Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Host organism: Cyprinus carpio
Organ / tissue: kidneyAssociated disease: motile aeromonad septicemia (MAS)
The structure was elucidated in this paperNCBI PubMed ID: 33298315Publication DOI: 10.1016/j.carres.2020.108210Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: aturska

hektor.umcs.lublin.pl
Institutions: Department of Fish Diseases, National Veterinary Research Institute, Partyzantów 57, 24-100 Pulawy, Poland, Department of Genetics and Microbiology, Institute of Microbiology and Biotechnology, M. Curie-Sklodowska University, Akademicka 19, 20-033 Lublin, Poland
The O-specific polysaccharide (OPS) was isolated from the lipopolysaccharide of Aeromonas veronii strain Bs8, which is pathogenic to common carp (Cyprinus carpio), after mild acid hydrolysis followed by gel-permeation chromatography. The high-molecular-mass OPS fraction was investigated using chemical methods, mass spectrometry, and 1H and 13C NMR spectroscopy techniques, including 2D homonuclear 1H,1H TOCSY, DQF COSY, NOESY, and heteronuclear 1H-detected 1H,13C HSQC, and HMBC experiments. The analysis revealed that the O-specific polysaccharide contains sugars with the galacto configuration of the ring and is composed of a disaccharide repeating unit with the following structure. (formula: see text).
LPS, O-antigen, O-specific polysaccharide, Aeromonas veronii, Fish pathogen, D-fucopyranose, D-Fucp, GalpNAc
Structure type: polymer chemical repeating unit
Location inside paper: table 1
Compound class: O-polysaccharide
Contained glycoepitopes: IEDB_115015,IEDB_130648,IEDB_137473,IEDB_142489,IEDB_149135,SB_86
Methods: 13C NMR, 1H NMR, methylation, GLC-MS, NMR-2D, SDS-PAGE, chemical analysis, mild acid hydrolysis, GPC
Enzymes that release or process the structure: Aeromonas veronii bv. sobria
NCBI Taxonomy refs (TaxIDs): 654Reference(s) to other database(s): GTC:G91036FH
Show glycosyltransferases
NMR conditions: in D2O at 295 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3 aDFucp 97.2 68.0 80.7 72.7 68.0 16.6
2 Ac 175.4 23.5
bDGalpN 104.2 52.3 77.3 65.6 76.0 62.1
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3 aDFucp 5.04 3.88 3.88 4.06 4.00 1.24
2 Ac - 2.05
bDGalpN 4.70 4.10 3.81 4.16 3.69 3.80
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3 aDFucp 97.2/5.04 68.0/3.88 80.7/3.88 72.7/4.06 68.0/4.00 16.6/1.24
2 Ac 23.5/2.05
bDGalpN 104.2/4.70 52.3/4.10 77.3/3.81 65.6/4.16 76.0/3.69 62.1/3.80
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 3 | aDFucp | 5.04 | 3.88 | 3.88 | 4.06 | 4.00 | 1.24 |
| 2 | Ac |
| 2.05 | |
| | bDGalpN | 4.70 | 4.10 | 3.81 | 4.16 | 3.69 | 3.80 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 3 | aDFucp | 97.2 | 68.0 | 80.7 | 72.7 | 68.0 | 16.6 |
| 2 | Ac | 175.4 | 23.5 | |
| | bDGalpN | 104.2 | 52.3 | 77.3 | 65.6 | 76.0 | 62.1 |
|
There is only one chemically distinct structure: