Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Host organism: Homo sapiens
Associated disease: infection due to Campylobacter jejuni [ICD11:
XN4Q5 
]
The structure was elucidated in this paperNCBI PubMed ID: 22859570Publication DOI: 10.1074/mcp.M112.021519Journal NLM ID: 101125647Publisher: Bethesda, MD: ASBMB
Correspondence: cszymans

ualberta.ca
Institutions: Alberta Glycomics Centre and Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada
The foodborne bacterial pathogen, Campylobacter jejuni, possesses an N-linked protein glycosylation (pgl) pathway involved in adding conserved heptasaccharides to asparagine-containing motifs of >60 proteins, and releasing the same glycan into its periplasm as free oligosaccharides. In this study, comparative genomics of all 30 fully sequenced Campylobacter taxa revealed conserved pgl gene clusters in all but one species. Structural, phylogenetic and immunological studies showed that the N-glycosylation systems can be divided into two major groups. Group I includes all thermotolerant taxa, capable of growth at the higher body temperatures of birds, and produce the C. jejuni-like glycans. Within group I, the niche-adapted C. lari subgroup contain the smallest genomes among the epsilonproteobacteria, and are unable to glucosylate their pgl pathway glycans potentially reminiscent of the glucosyltransferase regression observed in the O-glycosylation system of Neisseria species. The nonthermotolerant Campylobacters, which inhabit a variety of hosts and niches, comprise group II and produce an unexpected diversity of N-glycan structures varying in length and composition. This includes the human gut commensal, C. hominis, which produces at least four different N-glycan structures, akin to the surface carbohydrate diversity observed in the well-studied commensal, Bacteroides. Both group I and II glycans are immunogenic and cell surface exposed, making these structures attractive targets for vaccine design and diagnostics.
Campylobacter jejuni, gene cluster, N-glycosylation
Structure type: oligomer
Location inside paper: table S3
Trivial name: free OS
Compound class: N-glycan
Contained glycoepitopes: IEDB_130648,IEDB_137473,IEDB_1391961,IEDB_141584,IEDB_142488,IEDB_146664,IEDB_885822,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, NMR-2D, Western blotting, MALDI-TOF MS, HPAEC-PAD, LC-MS, conjugation, phylogenetic analysis
Related record ID(s): 27263, 28518, 28519, 28520, 28521, 28522, 28524, 28525, 28526, 28527, 28528, 28529
NCBI Taxonomy refs (TaxIDs): 197Reference(s) to other database(s): GTC:G66397DB
Show glycosyltransferases
NMR conditions: in D2O at 298 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3,4,4,3 bDGlcp 106.1 74.2 76.9 71.0 76.9 62.1
3,4,4,2 Ac
3,4,4,4,4,2 Ac
3,4,4,4,4 aDGalpN 99.5 51.4 68.4 69.5 72.3 61.9
3,4,4,4,2 Ac
3,4,4,4 aDGalpN 98.2 51.6 67.8 77.4 71.7 60.1
3,4,4 aDGalpN 99.9 50.6 77.4 75.6 72.4 60.7
3,4,2 Ac
3,4 aDGalpN 99.5 51.6 67.8 77.3 72.5 60.9
3,2 Ac
3 aDGalpN 98.0 50.7 68.0 77.5 72.7 60.9
2 Ac
4 Ac
bDQuipN4N 95.6 57.3 75.9 58.2 72.4 17.7
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3,4,4,3 bDGlcp 4.53 3.31 3.48 3.39 3.42 3.70-3.91
3,4,4,2 Ac
3,4,4,4,4,2 Ac
3,4,4,4,4 aDGalpN 5.06 4.23 4.04 4.05 4.39 3.73-3.77
3,4,4,4,2 Ac
3,4,4,4 aDGalpN 5.12 4.28 4.18 4.12 4.49 3.67-3.77
3,4,4 aDGalpN 5.01 4.53 4.15 4.35 4.44 3.56-3.65
3,4,2 Ac
3,4 aDGalpN 5.01 4.28 4.13 4.12 4.39 3.66-3.73
3,2 Ac
3 aDGalpN 5.21 4.23 3.84 4.05 3.87 3.71-3.76
2 Ac
4 Ac
bDQuipN4N 4.73 3.78 3.80 3.82 3.53 1.17
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3,4,4,3 bDGlcp 106.1/4.53 74.2/3.31 76.9/3.48 71.0/3.39 76.9/3.42 62.1/3.70-3.91
3,4,4,2 Ac
3,4,4,4,4,2 Ac
3,4,4,4,4 aDGalpN 99.5/5.06 51.4/4.23 68.4/4.04 69.5/4.05 72.3/4.39 61.9/3.73-3.77
3,4,4,4,2 Ac
3,4,4,4 aDGalpN 98.2/5.12 51.6/4.28 67.8/4.18 77.4/4.12 71.7/4.49 60.1/3.67-3.77
3,4,4 aDGalpN 99.9/5.01 50.6/4.53 77.4/4.15 75.6/4.35 72.4/4.44 60.7/3.56-3.65
3,4,2 Ac
3,4 aDGalpN 99.5/5.01 51.6/4.28 67.8/4.13 77.3/4.12 72.5/4.39 60.9/3.66-3.73
3,2 Ac
3 aDGalpN 98.0/5.21 50.7/4.23 68.0/3.84 77.5/4.05 72.7/3.87 60.9/3.71-3.76
2 Ac
4 Ac
bDQuipN4N 95.6/4.73 57.3/3.78 75.9/3.80 58.2/3.82 72.4/3.53 17.7/1.17
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 3,4,4,3 | bDGlcp | 4.53 | 3.31 | 3.48 | 3.39 | 3.42 | 3.70 3.91 |
| 3,4,4,2 | Ac | |
| 3,4,4,4,4,2 | Ac | |
| 3,4,4,4,4 | aDGalpN | 5.06 | 4.23 | 4.04 | 4.05 | 4.39 | 3.73 3.77 |
| 3,4,4,4,2 | Ac | |
| 3,4,4,4 | aDGalpN | 5.12 | 4.28 | 4.18 | 4.12 | 4.49 | 3.67 3.77 |
| 3,4,4 | aDGalpN | 5.01 | 4.53 | 4.15 | 4.35 | 4.44 | 3.56 3.65 |
| 3,4,2 | Ac | |
| 3,4 | aDGalpN | 5.01 | 4.28 | 4.13 | 4.12 | 4.39 | 3.66 3.73 |
| 3,2 | Ac | |
| 3 | aDGalpN | 5.21 | 4.23 | 3.84 | 4.05 | 3.87 | 3.71 3.76 |
| 2 | Ac | |
| 4 | Ac | |
| | bDQuipN4N | 4.73 | 3.78 | 3.80 | 3.82 | 3.53 | 1.17 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 3,4,4,3 | bDGlcp | 106.1 | 74.2 | 76.9 | 71.0 | 76.9 | 62.1 |
| 3,4,4,2 | Ac | |
| 3,4,4,4,4,2 | Ac | |
| 3,4,4,4,4 | aDGalpN | 99.5 | 51.4 | 68.4 | 69.5 | 72.3 | 61.9 |
| 3,4,4,4,2 | Ac | |
| 3,4,4,4 | aDGalpN | 98.2 | 51.6 | 67.8 | 77.4 | 71.7 | 60.1 |
| 3,4,4 | aDGalpN | 99.9 | 50.6 | 77.4 | 75.6 | 72.4 | 60.7 |
| 3,4,2 | Ac | |
| 3,4 | aDGalpN | 99.5 | 51.6 | 67.8 | 77.3 | 72.5 | 60.9 |
| 3,2 | Ac | |
| 3 | aDGalpN | 98.0 | 50.7 | 68.0 | 77.5 | 72.7 | 60.9 |
| 2 | Ac | |
| 4 | Ac | |
| | bDQuipN4N | 95.6 | 57.3 | 75.9 | 58.2 | 72.4 | 17.7 |
|
There is only one chemically distinct structure: