally comprises 50% of the glycosyl residues on the highly galactosylated SCWPs from pathogenic strains. This observation highlights the role of defective wall assembly in virulence and indicates that polymerization occurs independently of galactose side residue attachment. Of particular interest, the polymerized Ba684 backbone retains the substoichiometric pyruvate acetal, O-acetate and amino group modifications found on SCWPs from normal B. anthracis strains, and immunofluorescence analysis confirms that SCWP expression coincides with the ability to bind the surface layer homology (SLH) domain containing S-layer protein extractable antigen-1. Pyruvate was previously demonstrated as part of a conserved epitope, mediating SLH-domain protein attachment to the underlying peptidoglycan layer. We find that a single repeating unit, located at the distal (non-reducing) end of the Ba684 SCWP, is structurally modified and that this modification is present in identical manner in the SCWPs of normal B. anthracis strains. These polysaccharides terminate in the sequence: (S)-4,6-O-(1-carboxyethylidene)-β-D-ManpNAc-(1→4)-[3-O-acetyl]-β-D-GlcpNAc-(1→6)-α-D-GlcpNH(2)-(1→.
structure, polysaccharide, cell wall, Bacillus anthracis, pyruvylation
Structure type: oligomer
Location inside paper: abstract, p.1109, fig.7
Compound class: cell wall polysaccharide
Contained glycoepitopes: IEDB_135813,IEDB_137340,IEDB_141807,IEDB_151531,IEDB_885813
Methods: 13C NMR, 1H NMR, GLC-MS, NMR-2D, GC-MS, HF solvolysis, sugar analysis, NMR-1D
Comments, role: terminate part of the cell wall polysaccharide (see ID: 27153)
Related record ID(s): 27153
NCBI Taxonomy refs (TaxIDs): 568206
Show glycosyltransferases
NMR conditions: in D2O at 298 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
4,6,4,6 xSPyr 176.67 102.97 25.79
4,6,4,2 Ac 176 ?
4,6,4 bDManpN 101.08 54.70 70.16 75.12 68.01 65.32
4,6,2 Ac 174.30 21.72
4,6,3 Ac 175.58 23.21
4,6 bDGlcpN
4 aDGlcpN 101.30 56.15 74.12 70.68 72.6 69.3
Subst
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
4,6,4,6 xSPyr - - 1.45
4,6,4,2 Ac - 2.07
4,6,4 bDManpN 4.87 4.53 3.95 3.58 3.37 3.72-3.99
4,6,2 Ac - 2.09
4,6,3 Ac - 1.98
4,6 bDGlcpN 4.67 3.88 5.08 3.92 3.56 3.73-3.87
4 aDGlcpN 5.27 2.8 3.56 3.39 3.79 3.83-4.10
Subst
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
4,6,4,6 xSPyr 25.79/1.45
4,6,4,2 Ac ?/2.07
4,6,4 bDManpN 101.08/4.87 54.70/4.53 70.16/3.95 75.12/3.58 68.01/3.37 65.32/3.72-3.99
4,6,2 Ac 21.72/2.09
4,6,3 Ac 23.21/1.98
4,6 bDGlcpN NMR TSV error 2: unequal length of 13C and 1H datasets
4 aDGlcpN 101.30/5.27 56.15/2.8 74.12/3.56 70.68/3.39 72.6/3.79 69.3/3.83-4.10
Subst
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 4,6,4,6 | xSPyr |
|
| 1.45 | |
| 4,6,4,2 | Ac |
| 2.07 | |
| 4,6,4 | bDManpN | 4.87 | 4.53 | 3.95 | 3.58 | 3.37 | 3.72 3.99 |
| 4,6,2 | Ac |
| 2.09 | |
| 4,6,3 | Ac |
| 1.98 | |
| 4,6 | bDGlcpN | 4.67 | 3.88 | 5.08 | 3.92 | 3.56 | 3.73 3.87 |
| 4 | aDGlcpN | 5.27 | 2.8 | 3.56 | 3.39 | 3.79 | 3.83 4.10 |
| | Subst | |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 4,6,4,6 | xSPyr | 176.67 | 102.97 | 25.79 | |
| 4,6,4,2 | Ac | 176 | ? | |
| 4,6,4 | bDManpN | 101.08 | 54.70 | 70.16 | 75.12 | 68.01 | 65.32 |
| 4,6,2 | Ac | 174.30 | 21.72 | |
| 4,6,3 | Ac | 175.58 | 23.21 | |
| 4,6 | bDGlcpN | |
| 4 | aDGlcpN | 101.30 | 56.15 | 74.12 | 70.68 | 72.6 | 69.3 |
| | Subst | |
|
 The spectrum also has 1 signal at unknown position (not plotted). |
There is only one chemically distinct structure: