Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Host organism: Homo sapiens
Associated disease: bacillary dysentery [ICD11:
1A02 
, ICD11:
XN7HG 
];
infection due to Shigella flexneri [ICD11:
XN7Y2 
]
The structure was elucidated in this paperNCBI PubMed ID: 23049947Publication DOI: 10.1371/journal.pone.0046095Journal NLM ID: 101285081Publisher: San Francisco, CA: Public Library of Science
Correspondence: xujianguo

icdc.cn
Institutions: State Key Laboratory for Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, China CDC, Changping, Beijing, China
Shigella flexneri is the major pathogen causing bacillary dysentery in developing countries. S. flexneri is divided into at least 16 serotypes based on the combination of antigenic determinants present in the O-antigen. All the serotypes (except for serotype 6) share a basic O-unit containing one N-acetyl-d-glucosamine and three l-rhamnose residues, whereas differences between the serotypes are conferred by phage-encoded glucosylation and/or O-acetylation. Serotype Xv is a newly emerged and the most prevalent serotype in China, which can agglutinate with both MASF IV-1 and 7,8 monoclonal antibodies. The factor responsible for the presence of MASF IV-1 (E1037) epitope has not yet been identified. In this study, we analyzed the LPS structure of serotype Xv strains and found that the MASF IV-1 positive phenotype depends on an O-antigen modification with a phosphoethanolamine (PEtN) group attached at position 3 of one of the rhamnose residues. A plasmid carried gene, lpt-O (LPS phosphoethanolamine transferase for O-antigen), mediates the addition of PEtN for serotype Xv and other MASF IV-1 positive strains. These findings reveal a novel serotype conversion mechanism in S. flexneri and show the necessity of further extension of the serotype classification scheme recognizing the MASF IV-1 positive strains as distinctive subtypes.
O-antigen, Shigella flexneri, mechanism, phosphoethanolamine, serotype conversion
Structure type: polymer chemical repeating unit
Location inside paper: p.7, fig.4B
Compound class: O-polysaccharide, O-antigen
Contained glycoepitopes: IEDB_120354,IEDB_123890,IEDB_125613,IEDB_125614,IEDB_127514,IEDB_133752,IEDB_133753,IEDB_133754,IEDB_135813,IEDB_135849,IEDB_136105,IEDB_137340,IEDB_141807,IEDB_141815,IEDB_141816,IEDB_142488,IEDB_143253,IEDB_144998,IEDB_146664,IEDB_151531,IEDB_153213,IEDB_158539,IEDB_225177,IEDB_885823,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, NMR-2D, DNA techniques, Southern blotting
Related record ID(s): 27328, 28652, 28653
NCBI Taxonomy refs (TaxIDs): 623Reference(s) to other database(s): GTC:G67657JQ
Show glycosyltransferases
NMR conditions: in D2O at 313 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3,3,2,3 aDGlcp 95.8 72.6 74.4 70.7 72.6 61.6
3,3,2 aLRhap 101.8 75.4 75.0 72.2 70.7 18.0
3,3,3,0 xXEtN 63.2 41.4
3,3,3 P
3,3 aLRhap 101.9 77.5 76.5 72.3 70.5 17.9
3 aLRhap 102.4 71.9 78.6 73.0 70.2 17.6
2 Ac 175.2 23.8
bDGlcpN 102.7 56.8 82.9 69.7 77.4 62.0
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3,3,2,3 aDGlcp 5.19 3.72 3.83 3.49 4.04 3.78-3.81
3,3,2 aLRhap 5.17 4.42 3.95 3.35 3.70 1.25
3,3,3,0 xXEtN 3.29 4.15
3,3,3 P
3,3 aLRhap 5.15 4.27 4.35 3.60 3.80 1.33
3 aLRhap 4.86 3.86 3.79 3.55 4.01 1.23
2 Ac - 2.10
bDGlcpN 4.82 3.84 3.48 3.49 3.42 3.73-3.92
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3,3,2,3 aDGlcp 95.8/5.19 72.6/3.72 74.4/3.83 70.7/3.49 72.6/4.04 61.6/3.78-3.81
3,3,2 aLRhap 101.8/5.17 75.4/4.42 75.0/3.95 72.2/3.35 70.7/3.70 18.0/1.25
3,3,3,0 xXEtN 63.2/3.29 41.4/4.15
3,3,3 P
3,3 aLRhap 101.9/5.15 77.5/4.27 76.5/4.35 72.3/3.60 70.5/3.80 17.9/1.33
3 aLRhap 102.4/4.86 71.9/3.86 78.6/3.79 73.0/3.55 70.2/4.01 17.6/1.23
2 Ac 23.8/2.10
bDGlcpN 102.7/4.82 56.8/3.84 82.9/3.48 69.7/3.49 77.4/3.42 62.0/3.73-3.92
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 3,3,2,3 | aDGlcp | 5.19 | 3.72 | 3.83 | 3.49 | 4.04 | 3.78 3.81 |
| 3,3,2 | aLRhap | 5.17 | 4.42 | 3.95 | 3.35 | 3.70 | 1.25 |
| 3,3,3,0 | xXEtN | 3.29 | 4.15 | |
| 3,3,3 | P | |
| 3,3 | aLRhap | 5.15 | 4.27 | 4.35 | 3.60 | 3.80 | 1.33 |
| 3 | aLRhap | 4.86 | 3.86 | 3.79 | 3.55 | 4.01 | 1.23 |
| 2 | Ac |
| 2.10 | |
| | bDGlcpN | 4.82 | 3.84 | 3.48 | 3.49 | 3.42 | 3.73 3.92 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 3,3,2,3 | aDGlcp | 95.8 | 72.6 | 74.4 | 70.7 | 72.6 | 61.6 |
| 3,3,2 | aLRhap | 101.8 | 75.4 | 75.0 | 72.2 | 70.7 | 18.0 |
| 3,3,3,0 | xXEtN | 63.2 | 41.4 | |
| 3,3,3 | P | |
| 3,3 | aLRhap | 101.9 | 77.5 | 76.5 | 72.3 | 70.5 | 17.9 |
| 3 | aLRhap | 102.4 | 71.9 | 78.6 | 73.0 | 70.2 | 17.6 |
| 2 | Ac | 175.2 | 23.8 | |
| | bDGlcpN | 102.7 | 56.8 | 82.9 | 69.7 | 77.4 | 62.0 |
|
There is only one chemically distinct structure: