Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Associated disease: nosocomial infections [ICD11:
XB25 
]
The structure was elucidated in this paperNCBI PubMed ID: 24785390Publication DOI: 10.1016/j.carres.2014.03.004Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: P. Kosma <paul.kosma

boku.ac.at>
Institutions: Department of Chemistry, University of Natural Resources and Life Sciences, Muthgasse 18, A-1190 Vienna, Austria, Research Center Borstel, Parkallee 22, D-23845, Germany
The α-D-glucopyranosyl-(1→5)-substituted methyl glycosides of 3-deoxy-α-D-manno-oct-2-ulosonic acid (Kdo), 3-deoxy-α-D-lyxo-hept-2-ulosonic acid (Kdh), and d-glycero-α-D-talo-oct-2-ulosonic acid (Ko) were prepared using orthogonally protected glycosyl acceptor derivatives via glycosylation with a torsionally disarmed 4,6-O-benzylidene protected trifluoroacetimidate glucosyl donor followed by global deprotection. The related 6-O-phosphoryl-α-D-glucopyranosyl-(1→5)-substituted Kdo and Kdh derivatives were derived from a benzylidene-protected glucosyl intermediate using phosphoramidite and phosphoryl chloride-based phosphorylation steps, respectively. The deprotected disaccharides serve as ligands to study lectin binding of Acinetobacter lipopolysaccharide core oligosaccharides.
Lipopolysaccharide, Acinetobacter, Kdo, oligosaccharide synthesis, Ko
Structure type: oligomer ; 453.1210
C
15H
26O
14Na+
Location inside paper: p.69, scheme 4, 40
Trivial name: α-D-glucopyranosyl-(1-5)-sodium (methyl D-glycero-α-D-talo-oct-2-ulopyranosid)onate
Contained glycoepitopes: IEDB_135609,IEDB_142488,IEDB_144998,IEDB_146664,IEDB_983931,SB_192
Methods: 13C NMR, NMR, TLC, ESI-MS, chemical synthesis, chemical methods, glycosylation, RP-HPLC, ESI-TOF-MS
Synthetic data: chemical
Comments, role: synthetical product. NMR data are for Na+ salt.
Related record ID(s): 30121, 30439, 30440, 30441, 30442
NCBI Taxonomy refs (TaxIDs): 29430
Show glycosyltransferases
NMR conditions: in D2O
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6 C7 C8
1,5 aDGlcp 100.98 72.49 73.88 69.86 72.82 60.77
1 aXKop 174.16 103.26 72.76 66.95 77.19 71.75 68.96 63.87
Me 51.64
1H NMR data: present in publication
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 | C7 | C8 |
| 1,5 | aDGlcp | 100.98 | 72.49 | 73.88 | 69.86 | 72.82 | 60.77 | |
| 1 | aXKop | 174.16 | 103.26 | 72.76 | 66.95 | 77.19 | 71.75 | 68.96 | 63.87 |
| | Me | 51.64 | |
|
There is only one chemically distinct structure: