Taxonomic group: bacteria / Bacteroidetes
(Phylum: Bacteroidetes)
Host organism: Homo sapiens
Associated disease: periodontitis [ICD11:
DA0C 
]
The structure was elucidated in this paperNCBI PubMed ID: 23616409Publication DOI: 10.1128/CVI.00139-13Journal NLM ID: 101252125Publisher: American Society for Microbiology
Correspondence: christina.schaeffer

boku.ac.at; Otto Holst <oholst

fz-borstel.de>
Institutions: Department of NanoBiotechnology, NanoGlycobiology Unit, Universitat fur Bodenkultur Wien, Vienna, Austria
Tannerella forsythia is a Gram-negative anaerobic organism that inhabits subgingival plaque biofilms and is covered with a so far unique surface layer composed of two glycoproteins. It belongs to the so-called 'red complex' of bacteria comprising species that are associated with periodontal disease. While the surface layer glycoprotein glycan structure had been elucidated recently and found to be a virulence factor, no structural data on the lipopolysaccharide (LPS) of this organism were available. In this study, the T. forsythia LPS structure was partially elucidated by a combined mass spectrometry (MS) and nuclear magnetic resonance spectroscopy (NMR) approach and initial experiments to characterize its immunostimulatory potential were performed. The T. forsythia LPS is a complex, rough-type LPS with a core region composed of one 3-deoxy-d-manno-oct-2-ulosonic acid (Kdo) residue, three mannose residues, and two glucosamine residues. MS analyses of O-deacylated LPS proved that, in addition, one phosphoethanolamine residue and most likely one galactose-phosphate residue were present, however, their positions could not be identified. Stimulation of human macrophages with T. forsythia LPS resulted in the production of the proinflammatory cytokines interleukin-1 (IL-1), IL-6, and tumor necrosis factor alpha in a dose-dependent manner. The response to T. forsythia LPS was observed only upon stimulation in the presence of fetal calf serum (FCS), whereas no cytokine production was observed in the absence of FCS. This finding suggests that the presence of certain additional cofactors is crucial for the immune response induced by T. forsythia LPS.
Lipopolysaccharide, structure, Kdo, core region, Biofilm, cytokines, Tannerella forsythia
Structure type: oligomer
Location inside paper: p.949, table 1, OS1
Compound class: LPS
Contained glycoepitopes: IEDB_130650,IEDB_130701,IEDB_141793,IEDB_141807,IEDB_144983,IEDB_151531,IEDB_152206,IEDB_153220,IEDB_164174,IEDB_983930,SB_197,SB_198,SB_44,SB_67,SB_72,SB_73
Methods: 13C NMR, 1H NMR, NMR-2D, PCR, SDS-PAGE, acid hydrolysis, ESI-ICR-MS, de-O-acylation with hydrazine, composition analysis, NMR-1D, de-N-acylation, statistical analysis
Biological activity: cytokine production of U-937 macrophages upon LPS stimulation
Comments, role: de-N-O-acylated, dephosphorylated LPS
Related record ID(s): 29727
NCBI Taxonomy refs (TaxIDs): 203275Reference(s) to other database(s): GTC:G28187RG
Show glycosyltransferases
NMR conditions: in D2O at 298 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6 C7 C8
6,6,5,3,6 aDGlcpN 96.8 55.3 71.5 70.6 73.4 61.5
6,6,5,3 aDManp 101.0 71.1 71.3 67.3 72.2 66.7
6,6,5,6,6 aDGlcpN 96.7 55.3 71.4 70.6 73.4 61.5
6,6,5,6 aDManp 104.0 71.2 72.1 67.1 72.1 66.4
6,6,5 aDManp 102.7 71.3 80.1 66.8 72.6 66.6
6,6 aXKdop 175.7 101.0 36.1 67.1 76.8 72.8 70.7 64.7
6 bDGlcpN 102.8 57.3 75.2 71.2 75.6 62.9
xDGlcN-ol 60.1 56.5 67.1 70.5 71.8 73.0
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6 H7 H8
6,6,5,3,6 aDGlcpN 5.15 3.29 3.90 3.50 3.77 3.81-3.88
6,6,5,3 aDManp 4.90 4.02 3.85 3.84 3.82 3.71-4.10
6,6,5,6,6 aDGlcpN 5.23 3.37 3.92 3.52 3.77 3.81-3.88
6,6,5,6 aDManp 5.14 4.11 3.94 3.94 3.67 3.68-4.20
6,6,5 aDManp 5.04 4.16 3.99 3.92 4.22 3.65-4.00
6,6 aXKdop - - 1.87-2.13 4.16 4.13 3.70 3.84 3.66-3.96
6 bDGlcpN 4.60 2.88 3.51 3.49 3.62 3.59-3.62
xDGlcN-ol 3.77-3.87 3.53 4.11 3.95 3.89 3.82-4.16
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6 C7/H7 C8/H8
6,6,5,3,6 aDGlcpN 96.8/5.15 55.3/3.29 71.5/3.90 70.6/3.50 73.4/3.77 61.5/3.81-3.88
6,6,5,3 aDManp 101.0/4.90 71.1/4.02 71.3/3.85 67.3/3.84 72.2/3.82 66.7/3.71-4.10
6,6,5,6,6 aDGlcpN 96.7/5.23 55.3/3.37 71.4/3.92 70.6/3.52 73.4/3.77 61.5/3.81-3.88
6,6,5,6 aDManp 104.0/5.14 71.2/4.11 72.1/3.94 67.1/3.94 72.1/3.67 66.4/3.68-4.20
6,6,5 aDManp 102.7/5.04 71.3/4.16 80.1/3.99 66.8/3.92 72.6/4.22 66.6/3.65-4.00
6,6 aXKdop 36.1/1.87-2.13 67.1/4.16 76.8/4.13 72.8/3.70 70.7/3.84 64.7/3.66-3.96
6 bDGlcpN 102.8/4.60 57.3/2.88 75.2/3.51 71.2/3.49 75.6/3.62 62.9/3.59-3.62
xDGlcN-ol 60.1/3.77-3.87 56.5/3.53 67.1/4.11 70.5/3.95 71.8/3.89 73.0/3.82-4.16
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 | H7 | H8 |
| 6,6,5,3,6 | aDGlcpN | 5.15 | 3.29 | 3.90 | 3.50 | 3.77 | 3.81 3.88 | |
| 6,6,5,3 | aDManp | 4.90 | 4.02 | 3.85 | 3.84 | 3.82 | 3.71 4.10 | |
| 6,6,5,6,6 | aDGlcpN | 5.23 | 3.37 | 3.92 | 3.52 | 3.77 | 3.81 3.88 | |
| 6,6,5,6 | aDManp | 5.14 | 4.11 | 3.94 | 3.94 | 3.67 | 3.68 4.20 | |
| 6,6,5 | aDManp | 5.04 | 4.16 | 3.99 | 3.92 | 4.22 | 3.65 4.00 | |
| 6,6 | aXKdop |
|
| 1.87 2.13 | 4.16 | 4.13 | 3.70 | 3.84 | 3.66 3.96 |
| 6 | bDGlcpN | 4.60 | 2.88 | 3.51 | 3.49 | 3.62 | 3.59 3.62 | |
| | xDGlcN-ol | 3.77 3.87 | 3.53 | 4.11 | 3.95 | 3.89 | 3.82 4.16 | |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 | C7 | C8 |
| 6,6,5,3,6 | aDGlcpN | 96.8 | 55.3 | 71.5 | 70.6 | 73.4 | 61.5 | |
| 6,6,5,3 | aDManp | 101.0 | 71.1 | 71.3 | 67.3 | 72.2 | 66.7 | |
| 6,6,5,6,6 | aDGlcpN | 96.7 | 55.3 | 71.4 | 70.6 | 73.4 | 61.5 | |
| 6,6,5,6 | aDManp | 104.0 | 71.2 | 72.1 | 67.1 | 72.1 | 66.4 | |
| 6,6,5 | aDManp | 102.7 | 71.3 | 80.1 | 66.8 | 72.6 | 66.6 | |
| 6,6 | aXKdop | 175.7 | 101.0 | 36.1 | 67.1 | 76.8 | 72.8 | 70.7 | 64.7 |
| 6 | bDGlcpN | 102.8 | 57.3 | 75.2 | 71.2 | 75.6 | 62.9 | |
| | xDGlcN-ol | 60.1 | 56.5 | 67.1 | 70.5 | 71.8 | 73.0 | |
|
There is only one chemically distinct structure: